Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.006G004900 Populus trichocarpa HOM05D005493 ORTHO05D007154 2.3e-158 562.4 329 100.0
Potri.016G005500 Populus trichocarpa HOM05D005493 ORTHO05D007154 1.9e-136 489.6 328 83.8
Thecc.06G236400 Theobroma cacao HOM05D005493 ORTHO05D007154 2.7e-114 416.0 318 73.0
TWI38G1153 Tripterygium wilfordii HOM05D005493 ORTHO05D007154 5.1e-113 411.8 329 72.0
Manes.13G088900 Manihot esculenta HOM05D005493 ORTHO05D007154 2.5e-112 409.5 338 69.5
TAR626G1878 Trochodendron aralioides HOM05D005493 ORTHO05D007154 2.4e-110 402.9 329 67.2
Duzib160G0837 Durio zibethinus HOM05D005493 ORTHO05D007154 3.1e-110 402.5 321 69.8
Duzib192G0504 Durio zibethinus HOM05D005493 ORTHO05D007154 2.0e-109 399.8 328 65.5
TWI63G0139 Tripterygium wilfordii HOM05D005493 ORTHO05D007154 5.8e-109 398.3 321 68.8
Gohir.D05G178600 Gossypium hirsutum HOM05D005493 ORTHO05D007154 2.4e-107 392.9 332 69.3
CiPaw.10G081900 Carya illinoinensis HOM05D005493 ORTHO05D007154 3.2e-107 392.5 320 70.6
Gorai.009G184000 Gossypium raimondii HOM05D005493 ORTHO05D007154 3.5e-106 389.0 332 69.3
Gohir.A05G175500 Gossypium hirsutum HOM05D005493 ORTHO05D007154 6.0e-106 388.3 332 69.3
ClCG01G010900 Citrullus lanatus HOM05D005493 ORTHO05D007154 3.9e-105 385.6 328 67.7
CsaV3_1G015560 Cucumis sativus L. HOM05D005493 ORTHO05D007154 6.6e-105 384.8 326 67.2
Sed0001140 Sechium edule HOM05D005493 ORTHO05D007154 8.7e-105 384.4 325 68.6
Sabra06G0004100 Salix brachista HOM05D005493 ORTHO05D007154 5.6e-104 381.7 359 62.1
MELO3C026067.2 Cucumis melo HOM05D005493 ORTHO05D007154 4.8e-103 378.6 328 68.6
AUR62033011 Chenopodium quinoa HOM05D005493 ORTHO05D007154 6.2e-103 378.3 310 70.3
Cc09_g00320 Coffea canephora HOM05D005493 ORTHO05D007154 1.5e-101 373.6 320 64.4
Atru.chr1.2258 Acer truncatum HOM05D005493 ORTHO05D007154 2.0e-101 373.2 327 68.2
EL10Ac8g19414 Beta vulgaris HOM05D005493 ORTHO05D007154 7.6e-101 371.3 315 68.3
CSS0047473 Camellia sinensis var. sinensis HOM05D005493 ORTHO05D007154 4.9e-100 368.6 319 68.0
Cpa.g.sc27.228 Carica papaya HOM05D005493 ORTHO05D007154 1.4e-99 367.1 305 70.2
DCAR_006316 Daucus carota HOM05D005493 ORTHO05D007154 7.1e-99 364.8 300 66.0
Rhsim13G0140700 Rhododendron simsii HOM05D005493 ORTHO05D007154 2.7e-98 362.8 304 70.7
Hund29945 Selenicereus undatus HOM05D005493 ORTHO05D007154 4.6e-98 362.1 286 68.9
Ah.11g043160 Amaranthus hybridus HOM05D005493 ORTHO05D007154 6.0e-98 361.7 329 66.3
Lalb_Chr18g0057311 Lupinus albus HOM05D005493 ORTHO05D007154 1.0e-97 360.9 320 68.4
Cfa000035 Carpinus fangiana HOM05D005493 ORTHO05D007154 1.3e-97 360.5 218 82.6
Eucgr.E03858 Eucalyptus grandis HOM05D005493 ORTHO05D007154 1.3e-97 360.5 323 67.5
PGSC0003DMG400013365 Solanum tuberosum HOM05D005493 ORTHO05D007154 3.9e-97 359.0 314 67.8
Dinv02850 Davidia involucrata HOM05D005493 ORTHO05D007154 6.7e-97 358.2 263 70.7
Actinidia39254 Actinidia chinensis HOM05D005493 ORTHO05D007154 1.1e-96 357.5 326 61.7
PGR042G0366 Punica granatum HOM05D005493 ORTHO05D007154 1.1e-96 357.5 317 68.1
Haze_07019 Corylus avellana HOM05D005493 ORTHO05D007154 3.3e-96 355.9 218 81.2
PSO339G5884 Papaver somniferum HOM05D005493 ORTHO05D007154 3.3e-96 355.9 308 65.6
Ciclev10015889m.g Citrus clementina HOM05D005493 ORTHO05D007154 5.6e-96 355.1 327 65.7
SalBow8G5358 Salvia bowleyana HOM05D005493 ORTHO05D007154 5.6e-96 355.1 319 61.4
Hma1.2p1_1175F.1_g264030 Hydrangea macrophylla HOM05D005493 ORTHO05D007154 7.4e-96 354.8 300 65.0
Lsat_1_v5_gn_4_63901 Lactuca sativa HOM05D005493 ORTHO05D007154 1.6e-95 353.6 316 64.2
COL.COLO4_31918 Corchorus olitorius HOM05D005493 ORTHO05D007154 2.8e-95 352.8 255 74.5
QL05p067786 Quercus lobata HOM05D005493 ORTHO05D007154 2.8e-95 352.8 340 67.4
THA.LOC104806738 Tarenaya hassleriana HOM05D005493 ORTHO05D007154 6.2e-95 351.7 337 61.7
Phvul.006G138500 Phaseolus vulgaris HOM05D005493 ORTHO05D007154 8.1e-95 351.3 319 62.4
CANSAT56G4202 Cannabis sativa HOM05D005493 ORTHO05D007154 1.1e-94 350.9 313 72.2
CAN.G1156.21 Capsicum annuum HOM05D005493 ORTHO05D007154 1.1e-94 350.9 307 63.8
Lj6g0009296 Lotus japonicus HOM05D005493 ORTHO05D007154 1.4e-94 350.5 319 66.8
CDE05G0023 Ceratophyllum demersum HOM05D005493 ORTHO05D007154 2.4e-94 349.7 296 63.9
Glyma.09G014500 Glycine max HOM05D005493 ORTHO05D007154 3.1e-94 349.4 315 63.5
Glyma.15G120100 Glycine max HOM05D005493 ORTHO05D007154 3.1e-94 349.4 317 64.7
HanXRQChr16g0515751 Helianthus annuus HOM05D005493 ORTHO05D007154 5.3e-94 348.6 303 65.3
Lj1A1246T23 Lonicera japonica HOM05D005493 ORTHO05D007154 5.3e-94 348.6 304 66.4
TPR.G17550 Trifolium pratense HOM05D005493 ORTHO05D007154 4.5e-93 345.5 314 62.7
Aqoxy1G04259 Aquilegia oxysepala HOM05D005493 ORTHO05D007154 5.8e-93 345.1 324 65.7
Aa31sc219G70 Aethionema arabicum HOM05D005493 ORTHO05D007154 9.9e-93 344.4 321 65.1
VMungo0540G1721 Vigna mungo HOM05D005493 ORTHO05D007154 1.7e-92 343.6 295 63.4
Medtr2g027010 Medicago truncatula HOM05D005493 ORTHO05D007154 8.4e-92 341.3 330 60.9
Psat1g172480 Pisum sativum HOM05D005493 ORTHO05D007154 4.2e-91 339.0 318 63.2
SGA_v2.0_scaffold7G03695 Striga asiatica HOM05D005493 ORTHO05D007154 7.1e-91 338.2 307 66.4
Sp2g12390 Schrenkiella parvula HOM05D005493 ORTHO05D007154 7.9e-90 334.7 327 65.7
arahy.Tifrunner.gnm1.ann1.N8508C Arachis hypogaea HOM05D005493 ORTHO05D007154 6.7e-89 331.6 327 59.9
C07p31340 Brassica napus HOM05D005493 ORTHO05D007154 1.5e-88 330.5 330 65.5
MSTRG.16053 Avicennia marina HOM05D005493 ORTHO05D007154 1.9e-88 330.1 307 62.5
CARHR173630 Cardamine hirsuta HOM05D005493 ORTHO05D007154 1.9e-88 330.1 339 65.2
BcaB07g30764 Brassica carinata HOM05D005493 ORTHO05D007154 3.3e-88 329.3 330 65.2
FAN28G0158 Fragaria x ananassa HOM05D005493 ORTHO05D007154 3.3e-88 329.3 277 72.9
Prupe.4G003700 Prunus persica HOM05D005493 ORTHO05D007154 4.3e-88 328.9 307 68.1
MBI14_g10146_MAGBIO Magnolia biondii HOM05D005493 ORTHO05D007154 5.6e-88 328.6 292 70.5
Carub.0008s0010 Capsella rubella HOM05D005493 ORTHO05D007154 1.6e-87 327.0 336 64.9
Nn1g07522 Nelumbo nucifera HOM05D005493 ORTHO05D007154 3.7e-87 325.9 274 65.3
Sopen11g007500 Solanum pennellii HOM05D005493 ORTHO05D007154 3.7e-87 325.9 255 66.3
Solyc11g012760.2 Solanum lycopersicum HOM05D005493 ORTHO05D007154 4.8e-87 325.5 252 67.1
Thhalv10000943m.g Eutrema salsugineum HOM05D005493 ORTHO05D007154 1.1e-86 324.3 318 67.6
arahy.Tifrunner.gnm1.ann1.2D6L40 Arachis hypogaea HOM05D005493 ORTHO05D007154 1.4e-86 323.9 324 61.1
MD10G1339200 Malus domestica HOM05D005493 ORTHO05D007154 1.4e-86 323.9 328 63.1
vmacro03608 Vaccinium macrocarpon HOM05D005493 ORTHO05D007154 1.8e-86 323.6 363 55.9
A06p44860 Brassica napus HOM05D005493 ORTHO05D007154 3.1e-86 322.8 338 63.9
Peaxi162Scf00827g00517 Petunia axillaris HOM05D005493 ORTHO05D007154 3.1e-86 322.8 244 68.0
Nitab4.5_0001296g0130 Nicotiana tabacum HOM05D005493 ORTHO05D007154 4.0e-86 322.4 304 64.5
ECA232G3574 Erigeron canadensis HOM05D005493 ORTHO05D007154 5.3e-86 322.0 299 65.2
MSTRG.7128 Avicennia marina HOM05D005493 ORTHO05D007154 6.9e-86 321.6 319 65.8
BraA06t27358Z Brassica rapa HOM05D005493 ORTHO05D007154 9.0e-86 321.2 338 63.6
BolC9t55855H Brassica oleracea HOM05D005493 ORTHO05D007154 1.5e-85 320.5 316 68.0
A09p23180 Brassica napus HOM05D005493 ORTHO05D007154 2.6e-85 319.7 339 64.9
BraA09t37921Z Brassica rapa HOM05D005493 ORTHO05D007154 2.6e-85 319.7 339 64.9
SGA_v2.0_scaffold186G40127 Striga asiatica HOM05D005493 ORTHO05D007154 2.6e-85 319.7 324 61.4
C09p29920 Brassica napus HOM05D005493 ORTHO05D007154 4.9e-84 315.5 343 64.1
BcaC04g21607 Brassica carinata HOM05D005493 ORTHO05D007154 1.1e-83 314.3 343 63.8
Oeu025962.1 Olea europaea HOM05D005493 ORTHO05D007154 1.1e-83 314.3 316 63.9
Sabra16G0010400 Salix brachista HOM05D005493 ORTHO05D007154 2.5e-83 313.2 372 57.0
CDE05G0194 Ceratophyllum demersum HOM05D005493 ORTHO05D007154 5.5e-83 312.0 299 61.2
Zm00001eb253250 Zea mays HOM05D005493 ORTHO05D007154 7.1e-83 311.6 297 55.6
FAN23G1811 Fragaria x ananassa HOM05D005493 ORTHO05D007154 1.2e-82 310.8 304 68.1
FvH4_1g24140 Fragaria vesca HOM05D005493 ORTHO05D007154 2.1e-82 310.1 304 66.8
FAN19G1729 Fragaria x ananassa HOM05D005493 ORTHO05D007154 2.1e-82 310.1 304 66.8
RcHm_v2.0_Chr2g0120371 Rosa chinensis HOM05D005493 ORTHO05D007154 2.1e-82 310.1 327 65.4
Dinv15338 Davidia involucrata HOM05D005493 ORTHO05D007154 2.7e-82 309.7 267 67.8
Sc17g0007990 Simmondsia chinensis HOM05D005493 ORTHO05D007154 2.3e-81 306.6 266 66.5
ATR0751G138 Amborella trichopoda HOM05D005493 ORTHO05D007154 6.7e-81 305.1 345 58.0
Rhsim13G0140600 Rhododendron simsii HOM05D005493 ORTHO05D007154 1.9e-80 303.5 309 59.9
Migut.M01444 Erythranthe guttata HOM05D005493 ORTHO05D007154 6.3e-79 298.5 299 63.5
AL8G10270 Arabidopsis lyrata HOM05D005493 ORTHO05D007154 3.1e-78 296.2 323 62.5
BcaC06g31350 Brassica carinata HOM05D005493 ORTHO05D007154 4.1e-78 295.8 330 62.7
AT5G47680 Arabidopsis thaliana HOM05D005493 ORTHO05D007154 1.7e-76 290.4 333 61.6
BcaC06g34232 Brassica carinata HOM05D005493 ORTHO05D007154 6.5e-76 288.5 327 58.7
AUR62034063 Chenopodium quinoa HOM05D005493 ORTHO05D007154 1.1e-72 277.7 183 76.0
BolC7t43675H Brassica oleracea HOM05D005493 ORTHO05D007154 3.7e-71 272.7 306 62.7
Ca_00763_v3 Cicer arietinum L. HOM05D005493 ORTHO05D007154 2.0e-69 266.9 244 63.1
HPP92_027483 Vanilla planifolia HOM05D005493 ORTHO05D007154 1.9e-67 260.4 234 58.1
SEGI_02626 Sequoiadendron giganteum HOM05D005493 ORTHO05D007154 8.2e-63 245.0 270 53.3
GSVIVG01002894001 Vitis vinifera HOM05D005493 ORTHO05D007154 1.2e-61 241.1 138 87.0
Mapoly0011s0174 Marchantia polymorpha HOM05D005493 ORTHO05D007154 2.5e-59 233.4 286 55.6
Pp3c1_33120 Physcomitrium patens HOM05D005493 ORTHO05D007154 6.1e-58 228.8 319 45.5
CBR_g3993 Chara braunii HOM05D005493 ORTHO05D007154 2.5e-51 206.8 195 51.3
SMO358G0363 Selaginella moellendorffii HOM05D005493 ORTHO05D007154 3.6e-50 203.0 267 50.2
Pp3c2_12110 Physcomitrium patens HOM05D005493 ORTHO05D007154 2.6e-48 196.8 325 41.2
Os02g0725600 Oryza sativa ssp. japonica HOM05D005493 ORTHO05D007154 2.0e-45 187.2 141 70.2
SHI12358 Sapria himalayana HOM05D005493 ORTHO05D007154 2.2e-44 183.7 124 70.2
Actinidia11906 Actinidia chinensis HOM05D005493 ORTHO05D007154 2.0e-37 160.6 175 52.6
Zm00001eb070580 Zea mays HOM05D005493 ORTHO05D007154 5.9e-37 159.1 95 80.0
Zm00001eb264500 Zea mays HOM05D005493 ORTHO05D007154 5.9e-37 159.1 97 78.4
MCO13G503 Micromonas commoda HOM05D005493 ORTHO05D007154 4.7e-34 149.4 177 42.4
AagrBONN_evm.TU.Sc2ySwM_362.2751 Anthoceros agrestis HOM05D005493 ORTHO05D007154 2.6e-32 143.7 262 35.9
Cre06.g278500 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 7.5e-32 142.1 297 33.3
Zm00001eb168490 Zea mays HOM05D000087 ORTHO05D011931 3.4e-24 116.7 70 78.6
unitig_37.g12178 Utricularia gibba HOM05D005493 ORTHO05D007154 1.7e-23 114.4 174 55.7
PRCOL_00000725 Prasinoderma coloniale HOM05D005493 ORTHO05D007154 1.1e-22 111.7 199 33.7
CBR_g1099 Chara braunii HOM05D000019 ORTHO05D000002 2.7e-21 107.1 299 25.1
Cfa025804 Carpinus fangiana HOM05D005493 ORTHO05D007154 3.1e-17 93.6 142 41.5
SHI50428 Sapria himalayana HOM05D005493 ORTHO05D007154 9.8e-16 88.6 169 37.3
Cre10.g456851 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 3.9e-12 76.6 192 29.7
Cre02.g119350 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 5.1e-12 76.3 182 29.7
vmacro23227 Vaccinium macrocarpon HOM05D005493 ORTHO05D007154 8.1e-10 68.9 62 59.7
unitig_37.g12179 Utricularia gibba HOM05D005493 ORTHO05D007154 4.4e-08 63.2 69 55.1
MCO11G471 Micromonas commoda HOM05D050729 ORTHO05D049153 8.3e-07 58.9 98 29.6


User provided reference genes

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