Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.002G245700 Populus trichocarpa HOM05D005604 ORTHO05D006745 0.0e+00 1078.5 550 100.0
Sabra02G0187000 Salix brachista HOM05D005604 ORTHO05D006745 7.6e-247 857.1 487 91.4
Prupe.8G199200 Prunus persica HOM05D005604 ORTHO05D006745 8.2e-241 837.0 552 78.8
Dinv12653 Davidia involucrata HOM05D005604 ORTHO05D006745 2.0e-239 832.4 552 77.2
Thecc.01G220400 Theobroma cacao HOM05D005604 ORTHO05D006745 1.3e-238 829.7 553 77.6
COL.COLO4_15621 Corchorus olitorius HOM05D005604 ORTHO05D006745 2.1e-236 822.4 559 77.5
Atru.chr6.1423 Acer truncatum HOM05D005604 ORTHO05D006745 3.9e-235 818.1 566 76.1
RcHm_v2.0_Chr6g0284121 Rosa chinensis HOM05D005604 ORTHO05D006745 1.9e-234 815.8 556 77.3
QL09p051278 Quercus lobata HOM05D005604 ORTHO05D006745 9.7e-234 813.5 550 75.3
CSS0000075 Camellia sinensis var. sinensis HOM05D005604 ORTHO05D006745 2.8e-233 812.0 553 75.2
FvH4_2g18560 Fragaria vesca HOM05D005604 ORTHO05D006745 4.8e-233 811.2 556 76.6
Duzib138G1747 Durio zibethinus HOM05D005604 ORTHO05D006745 6.3e-233 810.8 554 76.2
Dinv19175 Davidia involucrata HOM05D005604 ORTHO05D006745 1.1e-232 810.1 552 76.1
MD10G1160100 Malus domestica HOM05D005604 ORTHO05D006745 1.1e-232 810.1 552 76.8
FAN15G1583 Fragaria x ananassa HOM05D005604 ORTHO05D006745 1.8e-232 809.3 556 76.3
Duzib133G0023 Durio zibethinus HOM05D005604 ORTHO05D006745 2.4e-232 808.9 553 76.3
GSVIVG01003930001 Vitis vinifera HOM05D005604 ORTHO05D006745 2.4e-232 808.9 553 77.2
FAN24G1841 Fragaria x ananassa HOM05D005604 ORTHO05D006745 5.3e-232 807.7 556 75.5
MD05G1171800 Malus domestica HOM05D005604 ORTHO05D006745 1.5e-231 806.2 552 77.0
Cpa.g.sc43.114 Carica papaya HOM05D005604 ORTHO05D006745 7.7e-231 803.9 552 74.5
CiPaw.01G050300 Carya illinoinensis HOM05D005604 ORTHO05D006745 1.0e-230 803.5 557 75.6
Gorai.001G231700 Gossypium raimondii HOM05D005604 ORTHO05D006745 2.2e-230 802.4 552 74.6
Gohir.D07G205700 Gossypium hirsutum HOM05D005604 ORTHO05D006745 8.5e-230 800.4 552 74.5
Gohir.A07G199300 Gossypium hirsutum HOM05D005604 ORTHO05D006745 1.9e-229 799.3 551 74.4
FAN27G1924 Fragaria x ananassa HOM05D005604 ORTHO05D006745 1.6e-228 796.2 557 74.1
Ciclev10019544m.g Citrus clementina HOM05D005604 ORTHO05D006745 3.6e-228 795.0 558 75.4
CANSAT01G1141 Cannabis sativa HOM05D005604 ORTHO05D006745 1.5e-226 789.6 557 74.7
CiPaw.02G023400 Carya illinoinensis HOM05D005604 ORTHO05D006745 7.4e-226 787.3 552 75.4
TWI36G0921 Tripterygium wilfordii HOM05D005604 ORTHO05D006745 2.7e-220 768.8 559 73.7
Eucgr.K02139 Eucalyptus grandis HOM05D005604 ORTHO05D006745 3.6e-220 768.5 551 72.8
TWI18G0325 Tripterygium wilfordii HOM05D005604 ORTHO05D006745 8.8e-219 763.8 558 73.5
Actinidia39432 Actinidia chinensis HOM05D005604 ORTHO05D006745 5.7e-218 761.1 556 71.8
Rhsim13G0047500 Rhododendron simsii HOM05D005604 ORTHO05D006745 1.7e-217 759.6 558 72.2
Hma1.2p1_0226F.1_g095420 Hydrangea macrophylla HOM05D005604 ORTHO05D006745 6.5e-214 747.7 553 69.6
Haze_15255 Corylus avellana HOM05D005604 ORTHO05D006745 1.9e-213 746.1 635 65.0
vmacro02782 Vaccinium macrocarpon HOM05D005604 ORTHO05D006745 6.1e-212 741.1 605 64.8
ClCG09G008600 Citrullus lanatus HOM05D005604 ORTHO05D006745 1.5e-210 736.5 555 71.7
CsaV3_7G026370 Cucumis sativus L. HOM05D005604 ORTHO05D006745 1.7e-209 733.0 555 70.5
TAR633G2144 Trochodendron aralioides HOM05D005604 ORTHO05D006745 1.1e-208 730.3 559 69.8
Glyma.18G167400 Glycine max HOM05D005604 ORTHO05D006745 3.1e-208 728.8 554 72.9
Actinidia30055 Actinidia chinensis HOM05D005604 ORTHO05D006745 5.3e-208 728.0 518 73.6
TAR362G0631 Trochodendron aralioides HOM05D005604 ORTHO05D006745 9.1e-208 727.2 561 68.3
Sed0019682 Sechium edule HOM05D005604 ORTHO05D006745 4.5e-207 724.9 554 70.6
VMungo1383G0872 Vigna mungo HOM05D005604 ORTHO05D006745 2.2e-206 722.6 552 70.5
MELO3C021083.2 Cucumis melo HOM05D005604 ORTHO05D006745 2.5e-205 719.2 555 69.9
PGSC0003DMG400027951 Solanum tuberosum HOM05D005604 ORTHO05D006745 5.2e-203 711.4 553 68.0
Psat3g148680 Pisum sativum HOM05D005604 ORTHO05D006745 1.5e-202 709.9 552 68.7
MSTRG.18511 Avicennia marina HOM05D005604 ORTHO05D006745 2.6e-202 709.1 552 66.8
Nitab4.5_0009005g0020 Nicotiana tabacum HOM05D005604 ORTHO05D006745 3.7e-201 705.3 550 66.2
Glyma.08G349100 Glycine max HOM05D005604 ORTHO05D006745 4.8e-201 704.9 558 70.3
Solyc09g059470.4 Solanum lycopersicum HOM05D005604 ORTHO05D006745 6.3e-201 704.5 554 67.3
Sopen09g022640 Solanum pennellii HOM05D005604 ORTHO05D006745 1.4e-200 703.4 554 67.0
Lj1g0022594 Lotus japonicus HOM05D005604 ORTHO05D006745 2.4e-200 702.6 537 70.6
Lj1A89T69 Lonicera japonica HOM05D005604 ORTHO05D006745 3.1e-200 702.2 612 64.1
arahy.Tifrunner.gnm1.ann1.6511ZK Arachis hypogaea HOM05D005604 ORTHO05D006745 2.7e-199 699.1 555 69.5
arahy.Tifrunner.gnm1.ann1.S4VI32 Arachis hypogaea HOM05D005604 ORTHO05D006745 3.3e-197 692.2 554 69.3
Migut.D00766 Erythranthe guttata HOM05D005604 ORTHO05D006745 4.2e-197 691.8 553 67.8
Nitab4.5_0003020g0080 Nicotiana tabacum HOM05D005604 ORTHO05D006745 1.6e-196 689.9 569 64.1
Sopen06g034740 Solanum pennellii HOM05D005604 ORTHO05D006745 1.6e-196 689.9 550 65.6
Phvul.008G130900 Phaseolus vulgaris HOM05D005604 ORTHO05D006745 2.1e-196 689.5 546 69.0
AUR62001131 Chenopodium quinoa HOM05D005604 ORTHO05D006745 4.0e-195 685.3 580 65.0
MBI07_g18990_MAGBIO Magnolia biondii HOM05D005604 ORTHO05D006745 1.5e-194 683.3 560 65.9
Medtr7g056243 Medicago truncatula HOM05D005604 ORTHO05D006745 1.5e-194 683.3 539 66.8
CAN.G874.4 Capsicum annuum HOM05D005604 ORTHO05D006745 2.6e-194 682.6 551 64.6
Solyc06g083370.3 Solanum lycopersicum HOM05D005604 ORTHO05D006745 2.6e-194 682.6 550 65.1
Lalb_Chr13g0291101 Lupinus albus HOM05D005604 ORTHO05D006745 4.4e-194 681.8 565 66.7
Manes.13G049200 Manihot esculenta HOM05D005604 ORTHO05D006745 9.8e-194 680.6 449 80.4
PGSC0003DMG400020164 Solanum tuberosum HOM05D005604 ORTHO05D006745 1.3e-193 680.2 550 64.7
DCAR_012669 Daucus carota HOM05D005604 ORTHO05D006745 4.9e-193 678.3 557 64.6
PSO063G0087 Papaver somniferum HOM05D005604 ORTHO05D006745 1.4e-192 676.8 564 64.7
PGR044G1204 Punica granatum HOM05D005604 ORTHO05D006745 3.1e-192 675.6 570 67.5
AUR62016550 Chenopodium quinoa HOM05D005604 ORTHO05D006745 1.2e-191 673.7 580 64.0
DCAR_004740 Daucus carota HOM05D005604 ORTHO05D006745 2.7e-191 672.5 552 64.3
PSO017G3308 Papaver somniferum HOM05D005604 ORTHO05D006745 3.8e-190 668.7 564 63.8
Ah.15g093490 Amaranthus hybridus HOM05D005604 ORTHO05D006745 1.9e-189 666.4 584 61.5
HanXRQChr04g0108051 Helianthus annuus HOM05D005604 ORTHO05D006745 2.1e-188 662.9 556 64.6
THA.LOC104822492 Tarenaya hassleriana HOM05D005604 ORTHO05D006745 7.5e-186 654.4 568 63.9
Cc01_g16720 Coffea canephora HOM05D005604 ORTHO05D006745 9.8e-186 654.1 553 64.4
Nitab4.5_0000045g0530 Nicotiana tabacum HOM05D005604 ORTHO05D006745 3.3e-181 639.0 691 53.7
Nitab4.5_0003317g0030 Nicotiana tabacum HOM05D005604 ORTHO05D006745 2.8e-180 636.0 692 53.2
EL10Ac7g17895 Beta vulgaris HOM05D005604 ORTHO05D006745 6.2e-180 634.8 581 59.6
CARHR081860 Cardamine hirsuta HOM05D005604 ORTHO05D006745 1.5e-178 630.2 575 63.5
Aa31LG5G17790 Aethionema arabicum HOM05D005604 ORTHO05D006745 2.0e-178 629.8 566 63.4
THA.LOC104802659 Tarenaya hassleriana HOM05D005604 ORTHO05D006745 4.4e-178 628.6 574 64.3
Thhalv10020454m.g Eutrema salsugineum HOM05D005604 ORTHO05D006745 2.9e-177 625.9 570 62.3
AT3G07210 Arabidopsis thaliana HOM05D005604 ORTHO05D006745 3.7e-177 625.5 571 63.0
Carub.0003s0673 Capsella rubella HOM05D005604 ORTHO05D006745 1.1e-176 624.0 571 62.5
Aqoxy2G03983 Aquilegia oxysepala HOM05D005604 ORTHO05D006745 9.2e-176 620.9 565 61.8
Sp3g06160 Schrenkiella parvula HOM05D005604 ORTHO05D006745 9.2e-176 620.9 571 63.0
AL3G18480 Arabidopsis lyrata HOM05D005604 ORTHO05D006745 1.6e-175 620.2 570 61.4
Peaxi162Scf01312g00047 Petunia axillaris HOM05D005604 ORTHO05D006745 2.0e-175 619.8 467 66.8
BcaC05g29746 Brassica carinata HOM05D005604 ORTHO05D006745 1.1e-173 614.0 570 61.9
ECA236G4946 Erigeron canadensis HOM05D005604 ORTHO05D006745 4.3e-173 612.1 515 64.7
Peaxi162Scf00068g02416 Petunia axillaris HOM05D005604 ORTHO05D006745 3.4e-170 602.4 637 55.1
Lsat_1_v5_gn_8_89380 Lactuca sativa HOM05D005604 ORTHO05D006745 1.5e-165 587.0 564 61.3
Lsat_1_v5_gn_9_15140 Lactuca sativa HOM05D005604 ORTHO05D006745 2.1e-164 583.2 563 59.7
BcaC05g29850 Brassica carinata HOM05D005604 ORTHO05D006745 3.2e-160 569.3 572 59.6
C05p60150 Brassica napus HOM05D005604 ORTHO05D006745 5.4e-160 568.5 572 59.6
BolC5t34666H Brassica oleracea HOM05D005604 ORTHO05D006745 5.4e-160 568.5 572 59.6
BraA05t22827Z Brassica rapa HOM05D005604 ORTHO05D006745 3.9e-158 562.4 572 59.3
unitig_0.g223 Utricularia gibba HOM05D005604 ORTHO05D006745 8.7e-158 561.2 555 59.3
A05p41000 Brassica napus HOM05D005604 ORTHO05D006745 3.3e-157 559.3 572 58.9
HanXRQChr10g0279511 Helianthus annuus HOM05D005604 ORTHO05D006745 9.6e-157 557.8 558 55.9
unitig_60.g25697 Utricularia gibba HOM05D005604 ORTHO05D006745 2.4e-155 553.1 559 56.4
ECA247G0587 Erigeron canadensis HOM05D005604 ORTHO05D006745 6.9e-155 551.6 519 59.5
Nn1g07990 Nelumbo nucifera HOM05D005604 ORTHO05D006745 2.0e-146 523.5 431 67.5
ATR0561G172 Amborella trichopoda HOM05D005604 ORTHO05D006745 3.8e-145 519.2 576 53.0
Hund05575 Selenicereus undatus HOM05D005604 ORTHO05D006745 1.1e-139 501.1 581 51.6
Zm00001eb143450 Zea mays HOM05D005604 ORTHO05D006745 1.8e-139 500.4 575 51.5
DCAR_004736 Daucus carota HOM05D005604 ORTHO05D006745 2.0e-138 496.9 414 66.9
HPP92_011784 Vanilla planifolia HOM05D005604 ORTHO05D006745 6.4e-137 491.9 568 53.0
Os01g0917200 Oryza sativa ssp. japonica HOM05D005604 ORTHO05D006745 2.2e-129 466.8 561 51.0
Sc05g0001960 Simmondsia chinensis HOM05D005604 ORTHO05D006745 3.8e-129 466.1 391 64.2
CDE05G2031 Ceratophyllum demersum HOM05D005604 ORTHO05D006745 3.3e-125 453.0 551 48.3
Zm00001eb175070 Zea mays HOM05D005604 ORTHO05D006745 8.2e-100 368.6 564 43.4
Os08g0528800 Oryza sativa ssp. japonica HOM05D005604 ORTHO05D006745 3.1e-99 366.7 564 41.8
SGA_v2.0_scaffold158G37516 Striga asiatica HOM05D005604 ORTHO05D006745 3.5e-98 363.2 386 52.3
TPR.G6488 Trifolium pratense HOM05D005604 ORTHO05D006745 9.1e-91 338.6 320 62.5
CAN.G1432.2 Capsicum annuum HOM05D005604 ORTHO05D006745 4.1e-83 313.2 497 41.2
CDE05G1628 Ceratophyllum demersum HOM05D005604 ORTHO05D006745 3.0e-78 297.0 355 47.6
DCAR_026186 Daucus carota HOM05D005604 ORTHO05D006745 8.9e-54 215.7 480 37.9
SEGI_00167 Sequoiadendron giganteum HOM05D005604 ORTHO05D006745 2.0e-53 214.5 265 46.0
ECA247G2712 Erigeron canadensis HOM05D005604 ORTHO05D006745 1.2e-37 162.2 156 61.5
Manes.12G047141 Manihot esculenta HOM05D005604 ORTHO05D006745 5.6e-32 143.3 86 79.1
TPR.G6487 Trifolium pratense HOM05D005604 ORTHO05D006745 1.0e-25 122.5 102 60.8
Gohir.A05G304001 Gossypium hirsutum HOM05D005604 ORTHO05D006745 1.8e-25 121.7 117 54.7
Oeu057862.1 Olea europaea HOM05D005604 ORTHO05D006745 2.3e-25 121.3 89 65.2
SMO117G0236 Selaginella moellendorffii HOM05D005604 ORTHO05D006745 6.5e-20 103.2 196 32.7
AagrBONN_evm.TU.Sc2ySwM_117.906 Anthoceros agrestis HOM05D005604 ORTHO05D006745 1.8e-17 95.1 238 30.7
Mapoly0029s0037 Marchantia polymorpha HOM05D005604 ORTHO05D006745 6.7e-17 93.2 240 30.8
AagrBONN_evm.TU.Sc2ySwM_368.1401 Anthoceros agrestis HOM05D005604 ORTHO05D006745 9.6e-16 89.4 222 28.4
AagrBONN_evm.TU.Sc2ySwM_362.1199 Anthoceros agrestis HOM05D005604 ORTHO05D006745 4.8e-15 87.0 192 31.8
Hma1.2p1_1324F.1_g275630 Hydrangea macrophylla HOM05D005604 ORTHO05D006745 4.8e-15 87.0 74 58.1
QL09p051399 Quercus lobata HOM05D005604 ORTHO05D006745 1.6e-10 72.0 63 66.7
QL09p051344 Quercus lobata HOM05D005604 ORTHO05D006745 1.8e-06 58.5 47 63.8


User provided reference genes

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