Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.002G213600 Populus trichocarpa HOM05D004491 ORTHO05D006742 1.3e-230 802.7 412 100.0
Sabra02G0149400 Salix brachista HOM05D004491 ORTHO05D006742 4.4e-215 751.1 412 92.5
Potri.014G135590 Populus trichocarpa HOM05D004491 ORTHO05D006742 5.6e-210 734.2 410 90.5
Sabra14G0101900 Salix brachista HOM05D004491 ORTHO05D006742 5.2e-208 727.6 410 89.8
Manes.05G069700 Manihot esculenta HOM05D004491 ORTHO05D006742 2.2e-198 695.7 410 85.4
TWI23G1267 Tripterygium wilfordii HOM05D004491 ORTHO05D006742 5.3e-192 674.5 408 82.6
CiPaw.07G098600 Carya illinoinensis HOM05D004491 ORTHO05D006742 9.9e-191 670.2 411 80.8
CANSAT25G3440 Cannabis sativa HOM05D004491 ORTHO05D006742 2.9e-190 668.7 410 81.5
Ciclev10011862m.g Citrus clementina HOM05D004491 ORTHO05D006742 2.9e-190 668.7 410 80.2
MELO3C005918.2 Cucumis melo HOM05D004491 ORTHO05D006742 1.9e-189 666.0 409 80.0
ClCG01G000050 Citrullus lanatus HOM05D004491 ORTHO05D006742 2.4e-189 665.6 409 79.7
CsaV3_5G000130 Cucumis sativus L. HOM05D004491 ORTHO05D006742 2.4e-189 665.6 409 80.2
FAN20G1381 Fragaria x ananassa HOM05D004491 ORTHO05D006742 9.3e-189 663.7 408 79.4
Atru.chr5.1296 Acer truncatum HOM05D004491 ORTHO05D006742 1.2e-188 663.3 410 79.8
Cfa006054 Carpinus fangiana HOM05D004491 ORTHO05D006742 1.6e-188 662.9 410 80.0
Cpa.g.sc9.150 Carica papaya HOM05D004491 ORTHO05D006742 1.3e-187 659.8 411 79.1
Haze_04798 Corylus avellana HOM05D004491 ORTHO05D006742 3.0e-187 658.7 410 79.5
FvH4_2g24580 Fragaria vesca HOM05D004491 ORTHO05D006742 3.0e-187 658.7 408 78.7
FAN27G1423 Fragaria x ananassa HOM05D004491 ORTHO05D006742 3.9e-187 658.3 408 78.7
TWI14G1187 Tripterygium wilfordii HOM05D004491 ORTHO05D006742 3.9e-187 658.3 410 80.2
FAN24G0196 Fragaria x ananassa HOM05D004491 ORTHO05D006742 8.7e-187 657.1 408 78.7
FAN15G2832 Fragaria x ananassa HOM05D004491 ORTHO05D006742 1.5e-186 656.4 408 78.2
RcHm_v2.0_Chr6g0292401 Rosa chinensis HOM05D004491 ORTHO05D006742 1.5e-186 656.4 410 77.8
PGSC0003DMG400024040 Solanum tuberosum HOM05D004491 ORTHO05D006742 1.9e-186 656.0 409 78.2
QL12p023667 Quercus lobata HOM05D004491 ORTHO05D006742 5.6e-186 654.4 412 78.9
Sed0005784 Sechium edule HOM05D004491 ORTHO05D006742 2.1e-185 652.5 409 79.2
CSS0018382 Camellia sinensis var. sinensis HOM05D004491 ORTHO05D006742 2.8e-185 652.1 409 78.7
Thhalv10001466m.g Eutrema salsugineum HOM05D004491 ORTHO05D006742 4.8e-185 651.4 412 78.6
Hma1.2p1_0209F.1_g089210 Hydrangea macrophylla HOM05D004491 ORTHO05D006742 4.8e-185 651.4 409 78.2
Sed0015582 Sechium edule HOM05D004491 ORTHO05D006742 8.1e-185 650.6 408 78.9
Nitab4.5_0003831g0010 Nicotiana tabacum HOM05D004491 ORTHO05D006742 1.1e-184 650.2 411 78.1
Glyma.03G207900 Glycine max HOM05D004491 ORTHO05D006742 1.4e-184 649.8 412 79.4
Actinidia24287 Actinidia chinensis HOM05D004491 ORTHO05D006742 2.4e-184 649.0 409 77.5
TAR636G1438 Trochodendron aralioides HOM05D004491 ORTHO05D006742 5.3e-184 647.9 411 77.6
VMungo1383G0326 Vigna mungo HOM05D004491 ORTHO05D006742 6.9e-184 647.5 411 78.8
Lsat_1_v5_gn_5_189841 Lactuca sativa HOM05D004491 ORTHO05D006742 1.2e-183 646.7 410 76.1
Phvul.001G201100 Phaseolus vulgaris HOM05D004491 ORTHO05D006742 1.5e-183 646.4 411 78.8
Cc01_g20110 Coffea canephora HOM05D004491 ORTHO05D006742 2.0e-183 646.0 410 79.3
Glyma.19G205200 Glycine max HOM05D004491 ORTHO05D006742 2.0e-183 646.0 412 79.4
Sopen06g035830 Solanum pennellii HOM05D004491 ORTHO05D006742 2.0e-183 646.0 409 76.8
Nitab4.5_0002093g0130 Nicotiana tabacum HOM05D004491 ORTHO05D006742 3.4e-183 645.2 411 77.6
Solyc06g084440.3 Solanum lycopersicum HOM05D004491 ORTHO05D006742 3.4e-183 645.2 409 76.8
vmacro09158 Vaccinium macrocarpon HOM05D004491 ORTHO05D006742 3.4e-183 645.2 411 77.9
Prupe.8G251000 Prunus persica HOM05D004491 ORTHO05D006742 4.5e-183 644.8 409 77.8
MSTRG.27268 Avicennia marina HOM05D004491 ORTHO05D006742 9.9e-183 643.7 409 78.0
Aqoxy5G00601 Aquilegia oxysepala HOM05D004491 ORTHO05D006742 1.3e-182 643.3 409 77.0
AT3G63000 Arabidopsis thaliana HOM05D004491 ORTHO05D006742 1.7e-182 642.9 412 76.9
Lalb_Chr25g0287571 Lupinus albus HOM05D004491 ORTHO05D006742 1.7e-182 642.9 412 77.9
Sp4g29890 Schrenkiella parvula HOM05D004491 ORTHO05D006742 2.9e-182 642.1 412 78.4
Aa31LG1G29390 Aethionema arabicum HOM05D004491 ORTHO05D006742 4.9e-182 641.3 412 77.4
AT2G47970 Arabidopsis thaliana HOM05D004491 ORTHO05D006742 6.4e-182 641.0 412 77.7
BcaB02g08082 Brassica carinata HOM05D004491 ORTHO05D006742 1.1e-181 640.2 412 76.5
Lalb_Chr20g0111001 Lupinus albus HOM05D004491 ORTHO05D006742 1.4e-181 639.8 413 78.2
MD03G1274300 Malus domestica HOM05D004491 ORTHO05D006742 1.4e-181 639.8 411 76.2
Carub.0005s2965 Capsella rubella HOM05D004491 ORTHO05D006742 2.4e-181 639.0 412 76.2
Ca_09104_v3 Cicer arietinum L. HOM05D004491 ORTHO05D006742 2.4e-181 639.0 412 79.1
Thecc.01G288700 Theobroma cacao HOM05D004491 ORTHO05D006742 2.4e-181 639.0 411 78.1
AL5G45780 Arabidopsis lyrata HOM05D004491 ORTHO05D006742 3.2e-181 638.6 412 76.9
SalBow3G0026 Salvia bowleyana HOM05D004491 ORTHO05D006742 3.2e-181 638.6 409 76.5
Aa31LG10G16820 Aethionema arabicum HOM05D004491 ORTHO05D006742 4.2e-181 638.3 413 77.5
arahy.Tifrunner.gnm1.ann1.16527J Arachis hypogaea HOM05D004491 ORTHO05D006742 5.4e-181 637.9 413 78.7
C04p30230 Brassica napus HOM05D004491 ORTHO05D006742 7.1e-181 637.5 412 75.7
BolC4t24555H Brassica oleracea HOM05D004491 ORTHO05D006742 7.1e-181 637.5 412 75.7
Peaxi162Scf01039g00225 Petunia axillaris HOM05D004491 ORTHO05D006742 7.1e-181 637.5 410 77.3
arahy.Tifrunner.gnm1.ann1.5A22SW Arachis hypogaea HOM05D004491 ORTHO05D006742 9.3e-181 637.1 413 78.5
Medtr7g107480 Medicago truncatula HOM05D004491 ORTHO05D006742 9.3e-181 637.1 412 78.4
BcaC02g10333 Brassica carinata HOM05D004491 ORTHO05D006742 1.2e-180 636.7 412 75.7
A04p00390 Brassica napus HOM05D004491 ORTHO05D006742 1.6e-180 636.3 412 75.5
Duzib211G0578 Durio zibethinus HOM05D004491 ORTHO05D006742 1.6e-180 636.3 411 77.4
SGA_v2.0_scaffold44G16642 Striga asiatica HOM05D004491 ORTHO05D006742 1.6e-180 636.3 410 76.6
THA.LOC104817536 Tarenaya hassleriana HOM05D004491 ORTHO05D006742 1.6e-180 636.3 411 77.1
DCAR_012436 Daucus carota HOM05D004491 ORTHO05D006742 2.1e-180 636.0 411 76.9
MD11G1296800 Malus domestica HOM05D004491 ORTHO05D006742 2.7e-180 635.6 411 75.9
Lj1g0004162 Lotus japonicus HOM05D004491 ORTHO05D006742 3.5e-180 635.2 412 77.4
Psat3g025480 Pisum sativum HOM05D004491 ORTHO05D006742 3.5e-180 635.2 412 78.4
BraA04t15757Z Brassica rapa HOM05D004491 ORTHO05D006742 4.6e-180 634.8 412 75.2
Gohir.A08G115800 Gossypium hirsutum HOM05D004491 ORTHO05D006742 1.0e-179 633.6 411 77.1
Gorai.008G007400 Gossypium raimondii HOM05D004491 ORTHO05D006742 1.3e-179 633.3 410 77.1
AL4G47560 Arabidopsis lyrata HOM05D004491 ORTHO05D006742 2.3e-179 632.5 411 76.4
Gorai.004G139800 Gossypium raimondii HOM05D004491 ORTHO05D006742 3.0e-179 632.1 411 77.6
Gohir.D08G136600 Gossypium hirsutum HOM05D004491 ORTHO05D006742 1.1e-178 630.2 411 77.1
Migut.F00598 Erythranthe guttata HOM05D004491 ORTHO05D006742 1.5e-178 629.8 409 75.1
Sp5g00520 Schrenkiella parvula HOM05D004491 ORTHO05D006742 1.9e-178 629.4 412 75.2
CARHR173290 Cardamine hirsuta HOM05D004491 ORTHO05D006742 4.3e-178 628.2 412 75.5
HanXRQChr11g0334841 Helianthus annuus HOM05D004491 ORTHO05D006742 4.3e-178 628.2 410 75.4
Gohir.A12G007800 Gossypium hirsutum HOM05D004491 ORTHO05D006742 5.6e-178 627.9 409 76.3
Gohir.D12G007200 Gossypium hirsutum HOM05D004491 ORTHO05D006742 1.3e-177 626.7 410 76.1
PSO170G1317 Papaver somniferum HOM05D004491 ORTHO05D006742 1.3e-177 626.7 412 75.5
SGA_v2.0_scaffold60G20898 Striga asiatica HOM05D004491 ORTHO05D006742 4.8e-177 624.8 443 71.8
ATR0706G070 Amborella trichopoda HOM05D004491 ORTHO05D006742 6.2e-177 624.4 408 74.8
Rhsim13G0018200 Rhododendron simsii HOM05D004491 ORTHO05D006742 8.1e-177 624.0 412 75.5
Eucgr.K03426 Eucalyptus grandis HOM05D004491 ORTHO05D006742 1.8e-176 622.9 411 75.4
PSO407G0423 Papaver somniferum HOM05D004491 ORTHO05D006742 1.8e-176 622.9 412 75.7
PGR044G0382 Punica granatum HOM05D004491 ORTHO05D006742 2.4e-176 622.5 412 75.5
Nn3g21241 Nelumbo nucifera HOM05D004491 ORTHO05D006742 3.1e-176 622.1 411 75.9
ECA248G1403 Erigeron canadensis HOM05D004491 ORTHO05D006742 1.0e-174 617.1 411 73.0
MSTRG.8371 Avicennia marina HOM05D004491 ORTHO05D006742 6.5e-174 614.4 409 75.1
Hund18024 Selenicereus undatus HOM05D004491 ORTHO05D006742 6.5e-174 614.4 415 74.0
Ah.02g115120 Amaranthus hybridus HOM05D004491 ORTHO05D006742 4.2e-173 611.7 418 73.2
unitig_37.g12470 Utricularia gibba HOM05D004491 ORTHO05D006742 2.7e-172 609.0 409 73.3
vmacro09175 Vaccinium macrocarpon HOM05D004491 ORTHO05D006742 2.7e-172 609.0 476 66.2
CSS0045203 Camellia sinensis var. sinensis HOM05D004491 ORTHO05D006742 6.0e-172 607.8 410 73.7
TAR365G0641 Trochodendron aralioides HOM05D004491 ORTHO05D006742 1.1e-170 603.6 411 73.7
Lj1C40T6 Lonicera japonica HOM05D004491 ORTHO05D006742 4.3e-170 601.7 505 63.8
AUR62043003 Chenopodium quinoa HOM05D004491 ORTHO05D006742 1.1e-168 597.0 416 71.9
Oeu022805.1 Olea europaea HOM05D004491 ORTHO05D006742 1.5e-167 593.2 456 66.0
CDE01G0135 Ceratophyllum demersum HOM05D004491 ORTHO05D006742 2.6e-167 592.4 409 70.7
Dinv32984 Davidia involucrata HOM05D004682 ORTHO05D006197 1.3e-166 590.1 375 77.3
CDE12G0180 Ceratophyllum demersum HOM05D004491 ORTHO05D006742 3.8e-166 588.6 409 70.4
MBI19_g09851_MAGBIO Magnolia biondii HOM05D004491 ORTHO05D006742 4.2e-165 585.1 419 71.4
TPR.G32310 Trifolium pratense HOM05D004491 ORTHO05D006742 2.1e-164 582.8 403 74.7
EL10Ac5g11643 Beta vulgaris HOM05D004491 ORTHO05D006742 6.1e-164 581.3 465 64.5
SEGI_03905 Sequoiadendron giganteum HOM05D004491 ORTHO05D006742 1.8e-163 579.7 411 69.6
SHI15482 Sapria himalayana HOM05D004491 ORTHO05D006742 3.7e-161 572.0 428 68.2
COL.COLO4_08043 Corchorus olitorius HOM05D004491 ORTHO05D006742 3.8e-158 562.0 348 80.7
HPP92_001332 Vanilla planifolia HOM05D004491 ORTHO05D006742 6.5e-158 561.2 414 68.6
Mapoly0023s0134 Marchantia polymorpha HOM05D004491 ORTHO05D006742 2.9e-150 535.8 409 65.0
Duzib133G1404 Durio zibethinus HOM05D004491 ORTHO05D006742 2.2e-142 509.6 329 76.6
AagrBONN_evm.TU.Sc2ySwM_228.2306 Anthoceros agrestis HOM05D004491 ORTHO05D006742 8.0e-140 501.1 409 58.7
Pp3c4_25410 Physcomitrium patens HOM05D004491 ORTHO05D006742 1.0e-139 500.7 410 59.0
CAN.G1209.44 Capsicum annuum HOM05D004491 ORTHO05D006742 6.7e-139 498.0 303 80.2
Sc05g0004670 Simmondsia chinensis HOM05D004491 ORTHO05D006742 3.3e-138 495.7 332 73.5
SMO011G0024 Selaginella moellendorffii HOM05D004491 ORTHO05D006742 2.2e-134 483.0 409 60.1
CSS0029376 Camellia sinensis var. sinensis HOM05D004491 ORTHO05D006742 1.0e-131 474.2 347 69.2
AUR62034024 Chenopodium quinoa HOM05D004491 ORTHO05D006742 3.0e-131 472.6 334 71.6
Os01g0377700 Oryza sativa ssp. japonica HOM05D004491 ORTHO05D006742 1.3e-126 457.2 417 58.5
Zm00001eb366640 Zea mays HOM05D004491 ORTHO05D006742 1.5e-122 443.7 418 56.5
Zm00001eb146560 Zea mays HOM05D004491 ORTHO05D006742 8.3e-121 438.0 418 56.2
THA.LOC104820469 Tarenaya hassleriana HOM05D004491 ORTHO05D006742 1.5e-114 417.2 233 86.7
PSO384G1012 Papaver somniferum HOM05D004491 ORTHO05D006742 1.9e-101 373.6 240 75.0
PRCOL_00001630 Prasinoderma coloniale HOM05D004491 ORTHO05D006742 2.4e-88 330.1 431 44.3
THA.LOC104799698 Tarenaya hassleriana HOM05D004491 ORTHO05D006742 1.4e-80 304.3 179 83.8
MCO03G089 Micromonas commoda HOM05D004491 ORTHO05D006742 3.6e-76 289.7 390 43.6
Duzib147G1201 Durio zibethinus HOM05D004491 ORTHO05D006742 2.2e-73 280.4 246 62.2
Cre06.g293051 Chlamydomonas reinhardtii HOM05D000780 ORTHO05D001132 1.4e-64 251.1 329 43.5
Aa31sc35G70 Aethionema arabicum HOM05D004491 ORTHO05D006742 1.5e-58 231.1 181 68.0
GSVIVG01011019001 Vitis vinifera HOM05D004491 ORTHO05D006742 3.6e-47 193.4 112 83.9
Actinidia00704 Actinidia chinensis HOM05D004491 ORTHO05D019493 4.5e-42 176.4 252 45.2
BcaB02g07304 Brassica carinata HOM05D004491 ORTHO05D091651 3.9e-38 163.3 219 44.3
Zm00001eb098320 Zea mays HOM05D004491 ORTHO05D006742 4.1e-35 153.3 152 52.6
Sopen08g018880 Solanum pennellii HOM05D004491 ORTHO05D006742 1.4e-30 138.3 79 79.7
AUR62034023 Chenopodium quinoa HOM05D004491 ORTHO05D019493 5.3e-27 126.3 84 70.2
SEGI_06416 Sequoiadendron giganteum HOM05D004491 ORTHO05D019493 7.7e-26 122.5 82 68.3
BcaC08g45254 Brassica carinata HOM05D004491 ORTHO05D032214 1.5e-24 118.2 74 73.0
BolC6t38019H Brassica oleracea HOM05D004491 ORTHO05D032214 1.5e-24 118.2 74 73.0
Gohir.A11G248600 Gossypium hirsutum HOM05D004491 ORTHO05D019493 1.6e-23 114.8 88 64.8
C06p28510 Brassica napus HOM05D004491 ORTHO05D032214 2.7e-23 114.0 74 70.3
C08p37710 Brassica napus HOM05D004491 ORTHO05D031847 8.0e-23 112.5 88 64.8
BolC8t51354H Brassica oleracea HOM05D004491 ORTHO05D031847 8.0e-23 112.5 88 64.8
Actinidia28542 Actinidia chinensis HOM05D004491 ORTHO05D057841 5.2e-22 109.8 183 42.6
BcaC07g40782 Brassica carinata HOM05D004491 ORTHO05D031847 6.7e-22 109.4 88 64.8
Gohir.A04G054626 Gossypium hirsutum HOM05D004491 ORTHO05D019493 1.2e-21 108.6 83 66.3
SHI00898 Sapria himalayana HOM05D004491 ORTHO05D019493 3.3e-21 107.1 73 71.2
BcaC07g42722 Brassica carinata HOM05D004491 ORTHO05D095981 2.0e-18 97.8 66 66.7
HPP92_013688 Vanilla planifolia HOM05D004491 ORTHO05D006742 3.5e-18 97.1 81 60.5
BcaC07g42719 Brassica carinata HOM05D004491 ORTHO05D094938 1.6e-15 88.2 65 60.0
SHI19086 Sapria himalayana HOM05D004491 ORTHO05D019493 1.6e-15 88.2 60 70.0
BolC6t38020H Brassica oleracea HOM05D004491 ORTHO05D040597 2.4e-11 74.3 113 42.5
C06p28520 Brassica napus HOM05D004491 ORTHO05D040597 3.1e-11 73.9 113 41.6
CAN.G1682.2 Capsicum annuum HOM05D011687 ORTHO05D014163 3.8e-09 67.0 82 48.8
A09p54850 Brassica napus HOM05D004491 ORTHO05D102086 1.8e-06 58.2 125 36.8


User provided reference genes

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