Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.004G161800 Populus trichocarpa HOM05D004463 ORTHO05D004724 3.6e-66 255.8 254 100.0
Sabra04G0108800 Salix brachista HOM05D004463 ORTHO05D004724 6.6e-52 208.4 237 94.5
QL11p046341 Quercus lobata HOM05D004463 ORTHO05D004724 2.2e-47 193.4 258 86.8
Glyma.04G008700 Glycine max HOM05D004463 ORTHO05D004724 2.9e-47 193.0 258 84.5
Gohir.A03G199000 Gossypium hirsutum HOM05D004463 ORTHO05D004724 7.0e-46 188.3 265 85.3
Glyma.06G008500 Glycine max HOM05D004463 ORTHO05D004724 1.2e-45 187.6 261 85.4
Gohir.D02G220400 Gossypium hirsutum HOM05D004463 ORTHO05D004724 1.6e-45 187.2 266 83.8
arahy.Tifrunner.gnm1.ann1.0JY1T4 Arachis hypogaea HOM05D004463 ORTHO05D004724 3.5e-45 186.0 256 87.5
arahy.Tifrunner.gnm1.ann1.2L6AT5 Arachis hypogaea HOM05D004463 ORTHO05D004724 3.5e-45 186.0 256 87.5
MELO3C013423.2 Cucumis melo HOM05D004463 ORTHO05D004724 1.0e-44 184.5 262 85.5
Manes.15G189900 Manihot esculenta HOM05D004463 ORTHO05D004724 1.0e-44 184.5 252 85.3
Phvul.009G003600 Phaseolus vulgaris HOM05D004463 ORTHO05D004724 1.0e-44 184.5 264 84.1
ClCG02G004610 Citrullus lanatus HOM05D004463 ORTHO05D004724 1.3e-44 184.1 262 85.5
CsaV3_7G000350 Cucumis sativus L. HOM05D004463 ORTHO05D004724 1.3e-44 184.1 262 85.5
Duzib248G1389 Durio zibethinus HOM05D004463 ORTHO05D004724 1.3e-44 184.1 255 87.1
VMungo1309G0843 Vigna mungo HOM05D000018 ORTHO05D001040 1.7e-44 183.7 261 84.7
Gorai.005G248300 Gossypium raimondii HOM05D004463 ORTHO05D004724 3.0e-44 183.0 266 75.2
Sed0022229 Sechium edule HOM05D004463 ORTHO05D004724 5.6e-43 178.7 260 85.0
COL.COLO4_26036 Corchorus olitorius HOM05D004463 ORTHO05D004724 1.6e-42 177.2 256 86.3
MD10G1063900 Malus domestica HOM05D004463 ORTHO05D004724 1.6e-42 177.2 262 83.6
Manes.17G001400 Manihot esculenta HOM05D004463 ORTHO05D004724 1.6e-42 177.2 252 86.1
Atru.chr5.3137 Acer truncatum HOM05D004463 ORTHO05D004724 2.8e-42 176.4 251 87.3
Lalb_Chr23g0265191 Lupinus albus HOM05D004463 ORTHO05D004724 1.4e-41 174.1 262 84.4
Ciclev10029089m.g Citrus clementina HOM05D004463 ORTHO05D004724 1.8e-41 173.7 257 84.0
CANSAT11G2458 Cannabis sativa HOM05D004463 ORTHO05D004724 3.1e-41 172.9 263 83.3
Lj1g0018700 Lotus japonicus HOM05D004463 ORTHO05D004724 5.2e-41 172.2 258 85.3
PGR042G1049 Punica granatum HOM05D004463 ORTHO05D004724 5.2e-41 172.2 258 81.8
MD00G1040200 Malus domestica HOM05D004463 ORTHO05D004724 1.5e-40 170.6 264 81.4
RcHm_v2.0_Chr6g0267601 Rosa chinensis HOM05D004463 ORTHO05D004724 1.5e-40 170.6 264 80.3
Cpa.g.sc150.22 Carica papaya HOM05D004463 ORTHO05D004724 4.4e-40 169.1 261 83.5
Ca_15338_v3 Cicer arietinum L. HOM05D004463 ORTHO05D004724 6.4e-39 165.2 262 82.4
TPR.G32219 Trifolium pratense HOM05D004463 ORTHO05D004724 2.1e-37 160.2 272 79.0
CiPaw.13G045000 Carya illinoinensis HOM05D004463 ORTHO05D004724 3.5e-37 159.5 252 82.9
Prupe.8G085500 Prunus persica HOM05D004463 ORTHO05D004724 6.0e-37 158.7 263 73.0
CiPaw.14G035900 Carya illinoinensis HOM05D004463 ORTHO05D004724 5.1e-36 155.6 252 80.2
Dinv42004 Davidia involucrata HOM05D004463 ORTHO05D004724 6.6e-36 155.2 251 79.7
CiPaw.06G128800 Carya illinoinensis HOM05D004463 ORTHO05D004724 1.2e-34 151.0 256 79.3
CAN.G95.2 Capsicum annuum HOM05D004463 ORTHO05D004724 2.8e-34 149.8 250 78.4
Thecc.02G075900 Theobroma cacao HOM05D004463 ORTHO05D004724 4.7e-34 149.1 255 82.7
TWI31G1301 Tripterygium wilfordii HOM05D004463 ORTHO05D004724 2.3e-33 146.7 262 75.2
GSVIVG01024180001 Vitis vinifera HOM05D004463 ORTHO05D004724 3.8e-31 139.4 251 77.7
Duzib052G0336 Durio zibethinus HOM05D004463 ORTHO05D004724 8.4e-31 138.3 255 78.0
Eucgr.I01324 Eucalyptus grandis HOM05D004463 ORTHO05D004724 1.9e-30 137.1 257 75.5
Oeu036635.1 Olea europaea HOM05D004463 ORTHO05D004724 5.4e-30 135.6 253 78.7
Cc02_g16980 Coffea canephora HOM05D004463 ORTHO05D004724 1.6e-29 134.0 257 78.6
Actinidia27858 Actinidia chinensis HOM05D000578 ORTHO05D000422 2.1e-29 133.7 255 74.5
Oeu055628.1 Olea europaea HOM05D004463 ORTHO05D004724 2.1e-29 133.7 234 79.5
Hund00218 Selenicereus undatus HOM05D004463 ORTHO05D004724 2.7e-29 133.3 234 74.8
Haze_03437 Corylus avellana HOM05D004463 ORTHO05D004724 3.5e-29 132.9 216 85.6
Psat5g004400 Pisum sativum HOM05D004463 ORTHO05D004724 1.3e-28 131.0 257 58.4
HanXRQChr05g0143421 Helianthus annuus HOM05D004463 ORTHO05D004724 1.7e-28 130.6 251 78.5
DCAR_022913 Daucus carota HOM05D004463 ORTHO05D004724 3.0e-28 129.8 260 76.5
Dinv23459 Davidia involucrata HOM05D004463 ORTHO05D004724 3.9e-28 129.4 251 76.1
Sed0016215 Sechium edule HOM05D004463 ORTHO05D004724 6.6e-28 128.6 259 77.2
Hund26868 Selenicereus undatus HOM05D004463 ORTHO05D004724 8.6e-28 128.3 260 73.1
Sopen10g024240 Solanum pennellii HOM05D004463 ORTHO05D004724 1.9e-27 127.1 261 73.6
Nitab4.5_0001317g0040 Nicotiana tabacum HOM05D004463 ORTHO05D004724 2.5e-27 126.7 234 80.3
Solyc10g054330.3 Solanum lycopersicum HOM05D004463 ORTHO05D004724 2.5e-27 126.7 262 73.3
PGSC0003DMG400026665 Solanum tuberosum HOM05D004463 ORTHO05D004724 3.3e-27 126.3 263 73.0
Psat5g004520 Pisum sativum HOM05D004463 ORTHO05D004724 4.3e-27 125.9 257 52.1
ECA232G1454 Erigeron canadensis HOM05D004463 ORTHO05D004724 1.2e-26 124.4 256 75.0
FAN20G1990 Fragaria x ananassa HOM05D004463 ORTHO05D004724 3.6e-26 122.9 267 74.2
Actinidia00571 Actinidia chinensis HOM05D004463 ORTHO05D004724 6.2e-26 122.1 253 70.8
THA.LOC104807766 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 1.4e-25 120.9 261 71.6
Manes.05G152600 Manihot esculenta HOM05D004463 ORTHO05D004724 3.1e-25 119.8 252 70.6
FAN27G0878 Fragaria x ananassa HOM05D004463 ORTHO05D004724 8.9e-25 118.2 266 73.7
TWI75G1243 Tripterygium wilfordii HOM05D004463 ORTHO05D004724 8.9e-25 118.2 272 61.8
Oeu046135.1 Olea europaea HOM05D004463 ORTHO05D004724 1.2e-24 117.9 234 77.8
FvH4_2g10323 Fragaria vesca HOM05D004463 ORTHO05D004724 2.6e-24 116.7 249 74.3
FAN15G3389 Fragaria x ananassa HOM05D004463 ORTHO05D004724 9.9e-24 114.8 263 73.8
THA.LOC104813804 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 9.9e-24 114.8 251 76.5
FAN24G1814 Fragaria x ananassa HOM05D004463 ORTHO05D004724 2.2e-23 113.6 247 74.5
Duzib132G0628 Durio zibethinus HOM05D004463 ORTHO05D004724 3.8e-23 112.8 214 83.6
Dinv39485 Davidia involucrata HOM05D004463 ORTHO05D004724 1.1e-22 111.3 206 63.1
Zm00001eb393940 Zea mays HOM05D004463 ORTHO05D004724 2.4e-22 110.2 252 64.7
Rhsim05G0068600 Rhododendron simsii HOM05D004463 ORTHO05D004724 2.7e-21 106.7 262 73.3
GSVIVG01009823001 Vitis vinifera HOM05D004463 ORTHO05D004724 3.9e-20 102.8 229 76.9
Hma1.2p1_0066F.1_g035800 Hydrangea macrophylla HOM05D004463 ORTHO05D004724 3.3e-19 99.8 260 69.2
Peaxi162Scf00538g00125 Petunia axillaris HOM05D004463 ORTHO05D004724 3.3e-19 99.8 237 39.2
CSS0016875 Camellia sinensis var. sinensis HOM05D004463 ORTHO05D004724 3.6e-18 96.3 209 81.8
Nn5g29212 Nelumbo nucifera HOM05D004463 ORTHO05D004724 1.4e-17 94.4 133 82.0
TPR.G32170 Trifolium pratense HOM05D004463 ORTHO05D004724 1.4e-17 94.4 131 84.7
AL7G10930 Arabidopsis lyrata HOM05D004463 ORTHO05D004724 3.1e-17 93.2 258 70.5
CDE02G2851 Ceratophyllum demersum HOM05D003292 ORTHO05D004237 3.1e-17 93.2 235 72.3
Atru.chr13.360 Acer truncatum HOM05D004463 ORTHO05D004724 9.0e-17 91.7 240 72.9
Aqoxy4G02979 Aquilegia oxysepala HOM05D004463 ORTHO05D004724 1.5e-16 90.9 253 71.9
C07p63410 Brassica napus HOM05D004463 ORTHO05D004724 1.5e-16 90.9 242 69.8
BolC7t46753H Brassica oleracea HOM05D004463 ORTHO05D004724 1.5e-16 90.9 259 67.2
THA.LOC104809337 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 3.4e-16 89.7 210 76.2
Os10g0545300 Oryza sativa ssp. japonica HOM05D004463 ORTHO05D004724 7.6e-16 88.6 238 71.4
Potri.005G234700 Populus trichocarpa HOM05D004463 ORTHO05D004724 7.6e-16 88.6 236 68.2
A06p48750 Brassica napus HOM05D004463 ORTHO05D004724 2.2e-15 87.0 150 77.3
Ciclev10002195m.g Citrus clementina HOM05D004463 ORTHO05D004724 2.2e-15 87.0 244 70.1
Sabra05G0180900 Salix brachista HOM05D004463 ORTHO05D004724 2.2e-15 87.0 236 67.8
BraA06t27741Z Brassica rapa HOM05D004463 ORTHO05D004724 3.8e-15 86.3 259 67.2
Migut.B00180 Erythranthe guttata HOM05D004463 ORTHO05D004724 3.8e-15 86.3 185 83.8
HPP92_007060 Vanilla planifolia HOM05D004463 ORTHO05D004724 1.9e-14 84.0 259 68.3
THA.LOC104804116 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 9.3e-14 81.6 66 63.6
Thecc.08G037600 Theobroma cacao HOM05D004463 ORTHO05D004724 9.3e-14 81.6 51 72.5
Sc25g0002840 Simmondsia chinensis HOM05D004463 ORTHO05D004724 2.1e-13 80.5 50 70.0
Lj9P382T32 Lonicera japonica HOM05D004463 ORTHO05D004724 4.6e-13 79.3 130 81.5
PSO384G1624 Papaver somniferum HOM05D004463 ORTHO05D004724 4.6e-13 79.3 234 72.6
EL10Ac1g00556 Beta vulgaris HOM05D004463 ORTHO05D004724 6.0e-13 79.0 331 56.2
A07p41130 Brassica napus HOM05D004463 ORTHO05D004724 1.3e-12 77.8 67 67.2
Rhsim11G0183400 Rhododendron simsii HOM05D000078 ORTHO05D004724 1.3e-12 77.8 51 72.5
Aa31LG4G5800 Aethionema arabicum HOM05D004463 ORTHO05D004724 1.8e-12 77.4 244 66.8
CARHR247750 Cardamine hirsuta HOM05D004463 ORTHO05D004724 2.3e-12 77.0 51 64.7
C06p49550 Brassica napus HOM05D004463 ORTHO05D004724 5.1e-12 75.9 52 67.3
BolC6t39994H Brassica oleracea HOM05D004463 ORTHO05D004724 5.1e-12 75.9 52 67.3
MBI19_g03564_MAGBIO Magnolia biondii HOM05D004463 ORTHO05D004724 6.7e-12 75.5 208 75.5
AL2G35540 Arabidopsis lyrata HOM05D004463 ORTHO05D004724 8.7e-12 75.1 49 67.3
Carub.0002s2242 Capsella rubella HOM05D004463 ORTHO05D004724 8.7e-12 75.1 49 67.3
Zm00001eb022680 Zea mays HOM05D004463 ORTHO05D004724 1.9e-11 73.9 259 63.3
HPP92_007058 Vanilla planifolia HOM05D004463 ORTHO05D004724 4.3e-11 72.8 216 38.4
AUR62014431 Chenopodium quinoa HOM05D004463 ORTHO05D004724 7.4e-11 72.0 44 70.5
TAR369G0673 Trochodendron aralioides HOM05D004463 ORTHO05D004724 7.4e-11 72.0 51 68.6
TWI36G1578 Tripterygium wilfordii HOM05D004463 ORTHO05D004724 1.6e-10 70.9 51 62.7
SGA_v2.0_scaffold326G48748 Striga asiatica HOM05D004463 ORTHO05D004724 2.1e-10 70.5 51 62.7
AT1G75560 Arabidopsis thaliana HOM05D004463 ORTHO05D004724 3.6e-10 69.7 51 64.7
Thhalv10019006m.g Eutrema salsugineum HOM05D004463 ORTHO05D004724 3.6e-10 69.7 47 70.2
Sp5g30690 Schrenkiella parvula HOM05D004463 ORTHO05D004724 3.6e-10 69.7 47 70.2
PSO339G5998 Papaver somniferum HOM05D004463 ORTHO05D004724 2.4e-09 67.0 50 58.0
PSO648G0094 Papaver somniferum HOM05D004463 ORTHO05D004724 2.4e-09 67.0 50 58.0
Peaxi162Scf00684g00132 Petunia axillaris HOM05D004463 ORTHO05D004724 5.3e-09 65.9 59 71.2
AUR62010398 Chenopodium quinoa HOM05D004463 ORTHO05D004724 1.5e-08 64.3 109 91.7
TAR636G2492 Trochodendron aralioides HOM05D004463 ORTHO05D004724 1.5e-08 64.3 51 62.7
Cfa005098 Carpinus fangiana HOM05D065658 ORTHO05D004724 4.5e-08 62.8 45 60.0
AUR62034566 Chenopodium quinoa HOM05D004463 ORTHO05D004724 5.8e-08 62.4 58 51.7
AUR62016820 Chenopodium quinoa HOM05D004463 ORTHO05D004724 9.9e-08 61.6 106 92.5
SEGI_31170 Sequoiadendron giganteum HOM05D004463 ORTHO05D004724 9.9e-08 61.6 52 61.5
COL.COLO4_14964 Corchorus olitorius HOM05D004463 ORTHO05D004724 1.7e-07 60.8 51 58.8
FAN10G2262 Fragaria x ananassa HOM05D004463 ORTHO05D004724 1.7e-07 60.8 195 72.8
Lsat_1_v5_gn_8_16561 Lactuca sativa HOM05D004463 ORTHO05D004724 2.2e-07 60.5 48 62.5
PSO339G4128 Papaver somniferum HOM05D004463 ORTHO05D004724 2.2e-07 60.5 48 60.4
CSS0035906 Camellia sinensis var. sinensis HOM05D004463 ORTHO05D004724 3.8e-07 59.7 51 58.8
Nn6g32238 Nelumbo nucifera HOM05D004463 ORTHO05D004724 4.9e-07 59.3 34 79.4
GSVIVG01011366001 Vitis vinifera HOM05D002216 ORTHO05D002011 4.9e-07 59.3 51 56.9
Duzib106G1221 Durio zibethinus HOM05D004463 ORTHO05D004724 1.1e-06 58.2 51 56.9
Rhsim09G0164600 Rhododendron simsii HOM05D004463 ORTHO05D004724 1.4e-06 57.8 67 49.3
ECA233G0628 Erigeron canadensis HOM05D001446 ORTHO05D001360 1.9e-06 57.4 46 54.3
Thecc.10G047100 Theobroma cacao HOM05D004463 ORTHO05D004724 1.9e-06 57.4 51 54.9
Lj8C86T7 Lonicera japonica HOM05D004463 ORTHO05D004724 3.2e-06 56.6 51 56.9
SGA_v2.0_scaffold32G13220 Striga asiatica HOM05D039287 ORTHO05D004724 3.2e-06 56.6 132 67.4
GSVIVG01016581001 Vitis vinifera HOM05D004463 ORTHO05D004724 3.2e-06 56.6 51 54.9
Dinv25993 Davidia involucrata HOM05D004463 ORTHO05D004724 4.2e-06 56.2 51 54.9
QL08p059074 Quercus lobata HOM05D004463 ORTHO05D004724 4.2e-06 56.2 48 58.3
Manes.10G032800 Manihot esculenta HOM05D004463 ORTHO05D004724 5.5e-06 55.8 50 52.0
ATR0998G002 Amborella trichopoda HOM05D004463 ORTHO05D004724 7.1e-06 55.5 215 71.6
Gohir.D10G224732 Gossypium hirsutum HOM05D004463 ORTHO05D004724 7.1e-06 55.5 42 59.5
Hma1.2p1_0727F.1_g209210 Hydrangea macrophylla HOM05D004463 ORTHO05D004724 9.3e-06 55.1 68 51.5
Prupe.2G231800 Prunus persica HOM05D004463 ORTHO05D004724 9.3e-06 55.1 43 58.1


User provided reference genes

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