Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.005G103300 Populus trichocarpa HOM05D007700 ORTHO05D009669 1.2e-139 500.7 260 100.0
Sabra05G0085500 Salix brachista HOM05D007700 ORTHO05D009669 3.9e-127 459.1 260 90.4
Thecc.01G008500 Theobroma cacao HOM05D007700 ORTHO05D009669 1.4e-76 291.2 262 61.5
QL06p052538 Quercus lobata HOM05D007700 ORTHO05D009669 1.9e-73 280.8 269 56.9
Manes.01G153300 Manihot esculenta HOM05D007700 ORTHO05D009669 4.7e-72 276.2 267 58.1
CANSAT25G3310 Cannabis sativa HOM05D007700 ORTHO05D009669 3.4e-70 270.0 265 54.3
Gorai.003G004000 Gossypium raimondii HOM05D007700 ORTHO05D009669 3.4e-70 270.0 261 57.9
Gohir.D03G003800 Gossypium hirsutum HOM05D007700 ORTHO05D009669 1.7e-69 267.7 259 57.5
Actinidia22918 Actinidia chinensis HOM05D007700 ORTHO05D009669 6.3e-69 265.8 267 55.1
Atru.chr3.942 Acer truncatum HOM05D007700 ORTHO05D009669 8.3e-69 265.4 269 53.5
Eucgr.I02272 Eucalyptus grandis HOM05D007700 ORTHO05D009669 3.1e-68 263.5 281 52.0
Aa31LG8G14930 Aethionema arabicum HOM05D007700 ORTHO05D009669 3.5e-67 260.0 262 51.9
arahy.Tifrunner.gnm1.ann1.PXC5PH Arachis hypogaea HOM05D007700 ORTHO05D009669 5.9e-67 259.2 272 55.5
Lj3g0022870 Lotus japonicus HOM05D007700 ORTHO05D009669 2.2e-66 257.3 267 53.2
Cfa007052 Carpinus fangiana HOM05D007700 ORTHO05D009669 1.9e-65 254.2 273 53.8
Haze_03682 Corylus avellana HOM05D006745 ORTHO05D008449 7.2e-65 252.3 269 54.6
Thhalv10022683m.g Eutrema salsugineum HOM05D007700 ORTHO05D009669 7.2e-65 252.3 262 51.9
CiPaw.07G004600 Carya illinoinensis HOM05D007700 ORTHO05D009669 1.2e-64 251.5 266 55.3
ClCG01G020760 Citrullus lanatus HOM05D007700 ORTHO05D009669 2.8e-64 250.4 264 55.7
MELO3C007960.2 Cucumis melo HOM05D007700 ORTHO05D009669 3.6e-64 250.0 264 53.4
arahy.Tifrunner.gnm1.ann1.HE2L98 Arachis hypogaea HOM05D007700 ORTHO05D009669 4.7e-64 249.6 272 54.0
Sp3g31020 Schrenkiella parvula HOM05D007700 ORTHO05D009669 8.0e-64 248.8 259 51.7
Ca_23118_v3 Cicer arietinum L. HOM05D007700 ORTHO05D009669 1.0e-63 248.4 263 51.0
Sopen02g027760 Solanum pennellii HOM05D007700 ORTHO05D009669 3.0e-63 246.9 268 51.9
AL3G50640 Arabidopsis lyrata HOM05D007700 ORTHO05D009669 6.8e-63 245.7 261 49.0
Lj2P490T20 Lonicera japonica HOM05D007700 ORTHO05D009669 1.2e-62 245.0 263 52.5
PGSC0003DMG400040241 Solanum tuberosum HOM05D007700 ORTHO05D009669 1.2e-62 245.0 265 51.3
AT2G17670 Arabidopsis thaliana HOM05D007700 ORTHO05D009669 7.5e-62 242.3 262 49.6
TPR.G28737 Trifolium pratense HOM05D007700 ORTHO05D009669 9.8e-62 241.9 264 51.5
Dinv40165 Davidia involucrata HOM05D007700 ORTHO05D009669 1.7e-61 241.1 275 51.6
Medtr8g005870 Medicago truncatula HOM05D007700 ORTHO05D009669 2.8e-61 240.4 271 50.2
C09p13500 Brassica napus HOM05D007700 ORTHO05D009669 3.7e-61 240.0 256 52.0
BolC9t54240H Brassica oleracea HOM05D007700 ORTHO05D009669 6.3e-61 239.2 256 52.0
Nn6g31772 Nelumbo nucifera HOM05D007700 ORTHO05D009669 8.3e-61 238.8 277 48.0
BraA09t36788Z Brassica rapa HOM05D007700 ORTHO05D009669 1.1e-60 238.4 257 51.0
VMungo0331G0753 Vigna mungo HOM05D007700 ORTHO05D009669 1.4e-60 238.0 267 52.1
Glyma.07G109000 Glycine max HOM05D007700 ORTHO05D009669 2.4e-60 237.3 262 52.3
A09p11480 Brassica napus HOM05D007700 ORTHO05D009669 4.5e-59 233.0 256 51.2
Cc00_g14260 Coffea canephora HOM05D007700 ORTHO05D009669 4.5e-59 233.0 265 52.5
BcaB07g31715 Brassica carinata HOM05D007700 ORTHO05D009669 7.8e-59 232.3 266 49.2
Psat4g208920 Pisum sativum HOM05D007700 ORTHO05D009669 1.0e-58 231.9 265 49.8
vmacro20514 Vaccinium macrocarpon HOM05D007700 ORTHO05D009669 1.7e-58 231.1 271 49.1
PGR119G0746 Punica granatum HOM05D007700 ORTHO05D009669 2.9e-58 230.3 265 50.6
CsaV3_6G047710 Cucumis sativus L. HOM05D007700 ORTHO05D009669 8.6e-58 228.8 264 51.5
Rhsim10G0201800 Rhododendron simsii HOM05D000242 ORTHO05D009669 2.5e-57 227.3 203 57.1
THA.LOC104804288 Tarenaya hassleriana HOM05D007700 ORTHO05D009669 2.5e-57 227.3 264 47.7
Rhsim10G0203000 Rhododendron simsii HOM05D000242 ORTHO05D009669 5.6e-57 226.1 203 57.1
Ciclev10025555m.g Citrus clementina HOM05D007700 ORTHO05D009669 3.6e-56 223.4 264 48.5
Solyc02g082970.1 Solanum lycopersicum HOM05D007700 ORTHO05D009669 4.0e-55 219.9 267 48.3
TAR625G0909 Trochodendron aralioides HOM05D007700 ORTHO05D009669 6.8e-55 219.2 274 48.5
Sed0015131 Sechium edule HOM05D000242 ORTHO05D009669 1.1e-52 211.8 265 46.4
HanXRQChr07g0192051 Helianthus annuus HOM05D007700 ORTHO05D009669 4.6e-51 206.5 269 48.0
Prupe.7G178400 Prunus persica HOM05D007700 ORTHO05D009669 7.8e-51 205.7 264 45.8
Carub.0003s3177 Capsella rubella HOM05D007700 ORTHO05D009669 8.6e-50 202.2 229 46.3
Dinv08534 Davidia involucrata HOM05D007700 ORTHO05D009669 1.8e-47 194.5 151 63.6
DCAR_023138 Daucus carota HOM05D007700 ORTHO05D009669 2.3e-47 194.1 182 56.0
Phvul.010G056500 Phaseolus vulgaris HOM05D007700 ORTHO05D009669 2.3e-47 194.1 270 46.7
Gohir.A02G176100 Gossypium hirsutum HOM05D007700 ORTHO05D009669 2.6e-46 190.7 148 64.9
CARHR107900 Cardamine hirsuta HOM05D007700 ORTHO05D009669 5.8e-46 189.5 221 48.4
COL.COLO4_22522 Corchorus olitorius HOM05D007700 ORTHO05D009669 1.7e-45 188.0 241 49.0
MBI05_g43154_MAGBIO Magnolia biondii HOM05D007700 ORTHO05D009669 3.7e-45 186.8 265 42.6
MD02G1120600 Malus domestica HOM05D007700 ORTHO05D009669 2.4e-44 184.1 265 43.0
Lsat_1_v5_gn_2_74520 Lactuca sativa HOM05D007700 ORTHO05D009669 1.7e-42 177.9 280 42.5
CDE05G1147 Ceratophyllum demersum HOM05D007700 ORTHO05D009669 7.3e-41 172.6 243 39.5
Migut.C00922 Erythranthe guttata HOM05D007700 ORTHO05D009669 2.3e-39 167.5 245 45.7
TWI73G0108 Tripterygium wilfordii HOM05D007700 ORTHO05D009669 1.5e-38 164.9 200 46.5
HPP92_025432 Vanilla planifolia HOM05D007700 ORTHO05D009669 2.6e-38 164.1 280 38.6
SGA_v2.0_scaffold275G46573 Striga asiatica HOM05D007700 ORTHO05D009669 7.5e-38 162.5 239 46.4
SalBow7G3569 Salvia bowleyana HOM05D007700 ORTHO05D009669 1.7e-37 161.4 234 44.9
Peaxi162Scf01310g10029 Petunia axillaris HOM05D007700 ORTHO05D009669 2.2e-37 161.0 264 41.3
Lalb_Chr03g0039951 Lupinus albus HOM05D007700 ORTHO05D009669 1.4e-36 158.3 197 50.3
FvH4_1g10671 Fragaria vesca HOM05D007700 ORTHO05D009669 4.1e-36 156.8 189 48.1
Nitab4.5_0001581g0090 Nicotiana tabacum HOM05D007700 ORTHO05D009669 1.0e-34 152.1 150 53.3
Nitab4.5_0003207g0040 Nicotiana tabacum HOM05D007700 ORTHO05D009669 1.0e-34 152.1 150 53.3
FAN23G0395 Fragaria x ananassa HOM05D007700 ORTHO05D009669 5.1e-34 149.8 187 44.9
AUR62041102 Chenopodium quinoa HOM05D007700 ORTHO05D009669 6.6e-34 149.4 194 45.4
CAN.G890.59 Capsicum annuum HOM05D007700 ORTHO05D009669 5.6e-33 146.4 150 52.0
EL10Ac6g13369 Beta vulgaris HOM05D007700 ORTHO05D009669 1.2e-32 145.2 209 45.0
AUR62026170 Chenopodium quinoa HOM05D007700 ORTHO05D009669 2.0e-30 137.9 194 43.3
Aqoxy6G01792 Aquilegia oxysepala HOM05D007700 ORTHO05D009669 2.2e-29 134.4 214 40.2
SHI08474 Sapria himalayana HOM05D007700 ORTHO05D009669 8.4e-29 132.5 105 59.0
BcaC04g22956 Brassica carinata HOM05D007700 ORTHO05D009669 1.1e-28 132.1 107 59.8
MSTRG.1126 Avicennia marina HOM05D007700 ORTHO05D009669 1.6e-27 128.3 231 39.0
Ah.03g134060 Amaranthus hybridus HOM05D007700 ORTHO05D009669 3.0e-26 124.0 203 38.9
Sc03g0003890 Simmondsia chinensis HOM05D007700 ORTHO05D009669 8.6e-26 122.5 190 40.0
Actinidia17391 Actinidia chinensis HOM05D000192 ORTHO05D000123 1.6e-24 118.2 116 56.9
Glyma.03G117900 Glycine max HOM05D007700 ORTHO05D009669 6.9e-23 112.8 263 36.1
ATR0661G421 Amborella trichopoda HOM05D007700 ORTHO05D009669 7.3e-17 92.8 123 43.1
CDE05G1645 Ceratophyllum demersum HOM05D007700 ORTHO05D009669 7.6e-14 82.8 72 54.2
ATR0739G057 Amborella trichopoda HOM05D007700 ORTHO05D009669 6.0e-11 73.2 241 28.2
HanXRQChr06g0185091 Helianthus annuus HOM05D000424 ORTHO05D000355 6.2e-08 63.2 116 31.0
CAN.G337.135 Capsicum annuum HOM05D006694 ORTHO05D008240 3.1e-07 60.8 116 29.3
Thhalv10001849m.g Eutrema salsugineum HOM05D007660 ORTHO05D009442 4.0e-07 60.5 108 28.7
SGA_v2.0_scaffold19G08834 Striga asiatica HOM05D000162 ORTHO05D000090 6.9e-07 59.7 169 23.7
SGA_v2.0_scaffold19G08853 Striga asiatica HOM05D000162 ORTHO05D000090 6.9e-07 59.7 181 26.0
A07p04270 Brassica napus HOM05D005287 ORTHO05D006893 1.2e-06 58.9 239 30.5
BraA07t28218Z Brassica rapa HOM05D005287 ORTHO05D006893 1.2e-06 58.9 239 30.5
TAR629G1847 Trochodendron aralioides HOM05D007101 ORTHO05D008632 1.2e-06 58.9 173 28.3
Rhsim02G0073500 Rhododendron simsii HOM05D007128 ORTHO05D009059 1.5e-06 58.5 137 27.7
Atru.chr3.1624 Acer truncatum HOM05D007128 ORTHO05D009059 2.0e-06 58.2 118 32.2
QL11p014332 Quercus lobata HOM05D004271 ORTHO05D006011 2.6e-06 57.8 117 25.6
Sp6g36450 Schrenkiella parvula HOM05D006596 ORTHO05D008497 2.6e-06 57.8 160 29.4
MSTRG.13447 Avicennia marina HOM05D005622 ORTHO05D002854 3.4e-06 57.4 112 31.2
Ca_24431_v3 Cicer arietinum L. HOM05D007128 ORTHO05D009059 4.5e-06 57.0 104 32.7
BraA10t45038Z Brassica rapa HOM05D006596 ORTHO05D008497 5.8e-06 56.6 155 29.7
Dinv42632 Davidia involucrata HOM05D007660 ORTHO05D009442 5.8e-06 56.6 100 28.0
Lj3P942T62 Lonicera japonica HOM05D007660 ORTHO05D009442 5.8e-06 56.6 117 24.8
SHI23551 Sapria himalayana HOM05D007128 ORTHO05D009059 5.8e-06 56.6 104 29.8
TAR633G0543 Trochodendron aralioides HOM05D007128 ORTHO05D009059 5.8e-06 56.6 104 30.8
ATR0697G239 Amborella trichopoda HOM05D006596 ORTHO05D008497 7.6e-06 56.2 89 33.7
BolC1t02243H Brassica oleracea HOM05D003975 ORTHO05D009762 7.6e-06 56.2 142 26.1
SGA_v2.0_scaffold32G13356 Striga asiatica HOM05D005622 ORTHO05D002854 7.6e-06 56.2 144 28.5
TAR371G0591 Trochodendron aralioides HOM05D006569 ORTHO05D007515 9.9e-06 55.8 188 27.7


User provided reference genes

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