Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.005G067600 Populus trichocarpa HOM05D004569 ORTHO05D005333 3.8e-74 281.6 160 100.0
CiPaw.01G195800 Carya illinoinensis HOM05D004569 ORTHO05D005333 3.4e-46 188.7 138 73.2
TAR365G0299 Trochodendron aralioides HOM05D004569 ORTHO05D005333 9.2e-44 180.6 137 67.2
Thecc.04G238000 Theobroma cacao HOM05D004569 ORTHO05D005333 1.3e-42 176.8 138 68.1
Duzib052G0452 Durio zibethinus HOM05D004569 ORTHO05D005333 1.1e-41 173.7 138 67.4
Sabra05G0055500 Salix brachista HOM05D004569 ORTHO05D005333 4.3e-41 171.8 92 93.5
Haze_03750 Corylus avellana HOM05D004569 ORTHO05D005333 7.3e-41 171.0 130 67.7
Cfa006984 Carpinus fangiana HOM05D004569 ORTHO05D005333 1.2e-40 170.2 129 69.0
CANSAT78G0168 Cannabis sativa HOM05D004569 ORTHO05D005333 1.6e-40 169.9 138 66.7
Duzib052G0972 Durio zibethinus HOM05D004569 ORTHO05D005333 2.8e-40 169.1 138 65.9
Gohir.A02G034100 Gossypium hirsutum HOM05D004569 ORTHO05D005333 4.7e-40 168.3 138 65.9
Nn1g01867 Nelumbo nucifera HOM05D004569 ORTHO05D005333 8.1e-40 167.5 132 67.4
Peaxi162Scf00192g01617 Petunia axillaris HOM05D004569 ORTHO05D005333 2.4e-39 166.0 139 64.7
Atru.chr4.2374 Acer truncatum HOM05D004569 ORTHO05D005333 3.1e-39 165.6 140 63.6
Gohir.D02G040900 Gossypium hirsutum HOM05D004569 ORTHO05D005333 3.1e-39 165.6 138 65.2
Manes.02G208200 Manihot esculenta HOM05D004569 ORTHO05D005333 4.0e-39 165.2 128 68.0
Nitab4.5_0000321g0230 Nicotiana tabacum HOM05D004569 ORTHO05D005333 1.2e-38 163.7 142 63.4
GSVIVG01036653001 Vitis vinifera HOM05D004569 ORTHO05D005333 2.0e-38 162.9 119 71.4
Dinv07545 Davidia involucrata HOM05D004569 ORTHO05D005333 2.6e-38 162.5 138 60.9
Nitab4.5_0004412g0030 Nicotiana tabacum HOM05D004569 ORTHO05D005333 4.4e-38 161.8 139 64.0
PSO210G1425 Papaver somniferum HOM05D004569 ORTHO05D005333 4.4e-38 161.8 130 64.6
Ciclev10006087m.g Citrus clementina HOM05D004569 ORTHO05D005333 5.8e-38 161.4 134 63.4
Gorai.005G045300 Gossypium raimondii HOM05D004569 ORTHO05D005333 7.6e-38 161.0 135 64.4
PSO832G4509 Papaver somniferum HOM05D004569 ORTHO05D005333 7.6e-38 161.0 135 65.2
Hund09493 Selenicereus undatus HOM05D004569 ORTHO05D005333 2.9e-37 159.1 143 62.2
Sc19g0003960 Simmondsia chinensis HOM05D004569 ORTHO05D005333 3.8e-37 158.7 136 61.8
Lj6g0017152 Lotus japonicus HOM05D004569 ORTHO05D005333 6.4e-37 157.9 136 61.8
arahy.Tifrunner.gnm1.ann1.NDW3GA Arachis hypogaea HOM05D004569 ORTHO05D005333 2.4e-36 156.0 137 61.3
arahy.Tifrunner.gnm1.ann1.SFA2KC Arachis hypogaea HOM05D004569 ORTHO05D005333 2.4e-36 156.0 137 62.0
Lalb_Chr06g0161741 Lupinus albus HOM05D004569 ORTHO05D005333 4.2e-36 155.2 136 60.3
ClCG06G006470 Citrullus lanatus HOM05D004569 ORTHO05D005333 1.2e-35 153.7 138 60.9
CSS0021073 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 2.1e-35 152.9 131 61.1
THA.LOC104827037 Tarenaya hassleriana HOM05D004569 ORTHO05D005333 2.1e-35 152.9 136 61.0
Aqoxy5G00407 Aquilegia oxysepala HOM05D004569 ORTHO05D005333 2.7e-35 152.5 120 61.7
CAN.G135.33 Capsicum annuum HOM05D004569 ORTHO05D005333 4.6e-35 151.8 121 66.1
Aa31LG11G680 Aethionema arabicum HOM05D004569 ORTHO05D005333 7.8e-35 151.0 137 59.9
Phvul.001G230900 Phaseolus vulgaris HOM05D004569 ORTHO05D005333 7.8e-35 151.0 138 58.7
Thhalv10005100m.g Eutrema salsugineum HOM05D004569 ORTHO05D005333 1.3e-34 150.2 137 58.4
Medtr7g034585 Medicago truncatula HOM05D004569 ORTHO05D005333 1.3e-34 150.2 160 53.1
AT5G62950 Arabidopsis thaliana HOM05D004569 ORTHO05D005333 3.0e-34 149.1 140 60.0
TWI63G1720 Tripterygium wilfordii HOM05D004569 ORTHO05D005333 5.1e-34 148.3 138 60.9
SGA_v2.0_scaffold45G17132 Striga asiatica HOM05D004044 ORTHO05D005333 2.5e-33 146.0 132 59.1
CSS0011446 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 3.3e-33 145.6 131 61.1
CARHR276760 Cardamine hirsuta HOM05D004569 ORTHO05D005333 3.3e-33 145.6 138 55.8
Glyma.11G217000 Glycine max HOM05D004569 ORTHO05D005333 3.3e-33 145.6 138 58.7
Sed0021164 Sechium edule HOM05D004569 ORTHO05D005333 3.3e-33 145.6 160 55.6
CSS0049273 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 9.6e-33 144.1 131 59.5
Lj5g0008299 Lotus japonicus HOM05D004569 ORTHO05D005333 9.6e-33 144.1 136 57.4
Glyma.18G039600 Glycine max HOM05D004569 ORTHO05D005333 1.3e-32 143.7 128 60.9
VMungo1383G1439 Vigna mungo HOM05D004569 ORTHO05D005333 1.3e-32 143.7 145 55.2
AL8G39970 Arabidopsis lyrata HOM05D004569 ORTHO05D005333 2.8e-32 142.5 138 57.2
Carub.0004s0755 Capsella rubella HOM05D004569 ORTHO05D005333 2.8e-32 142.5 142 54.2
MBI18_g09782_MAGBIO Magnolia biondii HOM05D004569 ORTHO05D005333 2.8e-32 142.5 128 58.6
Peaxi162Scf00904g00217 Petunia axillaris HOM05D004569 ORTHO05D005333 3.6e-32 142.1 133 59.4
PGR004G1818 Punica granatum HOM05D004569 ORTHO05D005333 3.6e-32 142.1 128 56.2
PGR031G3247 Punica granatum HOM05D004569 ORTHO05D005333 6.2e-32 141.4 135 55.6
Carub.0008s2366 Capsella rubella HOM05D004569 ORTHO05D005333 8.1e-32 141.0 140 55.0
HanXRQChr05g0158611 Helianthus annuus HOM05D004569 ORTHO05D005333 1.1e-31 140.6 119 61.3
HanXRQChr06g0173001 Helianthus annuus HOM05D004569 ORTHO05D005333 1.1e-31 140.6 136 56.6
Rhsim01G0189100 Rhododendron simsii HOM05D004569 ORTHO05D005333 1.1e-31 140.6 136 56.6
ECA246G0155 Erigeron canadensis HOM05D004569 ORTHO05D005333 1.4e-31 140.2 124 59.7
Thhalv10000370m.g Eutrema salsugineum HOM05D004569 ORTHO05D005333 1.4e-31 140.2 132 58.3
Ca_17658_v3 Cicer arietinum L. HOM05D004569 ORTHO05D005333 1.8e-31 139.8 136 54.4
MD13G1198900 Malus domestica HOM05D004569 ORTHO05D005333 3.1e-31 139.0 157 51.0
SalBow2G1663 Salvia bowleyana HOM05D004569 ORTHO05D005333 3.1e-31 139.0 141 53.9
Sp2g26090 Schrenkiella parvula HOM05D004569 ORTHO05D005333 3.1e-31 139.0 136 55.9
AL3G51140 Arabidopsis lyrata HOM05D004569 ORTHO05D005333 4.0e-31 138.7 138 56.5
VMungo1383G2501 Vigna mungo HOM05D004569 ORTHO05D005333 1.2e-30 137.1 130 56.9
CsaV3_2G013430 Cucumis sativus L. HOM05D004569 ORTHO05D005333 1.5e-30 136.7 163 50.3
Nitab4.5_0004743g0130 Nicotiana tabacum HOM05D004569 ORTHO05D005333 3.4e-30 135.6 139 59.0
Cc03_g04240 Coffea canephora HOM05D004569 ORTHO05D005333 4.5e-30 135.2 142 52.1
Oeu042815.1 Olea europaea HOM05D004569 ORTHO05D005333 5.8e-30 134.8 137 54.0
BcaC04g23378 Brassica carinata HOM05D004569 ORTHO05D005333 9.9e-30 134.0 132 55.3
Eucgr.H03416 Eucalyptus grandis HOM05D004569 ORTHO05D005333 9.9e-30 134.0 130 54.6
FvH4_4g01070 Fragaria vesca HOM05D004569 ORTHO05D005333 9.9e-30 134.0 139 54.0
BcaB04g19957 Brassica carinata HOM05D004569 ORTHO05D005333 1.3e-29 133.7 138 55.8
A09p07940 Brassica napus HOM05D004569 ORTHO05D005333 1.7e-29 133.3 137 55.5
AUR62028629 Chenopodium quinoa HOM05D004569 ORTHO05D005333 1.7e-29 133.3 136 54.4
Psat3g163880 Pisum sativum HOM05D004569 ORTHO05D005333 1.7e-29 133.3 138 52.9
C09p08990 Brassica napus HOM05D004569 ORTHO05D005333 2.9e-29 132.5 132 55.3
BolC9t53811H Brassica oleracea HOM05D004569 ORTHO05D005333 2.9e-29 132.5 132 55.3
MELO3C014285.2 Cucumis melo HOM05D004569 ORTHO05D005333 2.9e-29 132.5 156 51.9
Ah.02g110960 Amaranthus hybridus HOM05D000936 ORTHO05D001411 4.9e-29 131.7 122 55.7
SalBow8G0974 Salvia bowleyana HOM05D004569 ORTHO05D005333 4.9e-29 131.7 131 53.4
Sopen11g003670 Solanum pennellii HOM05D004569 ORTHO05D005333 4.9e-29 131.7 155 49.0
TPR.G14863 Trifolium pratense HOM05D004569 ORTHO05D005333 6.4e-29 131.3 130 57.7
CDE05G0131 Ceratophyllum demersum HOM05D004569 ORTHO05D005333 8.4e-29 131.0 126 55.6
FAN12G4296 Fragaria x ananassa HOM05D004569 ORTHO05D005333 8.4e-29 131.0 139 53.2
Prupe.1G020700 Prunus persica HOM05D004569 ORTHO05D005333 1.1e-28 130.6 158 51.3
SGA_v2.0_scaffold353G49718 Striga asiatica HOM05D004569 ORTHO05D005333 1.1e-28 130.6 140 52.9
Dinv40544 Davidia involucrata HOM05D004569 ORTHO05D005333 1.9e-28 129.8 93 69.9
Zm00001eb076250 Zea mays HOM05D004569 ORTHO05D005333 2.4e-28 129.4 147 51.7
BraA09t36445Z Brassica rapa HOM05D004569 ORTHO05D005333 3.2e-28 129.0 135 54.8
Oeu058961.1 Olea europaea HOM05D004569 ORTHO05D005333 3.2e-28 129.0 136 53.7
BcaC03g18183 Brassica carinata HOM05D004569 ORTHO05D005333 7.1e-28 127.9 141 53.9
C02p62490 Brassica napus HOM05D004569 ORTHO05D005333 7.1e-28 127.9 137 54.7
BolC2t12308H Brassica oleracea HOM05D004569 ORTHO05D005333 7.1e-28 127.9 137 54.7
RcHm_v2.0_Chr4g0387641 Rosa chinensis HOM05D004569 ORTHO05D005333 7.1e-28 127.9 140 54.3
Atru.chr4.2398 Acer truncatum HOM05D004569 ORTHO05D005333 9.3e-28 127.5 94 66.0
BcaB07g29675 Brassica carinata HOM05D004569 ORTHO05D005333 9.3e-28 127.5 136 52.9
RcHm_v2.0_Chr6g0280701 Rosa chinensis HOM05D004569 ORTHO05D005333 9.3e-28 127.5 140 54.3
Zm00001eb076270 Zea mays HOM05D004569 ORTHO05D005333 9.3e-28 127.5 147 51.0
Rhsim04G0197700 Rhododendron simsii HOM05D004569 ORTHO05D005333 1.2e-27 127.1 137 56.2
A02p42590 Brassica napus HOM05D004569 ORTHO05D005333 2.7e-27 125.9 134 54.5
BraA02t09187Z Brassica rapa HOM05D004569 ORTHO05D005333 2.7e-27 125.9 134 54.5
Zm00001eb076290 Zea mays HOM05D004569 ORTHO05D005333 3.5e-27 125.6 132 51.5
Zm00001eb310390 Zea mays HOM05D004569 ORTHO05D005333 3.5e-27 125.6 132 51.5
Medtr6g045613 Medicago truncatula HOM05D004569 ORTHO05D005333 4.6e-27 125.2 92 66.3
unitig_748.g7305 Utricularia gibba HOM05D004569 ORTHO05D005333 4.6e-27 125.2 116 55.2
vmacro17995 Vaccinium macrocarpon HOM05D004569 ORTHO05D005333 1.3e-26 123.6 135 50.4
Lsat_1_v5_gn_1_12980 Lactuca sativa HOM05D004569 ORTHO05D005333 1.8e-26 123.2 128 50.0
ATR0829G086 Amborella trichopoda HOM05D004569 ORTHO05D005333 3.0e-26 122.5 121 56.2
Aqoxy2G03457 Aquilegia oxysepala HOM05D004569 ORTHO05D005333 5.1e-26 121.7 83 67.5
BcaC08g46303 Brassica carinata HOM05D004569 ORTHO05D005333 5.1e-26 121.7 138 50.0
FvH4_5g27570 Fragaria vesca HOM05D004569 ORTHO05D005333 5.1e-26 121.7 140 52.1
PGSC0003DMG400027326 Solanum tuberosum HOM05D004569 ORTHO05D005333 6.7e-26 121.3 155 46.5
C06p41320 Brassica napus HOM05D004569 ORTHO05D005333 8.7e-26 120.9 134 50.7
BolC6t39293H Brassica oleracea HOM05D004569 ORTHO05D005333 8.7e-26 120.9 134 50.7
Atru.chr5.182 Acer truncatum HOM05D004569 ORTHO05D005333 1.3e-24 117.1 110 59.1
Pp3c21_14050 Physcomitrium patens HOM05D004569 ORTHO05D005333 2.1e-24 116.3 139 43.9
Migut.B00535 Erythranthe guttata HOM05D004569 ORTHO05D005333 2.8e-24 115.9 135 46.7
Os12g0488800 Oryza sativa ssp. japonica HOM05D004569 ORTHO05D005333 2.8e-24 115.9 92 62.0
SalBow1G3047 Salvia bowleyana HOM05D004569 ORTHO05D005333 6.2e-24 114.8 87 62.1
TAR636G3114 Trochodendron aralioides HOM05D004569 ORTHO05D005333 1.1e-23 114.0 95 63.2
Hma1.2p1_0602F.1_g187570 Hydrangea macrophylla HOM05D004569 ORTHO05D005333 1.4e-23 113.6 85 63.5
Medtr6g045603 Medicago truncatula HOM05D004569 ORTHO05D005333 1.4e-23 113.6 160 45.6
HPP92_022914 Vanilla planifolia HOM05D004569 ORTHO05D005333 1.4e-23 113.6 143 44.1
Psat3g162000 Pisum sativum HOM05D004569 ORTHO05D005333 1.2e-22 110.5 94 56.4
Lsat_1_v5_gn_6_95400 Lactuca sativa HOM05D004569 ORTHO05D005333 1.5e-22 110.2 101 53.5
COL.COLO4_21559 Corchorus olitorius HOM05D004569 ORTHO05D005333 2.0e-22 109.8 113 54.9
BcaC01g02544 Brassica carinata HOM05D004569 ORTHO05D005333 7.6e-22 107.8 142 46.5
C03p63650 Brassica napus HOM05D004569 ORTHO05D005333 7.6e-22 107.8 142 46.5
BolC3t18624H Brassica oleracea HOM05D004569 ORTHO05D005333 7.6e-22 107.8 142 46.5
Dinv07599 Davidia involucrata HOM05D004569 ORTHO05D005333 9.9e-22 107.5 72 70.8
BcaB02g09711 Brassica carinata HOM05D004569 ORTHO05D005333 1.3e-21 107.1 121 50.4
FAN13G2556 Fragaria x ananassa HOM05D004569 ORTHO05D005333 1.3e-21 107.1 135 49.6
CSS0028808 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 5.5e-20 101.7 131 47.3
Mapoly0090s0037 Marchantia polymorpha HOM05D004569 ORTHO05D005333 1.2e-19 100.5 122 41.0
AagrBONN_evm.TU.Sc2ySwM_228.788 Anthoceros agrestis HOM05D004569 ORTHO05D005333 3.0e-18 95.9 140 39.3
BraA06t25922Z Brassica rapa HOM05D004569 ORTHO05D005333 1.1e-17 94.0 116 45.7
AT3G28956 Arabidopsis thaliana HOM05D004569 ORTHO05D005333 1.9e-17 93.2 66 66.7
FAN18G3311 Fragaria x ananassa HOM05D004569 ORTHO05D005333 9.6e-17 90.9 140 44.3
AUR62033084 Chenopodium quinoa HOM05D004569 ORTHO05D005333 2.8e-16 89.4 146 37.7
arahy.Tifrunner.gnm1.ann1.LSLG48 Arachis hypogaea HOM05D001291 ORTHO05D005333 5.3e-15 85.1 92 50.0
SEGI_13490 Sequoiadendron giganteum HOM05D004569 ORTHO05D000001 4.5e-14 82.0 94 43.6
SMO343G0078 Selaginella moellendorffii HOM05D004569 ORTHO05D005333 1.0e-13 80.9 130 36.2
GSVIVG01008529001 Vitis vinifera HOM05D004569 ORTHO05D005333 6.5e-13 78.2 52 69.2
Hma1.2p1_0549F.1_g176970 Hydrangea macrophylla HOM05D004569 ORTHO05D005333 3.0e-10 69.3 89 41.6
CBR_g19683 Chara braunii HOM05D004569 ORTHO05D005333 7.4e-09 64.7 87 40.2
AUR62008054 Chenopodium quinoa HOM05D000001 ORTHO05D000501 7.4e-09 64.7 81 46.9
Phvul.001G219600 Phaseolus vulgaris HOM05D004569 ORTHO05D005333 7.4e-09 64.7 128 35.9
SEGI_07191 Sequoiadendron giganteum HOM05D004569 ORTHO05D005333 1.6e-08 63.5 68 47.1
Lj6C645G5 Lonicera japonica HOM05D004569 ORTHO05D005333 2.2e-08 63.2 132 34.8
SalBow2G3500 Salvia bowleyana HOM05D000011 ORTHO05D000018 3.1e-07 59.3 43 65.1
vmacro08367 Vaccinium macrocarpon HOM05D004569 ORTHO05D005333 2.6e-06 56.2 132 31.8


User provided reference genes

Program Settings