Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.002G204900 Populus trichocarpa HOM05D004753 ORTHO05D005920 7.4e-181 637.1 328 100.0
Sabra02G0154600 Salix brachista HOM05D004753 ORTHO05D005920 3.1e-163 578.6 311 95.2
Sabra14G0096300 Salix brachista HOM05D004753 ORTHO05D005920 7.0e-163 577.4 329 90.3
Potri.014G129700 Populus trichocarpa HOM05D004753 ORTHO05D005920 2.0e-162 575.9 333 89.8
CiPaw.14G100000 Carya illinoinensis HOM05D004753 ORTHO05D005920 6.5e-153 544.3 319 85.6
ClCG10G010920 Citrullus lanatus HOM05D004753 ORTHO05D005920 1.6e-151 539.7 308 86.4
QL09p032163 Quercus lobata HOM05D004753 ORTHO05D005920 4.7e-151 538.1 319 83.4
PGR044G2668 Punica granatum HOM05D004753 ORTHO05D005920 6.1e-151 537.7 323 82.0
QL12p028506 Quercus lobata HOM05D004753 ORTHO05D005920 6.1e-151 537.7 318 84.6
Manes.01G218800 Manihot esculenta HOM05D004753 ORTHO05D005920 1.0e-150 537.0 315 85.1
Haze_24929 Corylus avellana HOM05D004753 ORTHO05D005920 8.8e-150 533.9 327 82.9
Cc09_g07750 Coffea canephora HOM05D004753 ORTHO05D005920 2.0e-149 532.7 311 85.9
Eucgr.K03479 Eucalyptus grandis HOM05D004753 ORTHO05D005920 2.6e-149 532.3 319 83.7
CSS0011058 Camellia sinensis var. sinensis HOM05D004753 ORTHO05D005920 3.4e-149 531.9 303 85.5
MELO3C017956.2 Cucumis melo HOM05D004753 ORTHO05D005920 3.4e-149 531.9 325 81.2
GSVIVG01028012001 Vitis vinifera HOM05D004753 ORTHO05D005920 3.4e-149 531.9 332 81.3
Haze_04935 Corylus avellana HOM05D004753 ORTHO05D005920 4.4e-149 531.6 319 83.7
THA.LOC104818291 Tarenaya hassleriana HOM05D004753 ORTHO05D005920 5.7e-149 531.2 313 84.0
CANSAT54G1658 Cannabis sativa HOM05D004753 ORTHO05D005920 9.8e-149 530.4 303 86.8
Ciclev10023300m.g Citrus clementina HOM05D004753 ORTHO05D005920 1.7e-148 529.6 304 85.9
MD03G1288000 Malus domestica HOM05D004753 ORTHO05D005920 1.7e-148 529.6 317 83.9
MD11G1310300 Malus domestica HOM05D004753 ORTHO05D005920 6.3e-148 527.7 316 83.5
Duzib138G1754 Durio zibethinus HOM05D004753 ORTHO05D005920 8.3e-148 527.3 327 81.0
CsaV3_4G000800 Cucumis sativus L. HOM05D004753 ORTHO05D005920 1.1e-147 526.9 319 81.5
Nn3g21484 Nelumbo nucifera HOM05D004753 ORTHO05D005920 1.4e-147 526.6 319 82.4
Oeu046682.2 Olea europaea HOM05D004753 ORTHO05D005920 1.8e-147 526.2 319 82.8
TAR636G3371 Trochodendron aralioides HOM05D004753 ORTHO05D005920 3.1e-147 525.4 325 80.6
Sed0000474 Sechium edule HOM05D004753 ORTHO05D005920 7.0e-147 524.2 303 86.5
TWI59G0801 Tripterygium wilfordii HOM05D004753 ORTHO05D005920 9.1e-147 523.9 318 81.4
Cpa.g.sc16.169 Carica papaya HOM05D004753 ORTHO05D005920 1.2e-146 523.5 318 82.7
Thecc.01G300100 Theobroma cacao HOM05D004753 ORTHO05D005920 2.0e-146 522.7 323 81.1
Duzib133G0229 Durio zibethinus HOM05D004753 ORTHO05D005920 4.5e-146 521.5 313 83.1
Oeu011458.1 Olea europaea HOM05D004753 ORTHO05D005920 5.9e-146 521.2 319 83.1
vmacro15009 Vaccinium macrocarpon HOM05D004753 ORTHO05D005920 1.3e-145 520.0 310 84.2
MSTRG.18152 Avicennia marina HOM05D004753 ORTHO05D005920 2.2e-145 519.2 321 81.6
Lsat_1_v5_gn_4_87281 Lactuca sativa HOM05D004753 ORTHO05D005920 2.2e-145 519.2 312 82.4
Gohir.D08G138800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 4.2e-144 515.0 317 81.4
Gorai.004G142400 Gossypium raimondii HOM05D004753 ORTHO05D005920 9.4e-144 513.8 317 81.4
SGA_v2.0_scaffold2G01394 Striga asiatica HOM05D004753 ORTHO05D005920 1.2e-143 513.5 313 83.1
Lj2A1194G52 Lonicera japonica HOM05D004753 ORTHO05D005920 1.6e-143 513.1 302 85.4
Atru.chr5.901 Acer truncatum HOM05D004753 ORTHO05D005920 4.7e-143 511.5 326 80.4
Peaxi162Scf01084g00120 Petunia axillaris HOM05D004753 ORTHO05D005920 8.0e-143 510.8 308 82.8
Gohir.A08G117800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 1.4e-142 510.0 311 82.6
COL.COLO4_23348 Corchorus olitorius HOM05D004753 ORTHO05D005920 3.0e-142 508.8 327 78.0
Sp2g24970 Schrenkiella parvula HOM05D004753 ORTHO05D005920 5.2e-142 508.1 315 80.3
Thhalv10004503m.g Eutrema salsugineum HOM05D004753 ORTHO05D005920 6.8e-142 507.7 320 79.4
ECA238G0492 Erigeron canadensis HOM05D004753 ORTHO05D005920 3.4e-141 505.4 324 77.8
SalBow3G1002 Salvia bowleyana HOM05D004753 ORTHO05D005920 4.4e-141 505.0 325 80.0
Hund05425 Selenicereus undatus HOM05D004753 ORTHO05D005920 4.4e-141 505.0 318 79.9
MBI18_g06877_MAGBIO Magnolia biondii HOM05D004753 ORTHO05D005920 7.5e-141 504.2 312 79.8
Nitab4.5_0002687g0080 Nicotiana tabacum HOM05D004753 ORTHO05D005920 9.8e-141 503.8 317 80.8
Rhsim01G0243400 Rhododendron simsii HOM05D004753 ORTHO05D005920 3.7e-140 501.9 369 72.6
Aqoxy2G02947 Aquilegia oxysepala HOM05D004753 ORTHO05D005920 4.9e-140 501.5 325 77.5
SGA_v2.0_scaffold1G00368 Striga asiatica HOM05D004753 ORTHO05D005920 8.3e-140 500.7 354 75.4
Aa31LG11G1720 Aethionema arabicum HOM05D004753 ORTHO05D005920 4.1e-139 498.4 330 77.0
DCAR_012396 Daucus carota HOM05D004753 ORTHO05D005920 5.4e-139 498.0 318 79.9
AL8G38530 Arabidopsis lyrata HOM05D004753 ORTHO05D005920 9.2e-139 497.3 312 78.5
CARHR275530 Cardamine hirsuta HOM05D004753 ORTHO05D005920 1.6e-138 496.5 347 73.5
HanXRQChr08g0207921 Helianthus annuus HOM05D004753 ORTHO05D005920 1.6e-138 496.5 299 82.3
Nitab4.5_0008999g0010 Nicotiana tabacum HOM05D004753 ORTHO05D005920 2.0e-138 496.1 297 84.2
Sc17g0002740 Simmondsia chinensis HOM05D004753 ORTHO05D005920 2.0e-138 496.1 318 77.7
Carub.0008s2246 Capsella rubella HOM05D004753 ORTHO05D005920 5.9e-138 494.6 297 81.8
BcaB02g09600 Brassica carinata HOM05D004753 ORTHO05D005920 1.7e-137 493.0 308 79.5
BcaC04g23436 Brassica carinata HOM05D004753 ORTHO05D005920 2.3e-137 492.7 323 77.7
C09p08350 Brassica napus HOM05D004753 ORTHO05D005920 2.3e-137 492.7 323 77.7
BolC9t53745H Brassica oleracea HOM05D004753 ORTHO05D005920 2.3e-137 492.7 323 77.7
A06p28420 Brassica napus HOM05D004753 ORTHO05D005920 3.8e-137 491.9 317 76.7
BraA06t25786Z Brassica rapa HOM05D004753 ORTHO05D005920 3.8e-137 491.9 317 76.7
AT5G61770 Arabidopsis thaliana HOM05D004753 ORTHO05D005920 5.0e-137 491.5 306 79.1
BcaC01g02428 Brassica carinata HOM05D004753 ORTHO05D005920 6.6e-137 491.1 320 76.9
C03p65390 Brassica napus HOM05D004753 ORTHO05D005920 6.6e-137 491.1 320 76.9
BolC3t18792H Brassica oleracea HOM05D004753 ORTHO05D005920 6.6e-137 491.1 320 76.9
PGSC0003DMG401027528 Solanum tuberosum HOM05D004753 ORTHO05D005920 1.1e-136 490.3 319 78.1
BraA09t36398Z Brassica rapa HOM05D004753 ORTHO05D005920 1.9e-136 489.6 322 76.7
ATR0584G246 Amborella trichopoda HOM05D004753 ORTHO05D005920 5.6e-136 488.0 305 79.3
Actinidia15830 Actinidia chinensis HOM05D004753 ORTHO05D005920 7.3e-136 487.6 309 80.6
CAN.G134.43 Capsicum annuum HOM05D004753 ORTHO05D005920 1.0e-134 483.8 311 78.5
A09p07440 Brassica napus HOM05D004753 ORTHO05D005920 1.8e-134 483.0 324 75.6
arahy.Tifrunner.gnm1.ann1.89EUFG Arachis hypogaea HOM05D004753 ORTHO05D005920 2.0e-133 479.6 320 76.6
Solyc01g096800.3 Solanum lycopersicum HOM05D004753 ORTHO05D005920 2.0e-133 479.6 318 75.8
Phvul.011G029700 Phaseolus vulgaris HOM05D004753 ORTHO05D005920 2.6e-133 479.2 303 78.5
BcaNung01420 Brassica carinata HOM05D004753 ORTHO05D005920 4.4e-133 478.4 326 75.5
AUR62008626 Chenopodium quinoa HOM05D004753 ORTHO05D005920 5.7e-133 478.0 301 78.1
arahy.Tifrunner.gnm1.ann1.B7L3V1 Arachis hypogaea HOM05D004753 ORTHO05D005920 9.8e-133 477.2 320 76.2
Glyma.12G026700 Glycine max HOM05D004753 ORTHO05D005920 9.8e-133 477.2 327 75.2
Lj3g0027269 Lotus japonicus HOM05D004753 ORTHO05D005920 9.8e-133 477.2 317 76.0
Sopen01g040500 Solanum pennellii HOM05D004753 ORTHO05D005920 9.8e-133 477.2 318 75.5
VMungo1127G1640 Vigna mungo HOM05D004753 ORTHO05D005920 2.9e-132 475.7 328 74.1
HPP92_002997 Vanilla planifolia HOM05D004753 ORTHO05D005920 1.1e-131 473.8 311 76.2
Ca_19020_v3 Cicer arietinum L. HOM05D004753 ORTHO05D005920 2.4e-131 472.6 319 74.3
Glyma.11G100700 Glycine max HOM05D004753 ORTHO05D005920 3.2e-131 472.2 320 75.0
RcHm_v2.0_Chr6g0293981 Rosa chinensis HOM05D004753 ORTHO05D005920 1.6e-130 469.9 328 72.9
FvH4_2g25700 Fragaria vesca HOM05D004753 ORTHO05D005920 2.7e-130 469.2 326 73.6
PSO832G3876 Papaver somniferum HOM05D004753 ORTHO05D005920 2.7e-130 469.2 319 75.9
Lalb_Chr01g0001441 Lupinus albus HOM05D004753 ORTHO05D005920 3.5e-130 468.8 320 75.3
FAN24G0086 Fragaria x ananassa HOM05D004753 ORTHO05D005920 7.8e-130 467.6 326 73.3
TPR.G32348 Trifolium pratense HOM05D004753 ORTHO05D005920 1.7e-129 466.5 305 76.7
FAN15G2487 Fragaria x ananassa HOM05D004753 ORTHO05D005920 5.0e-129 464.9 331 72.5
PSO017G3074 Papaver somniferum HOM05D004753 ORTHO05D005920 5.6e-128 461.5 316 74.1
FAN27G0535 Fragaria x ananassa HOM05D004753 ORTHO05D005920 7.3e-128 461.1 331 71.9
PSO210G3006 Papaver somniferum HOM05D004753 ORTHO05D005920 7.3e-128 461.1 317 74.8
HanXRQChr12g0368811 Helianthus annuus HOM05D004753 ORTHO05D005920 1.6e-127 459.9 301 76.4
FAN20G2170 Fragaria x ananassa HOM05D004753 ORTHO05D005920 3.6e-127 458.8 314 74.2
PSO170G0569 Papaver somniferum HOM05D004753 ORTHO05D005920 1.8e-126 456.4 326 71.8
Dinv37873 Davidia involucrata HOM05D004753 ORTHO05D005920 3.1e-126 455.7 261 85.8
AUR62033145 Chenopodium quinoa HOM05D004753 ORTHO05D005920 9.5e-120 434.1 301 73.4
unitig_26.g10170 Utricularia gibba HOM05D004753 ORTHO05D005920 1.1e-118 430.6 276 79.0
Ah.08g213470 Amaranthus hybridus HOM05D004753 ORTHO05D005920 3.4e-117 425.6 326 70.6
Ah.15g093220 Amaranthus hybridus HOM05D004753 ORTHO05D005920 2.7e-114 416.0 320 69.4
TAR365G0243 Trochodendron aralioides HOM05D004753 ORTHO05D005920 1.5e-109 400.2 231 85.3
Prupe.8G261200 Prunus persica HOM05D004753 ORTHO05D005920 1.3e-108 397.1 231 84.4
Os03g0343700 Oryza sativa ssp. japonica HOM05D004753 ORTHO05D005920 4.6e-106 388.7 315 61.9
Pp3c2_30030 Physcomitrium patens HOM05D004753 ORTHO05D005920 3.9e-105 385.6 298 62.4
SMO331G0088 Selaginella moellendorffii HOM05D004753 ORTHO05D005920 6.6e-105 384.8 284 65.1
CDE09G1083 Ceratophyllum demersum HOM05D004753 ORTHO05D005920 2.5e-104 382.9 261 74.3
Gorai.002G117300 Gossypium raimondii HOM05D004753 ORTHO05D005920 5.6e-104 381.7 292 69.5
Actinidia01484 Actinidia chinensis HOM05D004753 ORTHO05D005920 6.2e-103 378.3 271 75.6
Medtr4g075050 Medicago truncatula HOM05D004753 ORTHO05D005920 1.4e-102 377.1 326 63.5
Zm00001eb016460 Zea mays HOM05D004753 ORTHO05D005920 1.8e-102 376.7 310 61.6
AagrBONN_evm.TU.Sc2ySwM_362.2675 Anthoceros agrestis HOM05D004753 ORTHO05D005920 2.4e-99 366.3 302 60.9
Mapoly0097s0041 Marchantia polymorpha HOM05D004753 ORTHO05D005920 4.2e-99 365.5 302 58.6
Aqoxy311s002 Aquilegia oxysepala HOM05D004753 ORTHO05D005920 3.5e-98 362.5 235 77.4
Psat7g177400 Pisum sativum HOM05D004753 ORTHO05D005920 7.8e-98 361.3 238 76.1
CBR_g227 Chara braunii HOM05D004753 ORTHO05D005920 5.3e-86 322.0 246 63.4
Actinidia32213 Actinidia chinensis HOM05D004753 ORTHO05D005920 9.0e-86 321.2 242 70.7
Cre10.g450879 Chlamydomonas reinhardtii HOM05D004753 ORTHO05D005920 1.9e-75 287.0 288 49.0
MCO08G191 Micromonas commoda HOM05D004753 ORTHO05D005920 2.1e-74 283.5 304 48.4
THA.LOC104801723 Tarenaya hassleriana HOM05D004753 ORTHO05D005920 2.3e-73 280.0 149 88.6
Sed0023746 Sechium edule HOM05D004753 ORTHO05D005920 3.9e-73 279.3 319 51.1
Gorai.012G092400 Gossypium raimondii HOM05D004753 ORTHO05D005920 1.2e-66 257.7 166 78.3
PRCOL_00006477 Prasinoderma coloniale HOM05D004753 ORTHO05D005920 2.6e-53 213.4 238 44.5
AUR62033152 Chenopodium quinoa HOM05D004753 ORTHO05D005920 2.6e-48 196.8 158 65.2
Migut.B01152 Erythranthe guttata HOM05D004753 ORTHO05D005920 3.8e-44 183.0 112 80.4
Haze_27315 Corylus avellana HOM05D004753 ORTHO05D005920 2.7e-42 176.8 291 36.8
Gohir.D11G077800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 1.7e-39 167.5 190 51.1
Cfa026076 Carpinus fangiana HOM05D004753 ORTHO05D005920 2.2e-39 167.2 368 32.9
Gohir.D04G081932 Gossypium hirsutum HOM05D004753 ORTHO05D005920 1.2e-34 151.4 94 77.7
Gohir.D02G011800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 3.6e-34 149.8 94 76.6
Gorai.005G015000 Gossypium raimondii HOM05D004753 ORTHO05D005920 3.6e-34 149.8 94 76.6
MD08G1232400 Malus domestica HOM05D004753 ORTHO05D005920 2.3e-33 147.1 106 70.8
arahy.Tifrunner.gnm1.ann1.81M7HI Arachis hypogaea HOM05D004753 ORTHO05D005920 3.4e-32 143.3 97 77.3
Actinidia16175 Actinidia chinensis HOM05D004753 ORTHO05D005920 5.7e-32 142.5 82 85.4
arahy.Tifrunner.gnm1.ann1.JRXS1U Arachis hypogaea HOM05D004753 ORTHO05D005920 9.8e-32 141.7 95 77.9
TAR629G0138 Trochodendron aralioides HOM05D004753 ORTHO05D005920 4.3e-19 99.8 100 57.0
Gorai.007G256100 Gossypium raimondii HOM05D004753 ORTHO05D005920 9.5e-19 98.6 73 67.1
Migut.D00217 Erythranthe guttata HOM05D004753 ORTHO05D005920 2.6e-16 90.5 67 70.1
PGSC0003DMG400004411 Solanum tuberosum HOM05D004753 ORTHO05D005920 3.4e-16 90.1 53 81.1
TAR624G1091 Trochodendron aralioides HOM05D004877 ORTHO05D005942 4.4e-16 89.7 59 74.6
CANSAT21G1846 Cannabis sativa HOM05D000521 ORTHO05D000384 1.3e-15 88.2 51 84.3
Hma1.2p1_1471F.1_g285675 Hydrangea macrophylla HOM05D004753 ORTHO05D005920 7.8e-13 79.0 48 77.1
Hma1.2p1_1471F.1_g285690 Hydrangea macrophylla HOM05D004753 ORTHO05D005920 7.8e-13 79.0 48 77.1
Gorai.004G103000 Gossypium raimondii HOM05D002536 ORTHO05D006290 5.8e-08 62.8 84 44.0


User provided reference genes

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