Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.003G169300 Populus trichocarpa HOM05D005577 ORTHO05D006941 2.1e-274 948.3 467 100.0
Sabra03G0124100 Salix brachista HOM05D005577 ORTHO05D006941 2.6e-227 792.0 481 84.0
Manes.13G009300 Manihot esculenta HOM05D005577 ORTHO05D006941 7.0e-225 783.9 462 83.8
Manes.12G008900 Manihot esculenta HOM05D005577 ORTHO05D006941 9.1e-225 783.5 462 84.4
TWI36G1278 Tripterygium wilfordii HOM05D005577 ORTHO05D006941 1.4e-220 769.6 454 83.5
TWI75G1135 Tripterygium wilfordii HOM05D005577 ORTHO05D006941 1.5e-219 766.1 454 83.7
GSVIVG01029087001 Vitis vinifera HOM05D005577 ORTHO05D006941 7.5e-219 763.8 454 83.7
TAR629G1549 Trochodendron aralioides HOM05D005577 ORTHO05D006941 2.0e-216 755.7 452 83.4
Duzib248G1391 Durio zibethinus HOM05D005577 ORTHO05D006941 4.5e-216 754.6 452 83.4
Thecc.02G202700 Theobroma cacao HOM05D005577 ORTHO05D006941 5.2e-212 741.1 445 82.9
Nn3g16413 Nelumbo nucifera HOM05D005577 ORTHO05D006941 1.2e-211 740.0 452 82.5
Gohir.A03G117000 Gossypium hirsutum HOM05D005577 ORTHO05D006941 2.6e-211 738.8 438 82.9
Cfa009383 Carpinus fangiana HOM05D005577 ORTHO05D006941 1.3e-210 736.5 453 81.5
Gohir.D02G146900 Gossypium hirsutum HOM05D005577 ORTHO05D006941 1.3e-210 736.5 451 81.4
Rhsim12G0094300 Rhododendron simsii HOM05D005577 ORTHO05D006941 1.7e-210 736.1 450 81.1
Sopen04g017360 Solanum pennellii HOM05D005577 ORTHO05D006941 3.7e-210 734.9 458 79.9
Gorai.005G164500 Gossypium raimondii HOM05D005577 ORTHO05D006941 4.8e-210 734.6 451 81.2
Cc11_g17150 Coffea canephora HOM05D005577 ORTHO05D006941 2.4e-209 732.3 443 81.5
Peaxi162Scf00128g01539 Petunia axillaris HOM05D005577 ORTHO05D006941 2.4e-209 732.3 452 80.8
Sc11g0000360 Simmondsia chinensis HOM05D005577 ORTHO05D006941 2.4e-209 732.3 453 81.2
Ciclev10031511m.g Citrus clementina HOM05D005577 ORTHO05D006941 3.1e-209 731.9 450 81.1
Haze_12444 Corylus avellana HOM05D005577 ORTHO05D006941 3.1e-209 731.9 462 78.8
CSS0033060 Camellia sinensis var. sinensis HOM05D005577 ORTHO05D006941 7.0e-209 730.7 452 81.6
Glyma.05G148900 Glycine max HOM05D005577 ORTHO05D006941 1.2e-208 729.9 457 79.0
Glyma.08G105600 Glycine max HOM05D005577 ORTHO05D006941 1.2e-208 729.9 457 78.8
Ca_18016_v3 Cicer arietinum L. HOM05D005577 ORTHO05D006941 3.5e-208 728.4 458 78.6
QL03p051875 Quercus lobata HOM05D005577 ORTHO05D006941 3.5e-208 728.4 463 78.4
Nitab4.5_0008235g0010 Nicotiana tabacum HOM05D005577 ORTHO05D006941 1.0e-207 726.9 455 79.1
Medtr8g097160 Medicago truncatula HOM05D005577 ORTHO05D006941 1.7e-207 726.1 454 79.1
FAN07G0551 Fragaria x ananassa HOM05D005577 ORTHO05D006941 1.1e-206 723.4 452 79.6
FAN12G2046 Fragaria x ananassa HOM05D005577 ORTHO05D006941 1.9e-206 722.6 440 80.7
CANSAT01G0699 Cannabis sativa HOM05D005577 ORTHO05D006941 2.5e-206 722.2 452 79.2
Nitab4.5_0001010g0020 Nicotiana tabacum HOM05D005577 ORTHO05D006941 3.3e-206 721.8 449 79.7
MSTRG.487 Avicennia marina HOM05D005577 ORTHO05D006941 4.2e-206 721.5 455 77.8
Hund25478 Selenicereus undatus HOM05D005577 ORTHO05D006941 7.2e-206 720.7 452 79.6
TPR.G26572 Trifolium pratense HOM05D005577 ORTHO05D006941 2.1e-205 719.2 456 77.6
RcHm_v2.0_Chr4g0418271 Rosa chinensis HOM05D005577 ORTHO05D006941 2.8e-205 718.8 440 81.1
FAN22G0128 Fragaria x ananassa HOM05D005577 ORTHO05D006941 3.6e-205 718.4 452 79.0
CiPaw.06G104800 Carya illinoinensis HOM05D005577 ORTHO05D006941 8.0e-205 717.2 434 80.4
CsaV3_6G008170 Cucumis sativus L. HOM05D005577 ORTHO05D006941 8.0e-205 717.2 444 79.1
Migut.K00987 Erythranthe guttata HOM05D005577 ORTHO05D006941 8.0e-205 717.2 455 77.4
Eucgr.H04616 Eucalyptus grandis HOM05D005577 ORTHO05D006941 8.0e-205 717.2 435 80.0
SalBow2G2693 Salvia bowleyana HOM05D005577 ORTHO05D006941 8.0e-205 717.2 454 78.0
Lj6A829T30 Lonicera japonica HOM05D005577 ORTHO05D006941 1.0e-204 716.8 475 78.5
CSS0039862 Camellia sinensis var. sinensis HOM05D005577 ORTHO05D006941 1.8e-204 716.1 455 79.8
Phvul.L003546 Phaseolus vulgaris HOM05D005577 ORTHO05D006941 4.0e-204 714.9 457 76.6
Dinv11687 Davidia involucrata HOM05D005577 ORTHO05D006941 6.8e-204 714.1 414 84.8
Aqoxy5G03309 Aquilegia oxysepala HOM05D005577 ORTHO05D006941 8.9e-204 713.8 451 78.0
Sed0021319 Sechium edule HOM05D005577 ORTHO05D006941 2.6e-203 712.2 452 77.7
MD13G1121900 Malus domestica HOM05D005577 ORTHO05D006941 7.5e-203 710.7 452 78.3
COL.COLO4_20442 Corchorus olitorius HOM05D005577 ORTHO05D006941 9.8e-203 710.3 451 78.7
Lj4g0002319 Lotus japonicus HOM05D005577 ORTHO05D006941 2.2e-202 709.1 458 77.1
DCAR_024669 Daucus carota HOM05D005577 ORTHO05D006941 2.8e-202 708.8 483 73.9
Solyc04g045530.4 Solanum lycopersicum HOM05D005577 ORTHO05D006941 1.2e-200 703.4 433 80.8
Lalb_Chr07g0187001 Lupinus albus HOM05D005577 ORTHO05D006941 1.6e-200 703.0 443 78.6
EL10Ac6g13532 Beta vulgaris HOM05D005577 ORTHO05D006941 3.5e-200 701.8 450 77.8
arahy.Tifrunner.gnm1.ann1.V9CB21 Arachis hypogaea HOM05D005577 ORTHO05D006941 1.7e-199 699.5 435 78.4
arahy.Tifrunner.gnm1.ann1.HTD3J8 Arachis hypogaea HOM05D005577 ORTHO05D006941 2.3e-199 699.1 432 78.9
Oeu058914.1 Olea europaea HOM05D005577 ORTHO05D006941 3.9e-199 698.4 469 73.8
Thhalv10018528m.g Eutrema salsugineum HOM05D005577 ORTHO05D006941 5.6e-198 694.5 451 75.2
BcaB03g15345 Brassica carinata HOM05D005577 ORTHO05D006941 7.3e-198 694.1 452 74.6
Os07g0406800 Oryza sativa ssp. japonica HOM05D005577 ORTHO05D006941 9.5e-198 693.7 430 77.2
HPP92_020263 Vanilla planifolia HOM05D005577 ORTHO05D006941 1.6e-197 693.0 454 74.9
ATR0561G025 Amborella trichopoda HOM05D005577 ORTHO05D006941 3.6e-197 691.8 451 75.6
Sp5g22260 Schrenkiella parvula HOM05D005577 ORTHO05D006941 1.4e-196 689.9 456 73.5
Zm00001eb421110 Zea mays HOM05D005577 ORTHO05D006941 2.0e-195 686.0 451 72.9
A02p14150 Brassica napus HOM05D005577 ORTHO05D006941 2.6e-195 685.6 456 73.2
HanXRQChr12g0354651 Helianthus annuus HOM05D005577 ORTHO05D006941 3.4e-195 685.3 452 75.2
C02p22860 Brassica napus HOM05D005577 ORTHO05D006941 4.4e-195 684.9 456 73.0
Hma1.2p1_0065F.1_g035160 Hydrangea macrophylla HOM05D005577 ORTHO05D006941 4.4e-195 684.9 450 76.4
Lsat_1_v5_gn_2_63520 Lactuca sativa HOM05D005577 ORTHO05D006941 4.4e-195 684.9 450 75.8
THA.LOC104807138 Tarenaya hassleriana HOM05D005577 ORTHO05D006941 4.4e-195 684.9 450 73.8
PSO017G5787 Papaver somniferum HOM05D005577 ORTHO05D006941 2.9e-194 682.2 450 75.1
Ah.03g135990 Amaranthus hybridus HOM05D005577 ORTHO05D006941 3.7e-194 681.8 452 76.5
HanXRQChr12g0357271 Helianthus annuus HOM05D005577 ORTHO05D006941 1.1e-193 680.2 452 75.0
THA.LOC104825491 Tarenaya hassleriana HOM05D005577 ORTHO05D006941 1.1e-193 680.2 453 73.7
BraA07t30887Z Brassica rapa HOM05D005577 ORTHO05D006941 2.4e-193 679.1 470 70.9
Carub.0002s1360 Capsella rubella HOM05D005577 ORTHO05D006941 5.4e-193 677.9 452 73.0
BolC2t08435H Brassica oleracea HOM05D005577 ORTHO05D006941 7.0e-193 677.6 475 70.1
ECA233G0246 Erigeron canadensis HOM05D005577 ORTHO05D006941 9.2e-193 677.2 437 75.7
BraA02t06478Z Brassica rapa HOM05D005577 ORTHO05D006941 1.6e-192 676.4 484 69.2
CARHR059800 Cardamine hirsuta HOM05D005577 ORTHO05D006941 4.6e-192 674.9 439 75.2
A07p32630 Brassica napus HOM05D005577 ORTHO05D006941 1.0e-191 673.7 462 71.6
AL2G25840 Arabidopsis lyrata HOM05D005577 ORTHO05D006941 8.6e-191 670.6 452 73.0
Prupe.1G223400 Prunus persica HOM05D005577 ORTHO05D006941 3.3e-190 668.7 451 75.8
AT1G67320 Arabidopsis thaliana HOM05D005577 ORTHO05D006941 7.3e-190 667.5 452 72.8
SGA_v2.0_scaffold114G31915 Striga asiatica HOM05D005577 ORTHO05D006941 1.2e-189 666.8 464 73.3
CDE05G3041 Ceratophyllum demersum HOM05D005577 ORTHO05D006941 3.1e-188 662.1 438 74.0
CAN.G97.33 Capsicum annuum HOM05D005577 ORTHO05D006941 3.4e-187 658.7 461 73.5
vmacro17973 Vaccinium macrocarpon HOM05D005577 ORTHO05D006941 9.8e-187 657.1 507 69.4
MELO3C022319.2 Cucumis melo HOM05D005577 ORTHO05D006941 2.4e-185 652.5 415 77.8
Actinidia09628 Actinidia chinensis HOM05D005577 ORTHO05D006941 2.1e-184 649.4 409 79.7
ClCG06G002100 Citrullus lanatus HOM05D005577 ORTHO05D006941 2.7e-184 649.0 450 72.4
unitig_699.g19962 Utricularia gibba HOM05D005577 ORTHO05D006941 5.6e-182 641.3 487 66.3
SEGI_29210 Sequoiadendron giganteum HOM05D005577 ORTHO05D006941 1.9e-177 626.3 437 68.6
BcaC03g14832 Brassica carinata HOM05D005577 ORTHO05D006941 7.1e-177 624.4 416 73.3
QL02p017501 Quercus lobata HOM05D005577 ORTHO05D006941 1.7e-175 619.8 412 75.0
Zm00001eb407100 Zea mays HOM05D005577 ORTHO05D006941 2.5e-174 615.9 387 75.7
FvH4_4g14550 Fragaria vesca HOM05D005577 ORTHO05D006941 5.6e-174 614.8 370 82.2
Cpa.g.sc43.82 Carica papaya HOM05D005577 ORTHO05D006941 1.7e-170 603.2 450 69.3
AUR62028904 Chenopodium quinoa HOM05D005577 ORTHO05D006941 5.1e-167 591.7 467 66.8
Aa31LG2G15630 Aethionema arabicum HOM05D005577 ORTHO05D006941 1.6e-165 586.6 452 66.4
AUR62005646 Chenopodium quinoa HOM05D005577 ORTHO05D006941 6.9e-164 581.3 450 67.1
AagrBONN_evm.TU.Sc2ySwM_362.1325 Anthoceros agrestis HOM05D005577 ORTHO05D006941 3.1e-156 555.8 437 61.6
Mapoly0051s0085 Marchantia polymorpha HOM05D005577 ORTHO05D006941 2.6e-155 552.7 444 61.5
SMO340G0130 Selaginella moellendorffii HOM05D005577 ORTHO05D006941 7.9e-152 541.2 423 62.2
CBR_g45479 Chara braunii HOM05D005577 ORTHO05D006941 5.6e-150 535.0 441 58.0
Hma1.2p1_0065F.1_g035170 Hydrangea macrophylla HOM05D005577 ORTHO05D006941 2.1e-149 533.1 322 81.4
Pp3c17_16180 Physcomitrium patens HOM05D005577 ORTHO05D006941 2.9e-146 522.7 439 56.9
BcaB05g24262 Brassica carinata HOM05D005577 ORTHO05D006941 2.7e-136 489.6 457 58.9
Psat7g076760 Pisum sativum HOM05D005577 ORTHO05D006941 2.8e-133 479.6 277 81.6
TAR371G1028 Trochodendron aralioides HOM05D005577 ORTHO05D006941 2.1e-120 436.8 450 57.3
MCO02G430 Micromonas commoda HOM05D005577 ORTHO05D006941 2.8e-117 426.4 455 45.1
PRCOL_00003669 Prasinoderma coloniale HOM05D005577 ORTHO05D006941 5.9e-107 392.1 438 47.7
MD09G1083700 Malus domestica HOM05D005577 ORTHO05D006941 2.2e-101 373.6 316 63.3
QL03p057485 Quercus lobata HOM05D005577 ORTHO05D006941 2.3e-95 353.6 371 53.6
Aqoxy7G01339 Aquilegia oxysepala HOM05D005577 ORTHO05D006941 7.7e-91 338.6 182 89.6
Cre06.g293000 Chlamydomonas reinhardtii HOM05D005577 ORTHO05D006941 2.2e-85 320.5 489 38.0
Psat7g076800 Pisum sativum HOM05D005577 ORTHO05D006941 5.2e-63 246.1 189 69.3
MD16G1122200 Malus domestica HOM05D005577 ORTHO05D006941 3.5e-59 233.4 338 42.6
Atru.chr11.2352 Acer truncatum HOM05D005577 ORTHO05D006941 1.2e-56 224.9 108 95.4
RcHm_v2.0_Chr4g0417261 Rosa chinensis HOM05D005577 ORTHO05D006941 5.8e-54 216.1 383 39.9
Atru.chr11.2354 Acer truncatum HOM05D005577 ORTHO05D006941 6.4e-45 186.0 111 83.8
Atru.chr11.2353 Acer truncatum HOM05D005577 ORTHO05D006941 8.4e-45 185.7 127 77.2
RcHm_v2.0_Chr4g0417231 Rosa chinensis HOM05D005577 ORTHO05D006941 2.1e-40 171.0 137 65.7
Dinv17584 Davidia involucrata HOM05D005577 ORTHO05D006941 8.1e-40 169.1 391 34.0
SHI17983 Sapria himalayana HOM05D005577 ORTHO05D006941 2.8e-32 144.1 103 68.9
SHI17980 Sapria himalayana HOM05D005577 ORTHO05D006941 2.9e-29 134.0 84 69.0
Lsat_1_v5_gn_0_16180 Lactuca sativa HOM05D005577 ORTHO05D006941 4.3e-25 120.2 127 48.8
Potri.017G053801 Populus trichocarpa HOM05D005577 ORTHO05D006941 2.1e-24 117.9 83 69.9
MCO16G135 Micromonas commoda HOM05D005577 ORTHO05D267611 3.2e-20 104.0 192 32.3
A10p10750 Brassica napus HOM05D005577 ORTHO05D006941 4.2e-20 103.6 67 68.7
QL10p065845 Quercus lobata HOM05D000176 ORTHO05D000106 4.2e-20 103.6 120 51.7
MD16G1122100 Malus domestica HOM05D005577 ORTHO05D006941 1.5e-17 95.1 78 60.3
Duzib268G0110 Durio zibethinus HOM05D005577 ORTHO05D006941 1.3e-16 92.0 104 53.8
RcHm_v2.0_Chr4g0417241 Rosa chinensis HOM05D005577 ORTHO05D006941 3.7e-16 90.5 67 67.2
SHI17981 Sapria himalayana HOM05D005577 ORTHO05D006941 6.3e-16 89.7 58 79.3
SHI17982 Sapria himalayana HOM05D005577 ORTHO05D006941 8.2e-16 89.4 75 60.0


User provided reference genes

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