Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.004G214400 Populus trichocarpa HOM05D004760 ORTHO05D006114 7.7e-65 250.4 129 100.0
TWI79G1159 Tripterygium wilfordii HOM05D004760 ORTHO05D006114 1.9e-55 219.2 128 88.3
Ciclev10002842m.g Citrus clementina HOM05D004760 ORTHO05D006114 3.2e-55 218.4 127 87.4
Dinv29358 Davidia involucrata HOM05D004760 ORTHO05D006114 5.5e-55 217.6 127 85.0
Gohir.A03G030600 Gossypium hirsutum HOM05D004760 ORTHO05D006114 5.5e-55 217.6 127 84.3
Gohir.D03G137800 Gossypium hirsutum HOM05D004760 ORTHO05D006114 1.6e-54 216.1 127 84.3
Gorai.003G144700 Gossypium raimondii HOM05D004760 ORTHO05D006114 1.6e-54 216.1 127 84.3
Atru.chr10.811 Acer truncatum HOM05D004760 ORTHO05D006114 2.7e-54 215.3 125 85.6
Manes.15G173300 Manihot esculenta HOM05D004760 ORTHO05D006114 2.7e-54 215.3 127 85.8
Atru.chr10.822 Acer truncatum HOM05D004760 ORTHO05D006114 3.6e-54 214.9 125 85.6
Thecc.09G348500 Theobroma cacao HOM05D004760 ORTHO05D006114 4.7e-54 214.5 127 81.9
COL.COLO4_03696 Corchorus olitorius HOM05D004760 ORTHO05D006114 1.4e-53 213.0 127 82.7
Duzib150G1663 Durio zibethinus HOM05D004760 ORTHO05D006114 1.8e-53 212.6 127 81.9
QL01p015831 Quercus lobata HOM05D004760 ORTHO05D006114 1.8e-53 212.6 125 84.0
GSVIVG01031504001 Vitis vinifera HOM05D004760 ORTHO05D006114 1.8e-53 212.6 129 82.9
Rhsim01G0212000 Rhododendron simsii HOM05D004760 ORTHO05D006114 3.0e-53 211.8 126 86.5
ClCG02G021440 Citrullus lanatus HOM05D004760 ORTHO05D006114 8.8e-53 210.3 129 83.7
CSS0038756 Camellia sinensis var. sinensis HOM05D004760 ORTHO05D006114 2.0e-52 209.1 125 84.0
CAN.G546.10 Capsicum annuum HOM05D004760 ORTHO05D006114 2.0e-52 209.1 129 79.8
vmacro14407 Vaccinium macrocarpon HOM05D004760 ORTHO05D006114 2.6e-52 208.8 126 85.7
Cfa010341 Carpinus fangiana HOM05D004760 ORTHO05D006114 3.3e-52 208.4 127 83.5
Manes.04G015300 Manihot esculenta HOM05D004760 ORTHO05D006114 4.4e-52 208.0 127 83.5
CANSAT80G1575 Cannabis sativa HOM05D004760 ORTHO05D006114 5.7e-52 207.6 125 84.0
Prupe.6G108700 Prunus persica HOM05D004760 ORTHO05D006114 5.7e-52 207.6 127 80.3
Haze_23747 Corylus avellana HOM05D004760 ORTHO05D006114 9.7e-52 206.8 127 82.7
Oeu014013.2 Olea europaea HOM05D004760 ORTHO05D006114 1.7e-51 206.1 128 81.2
SalBow3G2862 Salvia bowleyana HOM05D004760 ORTHO05D006114 2.2e-51 205.7 121 86.8
CsaV3_4G002110 Cucumis sativus L. HOM05D004760 ORTHO05D006114 2.8e-51 205.3 118 85.6
PGSC0003DMG400008072 Solanum tuberosum HOM05D004760 ORTHO05D006114 2.8e-51 205.3 129 79.1
PGSC0003DMG400008071 Solanum tuberosum HOM05D004760 ORTHO05D006114 3.7e-51 204.9 129 78.3
Oeu013537.1 Olea europaea HOM05D004760 ORTHO05D006114 4.8e-51 204.5 128 80.5
Sopen11g027800 Solanum pennellii HOM05D004760 ORTHO05D006114 4.8e-51 204.5 125 80.8
PGSC0003DMG400008118 Solanum tuberosum HOM05D004760 ORTHO05D006114 4.8e-51 204.5 129 78.3
Cpa.g.sc94.2 Carica papaya HOM05D004760 ORTHO05D006114 6.3e-51 204.1 119 84.9
Migut.D02262 Erythranthe guttata HOM05D004760 ORTHO05D006114 8.2e-51 203.8 120 85.8
FAN11G0015 Fragaria x ananassa HOM05D004760 ORTHO05D006114 8.2e-51 203.8 125 80.8
MELO3C033128.2 Cucumis melo HOM05D004760 ORTHO05D006114 1.1e-50 203.4 118 84.7
FAN21G0726 Fragaria x ananassa HOM05D004760 ORTHO05D006114 1.1e-50 203.4 125 79.2
Eucgr.C00623 Eucalyptus grandis HOM05D004760 ORTHO05D006114 1.4e-50 203.0 127 81.1
Lsat_1_v5_gn_2_99521 Lactuca sativa HOM05D004760 ORTHO05D006114 1.4e-50 203.0 127 78.7
MSTRG.22442 Avicennia marina HOM05D004760 ORTHO05D006114 1.8e-50 202.6 118 83.1
TAR636G2244 Trochodendron aralioides HOM05D004760 ORTHO05D006114 1.8e-50 202.6 119 84.0
CiPaw.14G087800 Carya illinoinensis HOM05D004760 ORTHO05D006114 3.1e-50 201.8 121 83.5
FAN25G2761 Fragaria x ananassa HOM05D004760 ORTHO05D006114 3.1e-50 201.8 125 79.2
TWI31G0427 Tripterygium wilfordii HOM05D004760 ORTHO05D006114 4.1e-50 201.4 119 84.9
Aqoxy1G01159 Aquilegia oxysepala HOM05D004760 ORTHO05D006114 7.0e-50 200.7 127 78.7
Sabra04G0145500 Salix brachista HOM05D004760 ORTHO05D006114 7.0e-50 200.7 110 92.7
Lj1C207G1 Lonicera japonica HOM05D000681 ORTHO05D003832 2.0e-49 199.1 118 83.1
ECA233G3649 Erigeron canadensis HOM05D004760 ORTHO05D006114 2.6e-49 198.7 119 82.4
MD00G1033500 Malus domestica HOM05D004760 ORTHO05D006114 2.6e-49 198.7 125 80.8
PGSC0003DMG400005521 Solanum tuberosum HOM05D004760 ORTHO05D006114 3.5e-49 198.4 129 76.7
Lj3g0014185 Lotus japonicus HOM05D004760 ORTHO05D006114 5.9e-49 197.6 127 77.2
Cc01_g10530 Coffea canephora HOM05D004760 ORTHO05D006114 1.3e-48 196.4 121 77.7
THA.LOC104810873 Tarenaya hassleriana HOM05D004760 ORTHO05D006114 1.7e-48 196.1 119 77.3
Sed0008060 Sechium edule HOM05D004760 ORTHO05D006114 2.2e-48 195.7 127 76.4
PGR083G1146 Punica granatum HOM05D004760 ORTHO05D006114 2.9e-48 195.3 128 77.3
AUR62034436 Chenopodium quinoa HOM05D004760 ORTHO05D006114 3.8e-48 194.9 117 80.3
CARHR150950 Cardamine hirsuta HOM05D004760 ORTHO05D006114 5.0e-48 194.5 128 71.9
A06p21630 Brassica napus HOM05D004760 ORTHO05D006114 1.1e-47 193.4 128 71.1
BraA06t25253Z Brassica rapa HOM05D004760 ORTHO05D006114 1.1e-47 193.4 128 71.1
Sp5g16240 Schrenkiella parvula HOM05D004760 ORTHO05D006114 1.5e-47 193.0 117 77.8
BcaC01g02002 Brassica carinata HOM05D004760 ORTHO05D006114 1.9e-47 192.6 117 76.9
C03p69650 Brassica napus HOM05D004760 ORTHO05D006114 1.9e-47 192.6 117 76.9
BolC3t19223H Brassica oleracea HOM05D004760 ORTHO05D006114 1.9e-47 192.6 117 76.9
DCAR_013702 Daucus carota HOM05D004760 ORTHO05D006114 1.9e-47 192.6 123 78.9
AUR62014927 Chenopodium quinoa HOM05D004760 ORTHO05D006114 3.2e-47 191.8 119 79.8
Thhalv10002715m.g Eutrema salsugineum HOM05D004760 ORTHO05D006114 3.2e-47 191.8 117 76.9
Lalb_Chr01g0004501 Lupinus albus HOM05D004760 ORTHO05D006114 4.2e-47 191.4 126 77.8
arahy.Tifrunner.gnm1.ann1.TWBW4W Arachis hypogaea HOM05D004760 ORTHO05D006114 5.5e-47 191.0 125 77.6
BcaB01g01128 Brassica carinata HOM05D004760 ORTHO05D006114 5.5e-47 191.0 117 76.9
AT3G45020 Arabidopsis thaliana HOM05D004760 ORTHO05D006114 7.2e-47 190.7 116 77.6
arahy.Tifrunner.gnm1.ann1.HQ4852 Arachis hypogaea HOM05D004760 ORTHO05D006114 7.2e-47 190.7 125 76.8
arahy.Tifrunner.gnm1.ann1.KI0H1T Arachis hypogaea HOM05D004760 ORTHO05D006114 1.6e-46 189.5 125 76.8
AL5G23480 Arabidopsis lyrata HOM05D004760 ORTHO05D006114 2.1e-46 189.1 116 76.7
Hund01473 Selenicereus undatus HOM05D004760 ORTHO05D006114 2.1e-46 189.1 120 78.3
VMungo0331G0086 Vigna mungo HOM05D004760 ORTHO05D006114 2.7e-46 188.7 119 77.3
Carub.0005s1081 Capsella rubella HOM05D004760 ORTHO05D006114 4.7e-46 188.0 114 78.1
Nitab4.5_0002033g0060 Nicotiana tabacum HOM05D004760 ORTHO05D006114 4.7e-46 188.0 113 84.1
Aa31LG4G14120 Aethionema arabicum HOM05D004760 ORTHO05D006114 6.1e-46 187.6 127 70.9
C01p34030 Brassica napus HOM05D004760 ORTHO05D006114 1.0e-45 186.8 124 68.5
BolC1t03372H Brassica oleracea HOM05D004760 ORTHO05D006114 1.0e-45 186.8 124 68.5
Ah.15g090630 Amaranthus hybridus HOM05D004760 ORTHO05D006114 1.4e-45 186.4 117 77.8
SGA_v2.0_scaffold263G45970 Striga asiatica HOM05D004760 ORTHO05D006114 1.4e-45 186.4 116 78.4
PGSC0003DMG400035806 Solanum tuberosum HOM05D004760 ORTHO05D006114 2.3e-45 185.7 124 75.0
FAN16G0053 Fragaria x ananassa HOM05D004760 ORTHO05D006114 3.0e-45 185.3 127 73.2
Actinidia07172 Actinidia chinensis HOM05D004760 ORTHO05D006114 4.0e-45 184.9 105 87.6
Glyma.03G099400 Glycine max HOM05D004760 ORTHO05D006114 4.0e-45 184.9 119 75.6
Sc06g0010990 Simmondsia chinensis HOM05D004760 ORTHO05D006114 4.0e-45 184.9 117 76.1
Sc06g0010910 Simmondsia chinensis HOM05D004760 ORTHO05D006114 5.2e-45 184.5 117 76.1
TPR.G21885 Trifolium pratense HOM05D004760 ORTHO05D006114 5.2e-45 184.5 119 75.6
Rhsim13G0099000 Rhododendron simsii HOM05D004760 ORTHO05D006114 8.8e-45 183.7 108 86.1
HanXRQChr14g0432111 Helianthus annuus HOM05D004760 ORTHO05D006114 1.2e-44 183.3 107 83.2
unitig_21.g20191 Utricularia gibba HOM05D001235 ORTHO05D005684 1.5e-44 183.0 117 72.6
arahy.Tifrunner.gnm1.ann1.DTBR3Z Arachis hypogaea HOM05D004760 ORTHO05D006114 2.0e-44 182.6 125 73.6
BcaC09g49679 Brassica carinata HOM05D004760 ORTHO05D006114 2.0e-44 182.6 124 66.9
Psat3g094560 Pisum sativum HOM05D004760 ORTHO05D006114 2.0e-44 182.6 119 75.6
SHI30132 Sapria himalayana HOM05D004760 ORTHO05D006114 2.0e-44 182.6 117 75.2
Ca_08122_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 5.7e-44 181.0 119 75.6
RcHm_v2.0_Chr4g0444611 Rosa chinensis HOM05D004760 ORTHO05D006114 7.5e-44 180.6 123 74.8
Medtr7g083650 Medicago truncatula HOM05D004760 ORTHO05D006114 6.3e-43 177.6 119 73.9
Eucgr.B02540 Eucalyptus grandis HOM05D004760 ORTHO05D006114 3.1e-42 175.3 118 76.3
MBI18_g16202_MAGBIO Magnolia biondii HOM05D004760 ORTHO05D006114 3.5e-41 171.8 127 66.9
PGR102G1962 Punica granatum HOM05D004760 ORTHO05D006114 7.7e-41 170.6 123 69.9
Haze_20543 Corylus avellana HOM05D004760 ORTHO05D006114 8.5e-40 167.2 123 64.2
ECA240G4818 Erigeron canadensis HOM05D007880 ORTHO05D003386 1.9e-39 166.0 99 84.8
Nitab4.5_0002186g0070 Nicotiana tabacum HOM05D004760 ORTHO05D006114 1.9e-39 166.0 110 77.3
EL10Ac9g22581 Beta vulgaris HOM05D004760 ORTHO05D006114 2.5e-39 165.6 101 78.2
RcHm_v2.0_Chr5g0057731 Rosa chinensis HOM05D004760 ORTHO05D006114 9.4e-39 163.7 98 83.7
CDE09G0496 Ceratophyllum demersum HOM05D004760 ORTHO05D001676 1.2e-38 163.3 119 69.7
Nn7g38254 Nelumbo nucifera HOM05D004760 ORTHO05D006114 2.1e-38 162.5 98 83.7
HPP92_025344 Vanilla planifolia HOM05D004760 ORTHO05D006114 2.1e-38 162.5 120 66.7
ECA238G2603 Erigeron canadensis HOM05D004760 ORTHO05D006114 4.7e-38 161.4 99 77.8
FvH4_3g31090 Fragaria vesca HOM05D004760 ORTHO05D006114 6.1e-38 161.0 98 80.6
CDE02G4002 Ceratophyllum demersum HOM05D004760 ORTHO05D006114 8.0e-38 160.6 119 68.9
PSO339G3989 Papaver somniferum HOM05D004760 ORTHO05D006114 1.0e-37 160.2 120 70.0
Actinidia13489 Actinidia chinensis HOM05D004760 ORTHO05D006114 1.8e-37 159.5 90 85.6
Os09g0549700 Oryza sativa ssp. japonica HOM05D004760 ORTHO05D006114 1.2e-36 156.8 118 66.9
BcaB05g23055 Brassica carinata HOM05D004760 ORTHO05D006114 1.5e-36 156.4 119 68.1
PSO801G0746 Papaver somniferum HOM05D004760 ORTHO05D006114 1.5e-36 156.4 119 67.2
Zm00001eb320920 Zea mays HOM05D004760 ORTHO05D006114 6.3e-35 151.0 118 64.4
A01p26650 Brassica napus HOM05D004760 ORTHO05D006114 1.4e-34 149.8 98 73.5
BraA01t02596Z Brassica rapa HOM05D004760 ORTHO05D006114 1.4e-34 149.8 98 73.5
Dinv37316 Davidia involucrata HOM05D004760 ORTHO05D006114 3.1e-34 148.7 95 76.8
arahy.Tifrunner.gnm1.ann1.0NB9P2 Arachis hypogaea HOM05D004760 ORTHO05D006114 4.1e-34 148.3 112 63.4
Actinidia14009 Actinidia chinensis HOM05D004760 ORTHO05D006114 7.7e-33 144.1 86 83.7
Medtr1g080050 Medicago truncatula HOM05D004760 ORTHO05D006114 7.7e-33 144.1 119 63.9
arahy.Tifrunner.gnm1.ann1.JVX2H3 Arachis hypogaea HOM05D004760 ORTHO05D002586 1.7e-32 142.9 109 66.1
Peaxi162Scf00351g00053 Petunia axillaris HOM05D004760 ORTHO05D006114 1.5e-31 139.8 89 73.0
Lalb_Chr02g0155851 Lupinus albus HOM05D004760 ORTHO05D006114 5.5e-31 137.9 119 54.6
arahy.Tifrunner.gnm1.ann1.PKX4UH Arachis hypogaea HOM05D004760 ORTHO05D006114 9.5e-31 137.1 100 69.0
CsaV3_6G014220 Cucumis sativus L. HOM05D004760 ORTHO05D006114 3.6e-30 135.2 124 62.1
Hund12449 Selenicereus undatus HOM05D004760 ORTHO05D006114 3.6e-30 135.2 88 75.0
QL11p023169 Quercus lobata HOM05D004760 ORTHO05D006114 1.4e-29 133.3 83 74.7
Ca_06514_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 2.0e-28 129.4 102 67.6
ATR0152G025 Amborella trichopoda HOM05D004760 ORTHO05D006114 7.5e-28 127.5 106 60.4
SHI02979 Sapria himalayana HOM05D004760 ORTHO05D006114 1.3e-27 126.7 95 60.0
VMungo0720G1193 Vigna mungo HOM05D004760 ORTHO05D006114 4.9e-27 124.8 114 50.9
DCAR_008992 Daucus carota HOM05D004760 ORTHO05D006114 2.4e-26 122.5 119 47.1
Medtr1g063230 Medicago truncatula HOM05D004760 ORTHO05D006114 4.1e-26 121.7 114 50.0
TPR.G11257 Trifolium pratense HOM05D004760 ORTHO05D006114 5.4e-26 121.3 117 49.6
Phvul.007G219200 Phaseolus vulgaris HOM05D004760 ORTHO05D006114 2.0e-25 119.4 118 48.3
Lj5g0000803 Lotus japonicus HOM05D004760 ORTHO05D006114 3.5e-25 118.6 118 52.5
arahy.Tifrunner.gnm1.ann1.B7429M Arachis hypogaea HOM05D004760 ORTHO05D000042 4.5e-25 118.2 127 53.5
SEGI_39147 Sequoiadendron giganteum HOM05D004760 ORTHO05D006114 4.5e-25 118.2 116 55.2
Glyma.10G055400 Glycine max HOM05D004760 ORTHO05D006114 5.9e-25 117.9 125 48.8
arahy.Tifrunner.gnm1.ann1.P1K6TB Arachis hypogaea HOM05D004760 ORTHO05D006114 7.8e-25 117.5 84 72.6
Psat6g074200 Pisum sativum HOM05D004760 ORTHO05D006114 7.8e-25 117.5 117 48.7
Sc20g0005490 Simmondsia chinensis HOM05D004760 ORTHO05D006114 1.3e-24 116.7 118 52.5
Ca_11503_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 1.9e-23 112.8 108 52.8
AUR62040351 Chenopodium quinoa HOM05D004760 ORTHO05D039006 2.1e-22 109.4 129 47.3
MELO3C026909.2 Cucumis melo HOM05D004760 ORTHO05D006114 5.2e-21 104.8 76 76.3
ECA233G6109 Erigeron canadensis HOM05D000473 ORTHO05D001219 1.5e-20 103.2 61 82.0
EL10Ac7g16630 Beta vulgaris HOM05D004760 ORTHO05D039006 2.0e-20 102.8 130 43.8
Solyc11g069080.3 Solanum lycopersicum HOM05D004760 ORTHO05D006114 2.6e-20 102.4 65 73.8
Lalb_Chr02g0155971 Lupinus albus HOM05D004760 ORTHO05D006114 9.2e-10 67.4 60 46.7
AUR62042505 Chenopodium quinoa HOM05D004760 ORTHO05D138125 3.0e-08 62.4 75 46.7
Nn7g38187 Nelumbo nucifera HOM05D004760 ORTHO05D006114 1.9e-07 59.7 35 74.3


User provided reference genes

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