Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.003G119300 Populus trichocarpa HOM05D004437 ORTHO05D005401 1.7e-74 282.7 161 100.0
Sabra01G0086400 Salix brachista HOM05D004437 ORTHO05D005401 1.6e-56 223.0 161 77.0
Atru.chr9.1501 Acer truncatum HOM05D004437 ORTHO05D005401 4.8e-56 221.5 125 88.0
CsaV3_3G003440 Cucumis sativus L. HOM05D004437 ORTHO05D005401 8.1e-56 220.7 125 86.4
MELO3C014010.2 Cucumis melo HOM05D004437 ORTHO05D005401 1.1e-55 220.3 125 85.6
Nn1g01279 Nelumbo nucifera HOM05D004437 ORTHO05D005401 3.1e-55 218.8 125 85.6
CiPaw.12G100900 Carya illinoinensis HOM05D004437 ORTHO05D005401 4.0e-55 218.4 125 85.6
CANSAT21G0327 Cannabis sativa HOM05D004437 ORTHO05D005401 5.3e-55 218.0 123 87.0
Prupe.5G087000 Prunus persica HOM05D004437 ORTHO05D005401 6.9e-55 217.6 125 82.4
TAR374G0190 Trochodendron aralioides HOM05D004437 ORTHO05D005401 6.9e-55 217.6 125 85.6
CDE06G2826 Ceratophyllum demersum HOM05D004437 ORTHO05D005401 1.5e-54 216.5 125 84.0
Haze_08988 Corylus avellana HOM05D004437 ORTHO05D005401 5.8e-54 214.5 138 79.7
Cfa012070 Carpinus fangiana HOM05D004437 ORTHO05D005401 7.6e-54 214.2 139 79.1
Sc22g0000410 Simmondsia chinensis HOM05D004437 ORTHO05D005401 1.3e-53 213.4 125 83.2
Sed0010224 Sechium edule HOM05D004437 ORTHO05D005401 1.7e-53 213.0 125 82.4
TAR629G1686 Trochodendron aralioides HOM05D004437 ORTHO05D005401 1.7e-53 213.0 125 82.4
ATR0661G478 Amborella trichopoda HOM05D004437 ORTHO05D005401 2.9e-53 212.2 125 83.2
Eucgr.E01334 Eucalyptus grandis HOM05D004437 ORTHO05D005401 2.9e-53 212.2 125 83.2
MELO3C006160.2 Cucumis melo HOM05D004437 ORTHO05D005401 3.8e-53 211.8 124 85.5
Aqoxy5G03951 Aquilegia oxysepala HOM05D004437 ORTHO05D005401 6.4e-53 211.1 124 82.3
CsaV3_3G009410 Cucumis sativus L. HOM05D004437 ORTHO05D005401 1.4e-52 209.9 124 84.7
PGR042G1009 Punica granatum HOM05D004437 ORTHO05D005401 1.4e-52 209.9 125 82.4
RcHm_v2.0_Chr7g0199901 Rosa chinensis HOM05D004437 ORTHO05D005401 1.4e-52 209.9 126 81.0
Duzib138G0705 Durio zibethinus HOM05D004437 ORTHO05D005401 2.4e-52 209.1 125 82.4
Actinidia09575 Actinidia chinensis HOM05D004437 ORTHO05D005401 5.4e-52 208.0 126 83.3
MD04G1070900 Malus domestica HOM05D004437 ORTHO05D005401 5.4e-52 208.0 125 80.8
Gohir.A11G083500 Gossypium hirsutum HOM05D004437 ORTHO05D005401 7.1e-52 207.6 124 82.3
Gorai.007G093600 Gossypium raimondii HOM05D004437 ORTHO05D005401 7.1e-52 207.6 124 82.3
Sabra03G0083300 Salix brachista HOM05D004437 ORTHO05D005401 7.1e-52 207.6 103 98.1
FAN04G1903 Fragaria x ananassa HOM05D004437 ORTHO05D005401 9.3e-52 207.2 167 68.9
Thecc.01G371500 Theobroma cacao HOM05D004437 ORTHO05D005401 9.3e-52 207.2 125 81.6
Dinv43738 Davidia involucrata HOM05D004437 ORTHO05D005401 1.6e-51 206.5 126 82.5
Gohir.D11G087600 Gossypium hirsutum HOM05D004437 ORTHO05D005401 1.6e-51 206.5 124 81.5
GSVIVG01027575001 Vitis vinifera HOM05D004437 ORTHO05D005401 1.6e-51 206.5 125 83.2
Dinv32406 Davidia involucrata HOM05D004437 ORTHO05D005401 2.1e-51 206.1 126 82.5
Glyma.03G019600 Glycine max HOM05D004437 ORTHO05D005401 2.1e-51 206.1 124 83.1
TWI23G1180 Tripterygium wilfordii HOM05D004437 ORTHO05D005401 2.1e-51 206.1 125 81.6
COL.COLO4_23799 Corchorus olitorius HOM05D004437 ORTHO05D005401 4.6e-51 204.9 125 80.8
Duzib133G0135 Durio zibethinus HOM05D004437 ORTHO05D005401 4.6e-51 204.9 125 81.6
VMungo0331G2039 Vigna mungo HOM05D004437 ORTHO05D005401 6.0e-51 204.5 124 82.3
MSTRG.25195 Avicennia marina HOM05D004437 ORTHO05D005401 7.9e-51 204.1 125 81.6
FAN08G0331 Fragaria x ananassa HOM05D004437 ORTHO05D005401 7.9e-51 204.1 126 79.4
PSO478G3285 Papaver somniferum HOM05D004437 ORTHO05D005401 7.9e-51 204.1 123 81.3
Phvul.010G087700 Phaseolus vulgaris HOM05D004437 ORTHO05D005401 7.9e-51 204.1 124 82.3
MD02G1197700 Malus domestica HOM05D004437 ORTHO05D005401 1.0e-50 203.8 124 82.3
FvH4_5g01190 Fragaria vesca HOM05D004437 ORTHO05D005401 1.3e-50 203.4 126 78.6
Manes.05G042100 Manihot esculenta HOM05D004437 ORTHO05D005401 1.3e-50 203.4 123 81.3
PSO782G1895 Papaver somniferum HOM05D004437 ORTHO05D005401 1.3e-50 203.4 123 81.3
QL08p051220 Quercus lobata HOM05D004437 ORTHO05D005401 1.3e-50 203.4 123 80.5
RcHm_v2.0_Chr1g0351651 Rosa chinensis HOM05D004437 ORTHO05D005401 1.8e-50 203.0 124 82.3
Atru.chr5.365 Acer truncatum HOM05D004437 ORTHO05D005401 2.3e-50 202.6 125 80.0
Ciclev10022649m.g Citrus clementina HOM05D004437 ORTHO05D005401 2.3e-50 202.6 125 81.6
Hma1.2p1_2548F.1_g324200 Hydrangea macrophylla HOM05D004437 ORTHO05D005401 2.3e-50 202.6 126 81.0
Os02g0122000 Oryza sativa ssp. japonica HOM05D004437 ORTHO05D005401 2.3e-50 202.6 122 80.3
Psat4g150640 Pisum sativum HOM05D004437 ORTHO05D005401 2.3e-50 202.6 124 80.6
Manes.01G263900 Manihot esculenta HOM05D004437 ORTHO05D005401 3.0e-50 202.2 123 80.5
Medtr8g033340 Medicago truncatula HOM05D004437 ORTHO05D005401 3.0e-50 202.2 124 80.6
Ca_23785_v3 Cicer arietinum L. HOM05D004437 ORTHO05D005401 3.9e-50 201.8 124 80.6
TWI14G0837 Tripterygium wilfordii HOM05D004437 ORTHO05D005401 3.9e-50 201.8 127 81.1
Lalb_Chr10g0097651 Lupinus albus HOM05D004437 ORTHO05D005401 5.1e-50 201.4 125 80.8
Prupe.2G150900 Prunus persica HOM05D004437 ORTHO05D005401 5.1e-50 201.4 124 80.6
THA.LOC104802003 Tarenaya hassleriana HOM05D004437 ORTHO05D005401 1.5e-49 199.9 123 78.0
CiPaw.01G258300 Carya illinoinensis HOM05D004437 ORTHO05D005401 1.9e-49 199.5 124 79.0
FAN13G0465 Fragaria x ananassa HOM05D004437 ORTHO05D005401 1.9e-49 199.5 132 76.5
Hma1.2p1_0033F.1_g020790 Hydrangea macrophylla HOM05D004437 ORTHO05D005401 3.3e-49 198.7 126 77.8
Migut.C00761 Erythranthe guttata HOM05D004437 ORTHO05D005401 4.3e-49 198.4 125 79.2
FvH4_7g12660 Fragaria vesca HOM05D004437 ORTHO05D005401 7.4e-49 197.6 123 78.0
FAN10G0783 Fragaria x ananassa HOM05D004437 ORTHO05D005401 7.4e-49 197.6 123 78.0
FAN10G4017 Fragaria x ananassa HOM05D004437 ORTHO05D005401 7.4e-49 197.6 123 78.0
Lj3g0004540 Lotus japonicus HOM05D004437 ORTHO05D005401 7.4e-49 197.6 123 79.7
Pp3c14_24540 Physcomitrium patens HOM05D004437 ORTHO05D005401 1.3e-48 196.8 122 77.9
Carub.0004s2829 Capsella rubella HOM05D004437 ORTHO05D005401 1.6e-48 196.4 121 76.0
Peaxi162Scf00988g00110 Petunia axillaris HOM05D004437 ORTHO05D005401 2.1e-48 196.1 124 78.2
Hund14703 Selenicereus undatus HOM05D004437 ORTHO05D005401 2.8e-48 195.7 124 80.6
Zm00001eb208420 Zea mays HOM05D004437 ORTHO05D005401 2.8e-48 195.7 124 78.2
MSTRG.1255 Avicennia marina HOM05D004437 ORTHO05D005401 3.7e-48 195.3 125 78.4
Nitab4.5_0007346g0070 Nicotiana tabacum HOM05D004437 ORTHO05D005401 3.7e-48 195.3 125 77.6
CARHR140860 Cardamine hirsuta HOM05D004437 ORTHO05D005401 4.8e-48 194.9 121 75.2
Potri.002G151500 Populus trichocarpa HOM05D004437 ORTHO05D005401 4.8e-48 194.9 120 81.7
ClCG05G001990 Citrullus lanatus HOM05D004437 ORTHO05D005401 6.2e-48 194.5 146 72.6
A05p05600 Brassica napus HOM05D004437 ORTHO05D005401 1.4e-47 193.4 123 74.0
C04p06550 Brassica napus HOM05D004437 ORTHO05D005401 1.4e-47 193.4 123 74.0
BolC4t22280H Brassica oleracea HOM05D004437 ORTHO05D005401 1.4e-47 193.4 123 74.0
BraA05t19533Z Brassica rapa HOM05D004437 ORTHO05D005401 1.4e-47 193.4 123 74.0
Sp4g27680 Schrenkiella parvula HOM05D004437 ORTHO05D005401 1.4e-47 193.4 123 74.0
Solyc05g047690.3 Solanum lycopersicum HOM05D004437 ORTHO05D005401 1.8e-47 193.0 122 79.5
Sopen05g027940 Solanum pennellii HOM05D004437 ORTHO05D005401 1.8e-47 193.0 122 79.5
PGSC0003DMG400013695 Solanum tuberosum HOM05D004437 ORTHO05D005401 1.8e-47 193.0 122 79.5
CAN.G1608.2 Capsicum annuum HOM05D004437 ORTHO05D005401 2.4e-47 192.6 122 77.9
SEGI_23012 Sequoiadendron giganteum HOM05D004437 ORTHO05D005401 2.4e-47 192.6 121 79.3
AL4G44810 Arabidopsis lyrata HOM05D004437 ORTHO05D005401 3.1e-47 192.2 121 76.0
CSS0011172 Camellia sinensis var. sinensis HOM05D004437 ORTHO05D005401 3.1e-47 192.2 118 82.2
Lsat_1_v5_gn_7_6120 Lactuca sativa HOM05D004437 ORTHO05D005401 4.0e-47 191.8 126 76.2
Cc02_g36970 Coffea canephora HOM05D004437 ORTHO05D005401 5.3e-47 191.4 125 76.8
BcaB02g09022 Brassica carinata HOM05D004437 ORTHO05D005401 6.9e-47 191.0 123 72.4
AagrBONN_evm.TU.Sc2ySwM_228.779 Anthoceros agrestis HOM05D004437 ORTHO05D005401 9.0e-47 190.7 120 75.8
arahy.Tifrunner.gnm1.ann1.9F5S9Q Arachis hypogaea HOM05D004437 ORTHO05D005401 1.2e-46 190.3 124 76.6
HanXRQChr06g0169271 Helianthus annuus HOM05D004437 ORTHO05D005401 1.2e-46 190.3 126 75.4
CSS0004475 Camellia sinensis var. sinensis HOM05D004437 ORTHO05D005401 1.5e-46 189.9 116 82.8
Hund16975 Selenicereus undatus HOM05D004437 ORTHO05D005401 1.5e-46 189.9 120 79.2
HanXRQChr04g0122121 Helianthus annuus HOM05D004437 ORTHO05D005401 2.6e-46 189.1 126 75.4
ClCG00G000160 Citrullus lanatus HOM05D004437 ORTHO05D005401 3.4e-46 188.7 125 76.8
ClCG10G003410 Citrullus lanatus HOM05D004437 ORTHO05D005401 3.4e-46 188.7 125 76.8
arahy.Tifrunner.gnm1.ann1.7T3GCC Arachis hypogaea HOM05D004437 ORTHO05D005401 9.9e-46 187.2 124 75.8
Thhalv10001671m.g Eutrema salsugineum HOM05D004437 ORTHO05D005401 9.9e-46 187.2 121 73.6
ECA236G3516 Erigeron canadensis HOM05D004437 ORTHO05D005401 1.3e-45 186.8 123 75.6
CBR_g4404 Chara braunii HOM05D004437 ORTHO05D005401 2.2e-45 186.0 117 76.1
Lsat_1_v5_gn_7_59201 Lactuca sativa HOM05D004437 ORTHO05D005401 4.9e-45 184.9 134 71.6
SalBow7G1560 Salvia bowleyana HOM05D004437 ORTHO05D005401 1.1e-44 183.7 135 71.1
vmacro13357 Vaccinium macrocarpon HOM05D004437 ORTHO05D005401 1.4e-44 183.3 181 59.1
Mapoly0086s0082 Marchantia polymorpha HOM05D004437 ORTHO05D005401 1.9e-44 183.0 120 73.3
AT2G45640 Arabidopsis thaliana HOM05D004437 ORTHO05D005401 2.4e-44 182.6 121 72.7
MBI04_g06621_MAGBIO Magnolia biondii HOM05D004437 ORTHO05D005401 2.4e-44 182.6 106 85.8
MBI04_g34692_MAGBIO Magnolia biondii HOM05D004437 ORTHO05D005401 2.4e-44 182.6 105 86.7
SMO230G0007 Selaginella moellendorffii HOM05D004437 ORTHO05D005401 3.2e-44 182.2 122 73.0
SGA_v2.0_scaffold201G41379 Striga asiatica HOM05D000186 ORTHO05D001124 3.2e-44 182.2 116 77.6
AUR62010560 Chenopodium quinoa HOM05D004437 ORTHO05D005401 9.3e-44 180.6 119 75.6
SGA_v2.0_scaffold11G05840 Striga asiatica HOM05D000186 ORTHO05D001124 1.2e-43 180.3 115 77.4
AUR62017329 Chenopodium quinoa HOM05D004437 ORTHO05D005401 3.5e-43 178.7 119 74.8
COL.COLO4_12656 Corchorus olitorius HOM05D004437 ORTHO05D005401 7.9e-43 177.6 125 74.4
unitig_578.g16077 Utricularia gibba HOM05D002183 ORTHO05D002169 1.3e-42 176.8 115 78.3
AagrBONN_evm.TU.Sc2ySwM_362.2206 Anthoceros agrestis HOM05D004437 ORTHO05D005401 2.3e-42 176.0 111 75.7
Potri.014G074000 Populus trichocarpa HOM05D004437 ORTHO05D005401 3.0e-42 175.6 122 71.3
Nitab4.5_0001127g0160 Nicotiana tabacum HOM05D004437 ORTHO05D005401 4.3e-41 171.8 124 71.8
AUR62004271 Chenopodium quinoa HOM05D004437 ORTHO05D005401 1.6e-40 169.9 120 70.8
Nitab4.5_0004622g0030 Nicotiana tabacum HOM05D004437 ORTHO05D005401 1.6e-40 169.9 120 71.7
AUR62033386 Chenopodium quinoa HOM05D004437 ORTHO05D005401 3.7e-40 168.7 151 60.3
EL10Ac1g00948 Beta vulgaris HOM05D004437 ORTHO05D005401 4.8e-40 168.3 109 75.2
MD00G1131900 Malus domestica HOM05D004437 ORTHO05D005401 6.2e-40 167.9 155 58.1
Nitab4.5_0001702g0190 Nicotiana tabacum HOM05D004437 ORTHO05D005401 1.4e-39 166.8 125 70.4
Zm00001eb230470 Zea mays HOM05D004437 ORTHO05D005401 1.8e-39 166.4 124 71.0
FAN18G0922 Fragaria x ananassa HOM05D004437 ORTHO05D005401 4.0e-39 165.2 105 77.1
SHI32178 Sapria himalayana HOM05D004437 ORTHO05D005401 9.0e-39 164.1 112 73.2
DCAR_006889 Daucus carota HOM05D004437 ORTHO05D005401 4.5e-38 161.8 124 69.4
Cpa.g.sc18.165 Carica papaya HOM05D004437 ORTHO05D005401 1.0e-37 160.6 88 85.2
Ah.12g057860 Amaranthus hybridus HOM05D004437 ORTHO05D005401 1.7e-37 159.8 123 67.5
BcaC01g05120 Brassica carinata HOM05D004437 ORTHO05D005401 4.9e-37 158.3 118 63.6
Sed0003115 Sechium edule HOM05D004437 ORTHO05D005401 4.9e-37 158.3 88 81.8
Cre09.g404400 Chlamydomonas reinhardtii HOM05D004437 ORTHO05D005401 1.1e-36 157.1 117 65.0
BcaC02g12196 Brassica carinata HOM05D004437 ORTHO05D005401 2.5e-36 156.0 102 72.5
FAN01G2781 Fragaria x ananassa HOM05D004437 ORTHO05D005401 1.2e-35 153.7 123 65.0
FAN06G0648 Fragaria x ananassa HOM05D004437 ORTHO05D005401 1.2e-35 153.7 123 65.0
FAN06G3102 Fragaria x ananassa HOM05D004437 ORTHO05D005401 1.2e-35 153.7 123 65.0
Aa31LG1G27110 Aethionema arabicum HOM05D004437 ORTHO05D005401 3.5e-35 152.1 93 79.6
HPP92_025880 Vanilla planifolia HOM05D004437 ORTHO05D005401 8.2e-32 141.0 95 73.7
TPR.G14692 Trifolium pratense HOM05D004437 ORTHO05D005401 5.3e-31 138.3 127 62.2
Lj9A574G30 Lonicera japonica HOM05D000186 ORTHO05D001124 9.3e-28 127.5 107 63.6
CDE04G2772 Ceratophyllum demersum HOM05D004437 ORTHO05D005401 1.0e-26 124.0 76 84.2
EL10Ac5g12685 Beta vulgaris HOM05D004437 ORTHO05D005401 2.2e-24 116.3 133 51.1
Haze_26096 Corylus avellana HOM05D004437 ORTHO05D005401 2.8e-24 115.9 118 47.5
Glyma.07G081500 Glycine max HOM05D004437 ORTHO05D005401 1.8e-23 113.2 58 91.4
CAN.G126.10 Capsicum annuum HOM05D004437 ORTHO05D005401 1.2e-22 110.5 64 79.7
Actinidia31448 Actinidia chinensis HOM05D004437 ORTHO05D005401 5.9e-22 108.2 97 60.8
Zm00001eb230390 Zea mays HOM05D004437 ORTHO05D004372 2.9e-21 105.9 57 84.2
Glyma.20G186451 Glycine max HOM05D004437 ORTHO05D005401 4.2e-20 102.1 58 86.2
Haze_16715 Corylus avellana HOM05D004437 ORTHO05D005401 7.2e-20 101.3 52 86.5
Oeu058600.1 Olea europaea HOM05D004437 ORTHO05D005401 2.7e-19 99.4 74 74.3
C03p30120 Brassica napus HOM05D004437 ORTHO05D005401 2.6e-17 92.8 75 60.0
BolC3t15361H Brassica oleracea HOM05D004437 ORTHO05D005401 2.2e-16 89.7 75 58.7
BraA03t11727Z Brassica rapa HOM05D004437 ORTHO05D005401 2.8e-16 89.4 75 58.7
A03p25260 Brassica napus HOM05D004437 ORTHO05D005401 4.5e-14 82.0 47 80.9
Atru.ctg1434.8 Acer truncatum HOM05D004437 ORTHO05D037942 7.2e-12 74.7 132 35.6
DCAR_008576 Daucus carota HOM05D004437 ORTHO05D005401 1.6e-11 73.6 102 45.1
Cfa022890 Carpinus fangiana HOM05D004437 ORTHO05D037942 3.3e-09 65.9 148 31.1
BcaC09g48983 Brassica carinata HOM05D004437 ORTHO05D005401 6.3e-08 61.6 39 71.8


User provided reference genes

Program Settings