Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.005G221700 Populus trichocarpa HOM05D004553 ORTHO05D005426 1.6e-172 609.4 320 100.0
Potri.002G041400 Populus trichocarpa HOM05D004553 ORTHO05D005426 4.4e-154 548.1 320 90.6
Sabra02G0033000 Salix brachista HOM05D004553 ORTHO05D005426 4.4e-138 495.0 320 83.4
Gohir.A07G211100 Gossypium hirsutum HOM05D004553 ORTHO05D005426 1.4e-131 473.4 305 82.6
Ciclev10021217m.g Citrus clementina HOM05D004553 ORTHO05D005426 1.8e-131 473.0 316 79.4
Gohir.D07G217100 Gossypium hirsutum HOM05D004553 ORTHO05D005426 1.8e-131 473.0 305 82.6
Gorai.001G251500 Gossypium raimondii HOM05D004553 ORTHO05D005426 3.4e-130 468.8 305 82.3
Manes.05G087500 Manihot esculenta HOM05D004553 ORTHO05D005426 3.5e-127 458.8 320 77.2
Actinidia21228 Actinidia chinensis HOM05D004553 ORTHO05D005426 2.3e-126 456.1 299 80.9
Actinidia23392 Actinidia chinensis HOM05D004553 ORTHO05D005426 3.9e-126 455.3 300 80.3
COL.COLO4_05596 Corchorus olitorius HOM05D004553 ORTHO05D005426 1.1e-125 453.8 312 78.8
Prupe.8G227700 Prunus persica HOM05D004553 ORTHO05D005426 4.3e-125 451.8 321 76.6
Hma1.2p1_0273F.1_g109950 Hydrangea macrophylla HOM05D004553 ORTHO05D005426 7.3e-125 451.1 305 80.0
PGR044G0761 Punica granatum HOM05D004553 ORTHO05D005426 1.3e-124 450.3 318 75.5
MD05G1201100 Malus domestica HOM05D004553 ORTHO05D005426 1.6e-124 449.9 324 76.9
Cfa002394 Carpinus fangiana HOM05D004553 ORTHO05D005426 4.8e-124 448.4 301 79.1
Nn3g19599 Nelumbo nucifera HOM05D004553 ORTHO05D005426 4.8e-124 448.4 302 77.8
Dinv34597 Davidia involucrata HOM05D004553 ORTHO05D005426 3.1e-123 445.7 300 79.3
Haze_24589 Corylus avellana HOM05D004553 ORTHO05D005426 4.0e-123 445.3 301 79.1
Haze_24593 Corylus avellana HOM05D004553 ORTHO05D005426 4.0e-123 445.3 301 79.1
MD10G1187900 Malus domestica HOM05D004553 ORTHO05D005426 1.2e-122 443.7 324 75.0
Duzib138G1605 Durio zibethinus HOM05D004553 ORTHO05D005426 3.4e-122 442.2 301 79.1
HanXRQChr10g0281111 Helianthus annuus HOM05D004553 ORTHO05D005426 5.8e-122 441.4 302 77.2
MELO3C012740.2 Cucumis melo HOM05D004553 ORTHO05D005426 2.2e-121 439.5 305 76.7
CsaV3_7G026990 Cucumis sativus L. HOM05D004553 ORTHO05D005426 1.9e-120 436.4 305 76.7
AUR62024744 Chenopodium quinoa HOM05D004553 ORTHO05D005426 3.2e-120 435.6 316 75.6
MBI17_g17502_MAGBIO Magnolia biondii HOM05D004553 ORTHO05D005426 3.2e-120 435.6 305 76.7
GSVIVG01028297001 Vitis vinifera HOM05D004553 ORTHO05D005426 5.4e-120 434.9 302 77.5
Migut.D00406 Erythranthe guttata HOM05D004553 ORTHO05D005426 1.6e-119 433.3 302 77.2
ClCG09G008080 Citrullus lanatus HOM05D004553 ORTHO05D005426 2.7e-119 432.6 305 75.4
Ah.02g111810 Amaranthus hybridus HOM05D004553 ORTHO05D005426 4.6e-119 431.8 317 74.8
AUR62011903 Chenopodium quinoa HOM05D004553 ORTHO05D005426 6.0e-119 431.4 316 74.4
Medtr7g096510 Medicago truncatula HOM05D004553 ORTHO05D005426 2.3e-118 429.5 303 76.2
TPR.G5760 Trifolium pratense HOM05D004553 ORTHO05D005426 6.7e-118 427.9 303 76.2
Nitab4.5_0000500g0290 Nicotiana tabacum HOM05D004553 ORTHO05D005426 1.1e-117 427.2 299 76.3
Sed0016387 Sechium edule HOM05D004553 ORTHO05D005426 1.9e-117 426.4 305 73.1
Nitab4.5_0009451g0050 Nicotiana tabacum HOM05D004553 ORTHO05D005426 2.5e-117 426.0 300 76.0
Atru.chr5.1915 Acer truncatum HOM05D004553 ORTHO05D005426 5.6e-117 424.9 321 72.3
TAR365G0062 Trochodendron aralioides HOM05D004553 ORTHO05D005426 9.6e-117 424.1 298 76.5
CAN.G572.12 Capsicum annuum HOM05D004553 ORTHO05D005426 2.1e-116 422.9 300 76.0
Nitab4.5_0001839g0070 Nicotiana tabacum HOM05D004553 ORTHO05D005426 6.2e-116 421.4 300 75.0
Solyc08g077830.1 Solanum lycopersicum HOM05D004553 ORTHO05D005426 8.1e-116 421.0 303 74.6
TPR.G18834 Trifolium pratense HOM05D004553 ORTHO05D005426 1.1e-115 420.6 305 74.8
PGSC0003DMG400026216 Solanum tuberosum HOM05D004553 ORTHO05D005426 1.4e-115 420.2 303 74.6
Sed0015397 Sechium edule HOM05D004553 ORTHO05D005426 1.8e-115 419.9 305 72.8
Rhsim01G0266400 Rhododendron simsii HOM05D004553 ORTHO05D005426 2.4e-115 419.5 292 78.4
Sopen08g026340 Solanum pennellii HOM05D004553 ORTHO05D005426 9.0e-115 417.5 303 74.3
Aa31LG10G12900 Aethionema arabicum HOM05D004553 ORTHO05D005426 1.5e-114 416.8 312 72.8
AT3G58180 Arabidopsis thaliana HOM05D004553 ORTHO05D005426 7.6e-114 414.5 305 73.1
Os12g0626100 Oryza sativa ssp. japonica HOM05D004553 ORTHO05D005426 4.9e-113 411.8 303 72.9
PSO675G7515 Papaver somniferum HOM05D004553 ORTHO05D005426 4.9e-113 411.8 309 71.8
Aqoxy5G00280 Aquilegia oxysepala HOM05D004553 ORTHO05D005426 6.4e-113 411.4 308 71.4
Cpa.g.sc50.47 Carica papaya HOM05D004553 ORTHO05D005426 8.4e-113 411.0 306 71.9
THA.LOC104802841 Tarenaya hassleriana HOM05D004553 ORTHO05D005426 8.4e-113 411.0 311 72.3
Lsat_1_v5_gn_9_9101 Lactuca sativa HOM05D004553 ORTHO05D005426 1.1e-112 410.6 302 73.2
MSTRG.3646 Avicennia marina HOM05D004553 ORTHO05D005426 2.4e-112 409.5 302 72.8
SGA_v2.0_scaffold31G12652 Striga asiatica HOM05D004553 ORTHO05D005426 9.3e-112 407.5 309 73.8
Cc03_g10870 Coffea canephora HOM05D004553 ORTHO05D005426 1.2e-111 407.1 300 74.3
Peaxi162Scf00324g00032 Petunia axillaris HOM05D004553 ORTHO05D005426 2.1e-111 406.4 300 73.0
Sp5g04540 Schrenkiella parvula HOM05D004553 ORTHO05D005426 2.7e-111 406.0 303 71.9
Carub.0005s2503 Capsella rubella HOM05D004553 ORTHO05D005426 4.6e-111 405.2 315 69.2
BcaC07g40188 Brassica carinata HOM05D004553 ORTHO05D005426 6.0e-111 404.8 303 71.6
Hund09587 Selenicereus undatus HOM05D004553 ORTHO05D005426 1.3e-110 403.7 317 71.0
CiPaw.03G261300 Carya illinoinensis HOM05D004553 ORTHO05D005426 1.8e-110 403.3 303 72.3
TWI12G0019 Tripterygium wilfordii HOM05D004553 ORTHO05D005426 3.0e-110 402.5 308 72.1
QL09p037745 Quercus lobata HOM05D004553 ORTHO05D005426 5.1e-110 401.7 301 72.8
vmacro03822 Vaccinium macrocarpon HOM05D004553 ORTHO05D005426 5.1e-110 401.7 314 71.7
BcaB02g07544 Brassica carinata HOM05D004553 ORTHO05D005426 8.7e-110 401.0 303 70.3
A09p50940 Brassica napus HOM05D004553 ORTHO05D005426 1.1e-109 400.6 303 70.3
BraA09t40540Z Brassica rapa HOM05D004553 ORTHO05D005426 1.1e-109 400.6 303 70.3
EL10Ac5g10427 Beta vulgaris HOM05D004553 ORTHO05D005426 4.3e-109 398.7 317 70.0
Thhalv10006107m.g Eutrema salsugineum HOM05D004553 ORTHO05D005426 4.3e-109 398.7 315 70.8
AL5G39880 Arabidopsis lyrata HOM05D004553 ORTHO05D005426 7.4e-109 397.9 305 71.5
Eucgr.K03287 Eucalyptus grandis HOM05D004553 ORTHO05D005426 7.4e-109 397.9 304 69.7
Oeu025823.1 Olea europaea HOM05D004553 ORTHO05D005426 9.6e-109 397.5 302 71.2
RcHm_v2.0_Chr6g0288871 Rosa chinensis HOM05D004553 ORTHO05D005426 1.6e-108 396.7 309 70.6
Glyma.03G161100 Glycine max HOM05D004553 ORTHO05D005426 2.8e-108 396.0 300 72.0
Lj1A269G34 Lonicera japonica HOM05D004553 ORTHO05D005426 2.8e-108 396.0 297 72.4
Psat3g059120 Pisum sativum HOM05D004553 ORTHO05D005426 2.8e-108 396.0 300 71.7
BcaC07g40268 Brassica carinata HOM05D004553 ORTHO05D005426 1.1e-107 394.0 303 70.0
BcaC08g44904 Brassica carinata HOM05D004553 ORTHO05D005426 1.1e-107 394.0 303 70.3
FAN20G1146 Fragaria x ananassa HOM05D004553 ORTHO05D005426 1.8e-107 393.3 309 69.6
BolC8t50975H Brassica oleracea HOM05D004553 ORTHO05D005426 2.4e-107 392.9 304 70.4
ATR0794G102 Amborella trichopoda HOM05D004553 ORTHO05D005426 3.1e-107 392.5 298 71.1
FvH4_2g22010 Fragaria vesca HOM05D004553 ORTHO05D005426 3.1e-107 392.5 309 69.9
Phvul.001G159000 Phaseolus vulgaris HOM05D004553 ORTHO05D005426 4.0e-107 392.1 302 70.2
CANSAT21G2336 Cannabis sativa HOM05D004553 ORTHO05D005426 2.0e-106 389.8 308 68.8
Ca_02526_v3 Cicer arietinum L. HOM05D004553 ORTHO05D005426 4.5e-106 388.7 303 69.6
FAN15G2654 Fragaria x ananassa HOM05D004553 ORTHO05D005426 4.5e-106 388.7 316 68.4
FAN27G3448 Fragaria x ananassa HOM05D004553 ORTHO05D005426 1.7e-105 386.7 298 70.8
FAN24G1077 Fragaria x ananassa HOM05D004553 ORTHO05D005426 3.8e-105 385.6 316 68.4
TWI18G0975 Tripterygium wilfordii HOM05D004553 ORTHO05D005426 3.8e-105 385.6 303 71.3
VMungo1383G1775 Vigna mungo HOM05D004553 ORTHO05D005426 6.5e-105 384.8 295 70.8
Lalb_Chr20g0107851 Lupinus albus HOM05D004553 ORTHO05D005426 1.1e-104 384.0 301 69.1
TAR636G3311 Trochodendron aralioides HOM05D004553 ORTHO05D005426 1.1e-104 384.0 300 70.7
BolC6t37683H Brassica oleracea HOM05D004553 ORTHO05D005426 1.9e-104 383.3 295 70.8
arahy.Tifrunner.gnm1.ann1.9FA7V6 Arachis hypogaea HOM05D004553 ORTHO05D005426 7.1e-104 381.3 304 68.1
C08p33760 Brassica napus HOM05D004553 ORTHO05D005426 9.3e-104 380.9 304 69.4
PSO541G5588 Papaver somniferum HOM05D004553 ORTHO05D005426 9.3e-104 380.9 309 67.3
DCAR_012530 Daucus carota HOM05D004553 ORTHO05D005426 1.2e-103 380.6 302 68.9
Psat0s2295g0120 Pisum sativum HOM05D004553 ORTHO05D005426 6.0e-103 378.3 299 69.6
BraA07t30048Z Brassica rapa HOM05D004553 ORTHO05D005426 8.7e-102 374.4 307 67.8
Thecc.01G262600 Theobroma cacao HOM05D004553 ORTHO05D005426 8.7e-102 374.4 242 81.8
DCAR_009311 Daucus carota HOM05D004553 ORTHO05D005426 1.1e-101 374.0 295 68.8
Os12g0163300 Oryza sativa ssp. japonica HOM05D004553 ORTHO05D005426 1.5e-101 373.6 304 68.4
A07p23970 Brassica napus HOM05D004553 ORTHO05D005426 3.3e-101 372.5 296 69.9
C06p25240 Brassica napus HOM05D004553 ORTHO05D005426 3.3e-101 372.5 295 70.2
SalBow6G2244 Salvia bowleyana HOM05D004553 ORTHO05D005426 3.3e-101 372.5 308 69.5
unitig_8.g3887 Utricularia gibba HOM05D004553 ORTHO05D005426 7.4e-101 371.3 318 65.1
PSO832G2284 Papaver somniferum HOM05D004553 ORTHO05D005426 2.1e-100 369.8 309 65.7
Zm00001eb259150 Zea mays HOM05D004553 ORTHO05D005426 4.1e-99 365.5 317 64.0
arahy.Tifrunner.gnm1.ann1.6P10V3 Arachis hypogaea HOM05D004553 ORTHO05D005426 1.7e-97 360.1 304 64.8
arahy.Tifrunner.gnm1.ann1.1I5KFR Arachis hypogaea HOM05D004553 ORTHO05D005426 2.2e-97 359.8 304 64.8
arahy.Tifrunner.gnm1.ann1.59X69N Arachis hypogaea HOM05D004553 ORTHO05D005426 4.2e-96 355.5 304 64.5
ECA247G2484 Erigeron canadensis HOM05D004553 ORTHO05D005426 3.7e-92 342.4 244 75.4
HPP92_007745 Vanilla planifolia HOM05D004553 ORTHO05D005426 6.5e-89 331.6 298 62.4
vmacro06125 Vaccinium macrocarpon HOM05D004553 ORTHO05D005426 1.3e-84 317.4 305 61.3
vmacro02641 Vaccinium macrocarpon HOM05D004553 ORTHO05D005426 9.1e-83 311.2 297 60.6
Sc05g0000780 Simmondsia chinensis HOM05D004553 ORTHO05D005426 5.7e-77 292.0 234 69.7
CARHR168560 Cardamine hirsuta HOM05D004553 ORTHO05D005426 1.8e-67 260.4 216 66.7
AagrBONN_evm.TU.Sc2ySwM_228.3863 Anthoceros agrestis HOM05D004553 ORTHO05D005426 2.7e-66 256.5 300 52.7
AagrBONN_evm.TU.Sc2ySwM_117.1472 Anthoceros agrestis HOM05D004553 ORTHO05D005426 1.0e-65 254.6 300 52.0
Pp3c11_17490 Physcomitrium patens HOM05D004553 ORTHO05D005426 1.2e-63 247.7 298 51.3
Mapoly0065s0014 Marchantia polymorpha HOM05D004553 ORTHO05D005426 1.6e-63 247.3 244 57.0
Glyma.19G162800 Glycine max HOM05D001448 ORTHO05D005781 3.5e-58 229.6 256 56.6
Cre10.g435550 Chlamydomonas reinhardtii HOM05D004553 ORTHO05D005426 7.7e-58 228.4 287 46.3
Psat2g052960 Pisum sativum HOM05D004553 ORTHO05D005426 1.1e-56 224.6 196 63.8
SMO304G0012 Selaginella moellendorffii HOM05D004553 ORTHO05D005426 1.8e-54 217.2 297 47.1
MCO15G119 Micromonas commoda HOM05D004553 ORTHO05D005426 4.9e-52 209.1 322 45.7
CBR_g46193 Chara braunii HOM05D004553 ORTHO05D005426 4.5e-50 202.6 316 41.8
CDE04G1470 Ceratophyllum demersum HOM05D004553 ORTHO05D005426 4.7e-47 192.6 126 75.4
Psat0s2087g0120 Pisum sativum HOM05D004553 ORTHO05D005426 1.0e-46 191.4 126 77.0
HPP92_007825 Vanilla planifolia HOM05D004553 ORTHO05D005426 3.4e-45 186.4 252 48.4
Haze_27369 Corylus avellana HOM05D004553 ORTHO05D005426 5.7e-45 185.7 283 41.0
PRCOL_00005471 Prasinoderma coloniale HOM05D004553 ORTHO05D005426 2.1e-39 167.2 299 39.1
SEGI_33857 Sequoiadendron giganteum HOM05D004553 ORTHO05D005426 2.4e-35 153.7 130 66.2
Psat0s2088g0080 Pisum sativum HOM05D004553 ORTHO05D005426 8.6e-33 145.2 94 78.7
Nn1g02691 Nelumbo nucifera HOM05D004553 ORTHO05D005426 4.7e-31 139.4 302 35.4
AT3G62530 Arabidopsis thaliana HOM05D004553 ORTHO05D005426 1.4e-30 137.9 207 42.0
SEGI_01794 Sequoiadendron giganteum HOM05D004553 ORTHO05D005426 3.7e-28 129.8 90 74.4
Oeu044898.1 Olea europaea HOM05D004553 ORTHO05D005426 4.1e-27 126.3 221 39.8
Oeu058648.1 Olea europaea HOM05D004553 ORTHO05D005426 1.0e-25 121.7 127 53.5
SHI26037 Sapria himalayana HOM05D004553 ORTHO05D000023 2.8e-23 113.6 169 43.8
BcaC01g01031 Brassica carinata HOM05D004553 ORTHO05D005426 4.7e-23 112.8 184 46.2
C03p87400 Brassica napus HOM05D004553 ORTHO05D005426 4.7e-23 112.8 184 46.2
BolC3t21049H Brassica oleracea HOM05D004553 ORTHO05D005426 4.7e-23 112.8 184 46.2
CDE04G0333 Ceratophyllum demersum HOM05D004553 ORTHO05D005426 6.8e-22 109.0 73 78.1
CARHR168550 Cardamine hirsuta HOM05D004553 ORTHO05D005426 7.6e-21 105.5 74 74.3
AagrBONN_evm.TU.Sc2ySwM_228.2479 Anthoceros agrestis HOM05D004553 ORTHO05D005426 2.4e-19 100.5 177 41.8
FvH4_2g19410 Fragaria vesca HOM05D004553 ORTHO05D005426 2.4e-19 100.5 63 85.7
Oeu041828.1 Olea europaea HOM05D004553 ORTHO05D005426 1.6e-15 87.8 80 57.5
Oeu016862.1 Olea europaea HOM05D004553 ORTHO05D005426 2.8e-15 87.0 82 62.2
CAN.G159.14 Capsicum annuum HOM05D004553 ORTHO05D005426 1.2e-13 81.6 89 56.2
CAN.G795.4 Capsicum annuum HOM05D004553 ORTHO05D005426 2.2e-12 77.4 89 51.7
Nitab4.5_0002915g0080 Nicotiana tabacum HOM05D000693 ORTHO05D001102 2.5e-08 63.9 107 39.3
AagrBONN_evm.TU.Sc2ySwM_117.2005 Anthoceros agrestis HOM05D004553 ORTHO05D005426 7.3e-08 62.4 59 61.0
Nitab4.5_0002915g0090 Nicotiana tabacum HOM05D004553 ORTHO05D005426 4.0e-06 56.6 94 40.4
CAN.G907.20 Capsicum annuum HOM05D004553 ORTHO05D005426 6.9e-06 55.8 40 62.5


User provided reference genes

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