Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.011G201200 Phaseolus vulgaris HOM05D003977 ORTHO05D004536 0.0e+00 1989.5 1013 100.0
VMungo1127G0455 Vigna mungo HOM05D003977 ORTHO05D004536 0.0e+00 1895.9 1015 95.6
Glyma.15G230300 Glycine max HOM05D003977 ORTHO05D004536 0.0e+00 1838.2 1005 93.1
Glyma.13G192400 Glycine max HOM05D003977 ORTHO05D004536 0.0e+00 1830.8 1013 92.3
Glyma.04G192200 Glycine max HOM05D003977 ORTHO05D004536 0.0e+00 1788.5 1014 90.9
Ca_23978_v3 Cicer arietinum L. HOM05D003977 ORTHO05D004536 0.0e+00 1707.2 1048 84.3
Medtr8g040560 Medicago truncatula HOM05D003977 ORTHO05D004536 0.0e+00 1674.4 1028 84.3
Psat4g145000 Pisum sativum HOM05D003977 ORTHO05D004536 0.0e+00 1674.4 1029 84.1
arahy.Tifrunner.gnm1.ann1.I0XR4S Arachis hypogaea HOM05D003977 ORTHO05D004536 0.0e+00 1672.1 1045 83.0
Lalb_Chr03g0032201 Lupinus albus HOM05D003977 ORTHO05D004536 0.0e+00 1664.8 1013 84.4
TPR.G8543 Trifolium pratense HOM05D003977 ORTHO05D004536 0.0e+00 1664.4 1034 83.6
arahy.Tifrunner.gnm1.ann1.Q9GEU7 Arachis hypogaea HOM05D003977 ORTHO05D004536 0.0e+00 1649.8 1011 84.2
Lj3g0027102 Lotus japonicus HOM05D003977 ORTHO05D004536 0.0e+00 1649.4 1059 82.2
Lj1g0022785 Lotus japonicus HOM05D003977 ORTHO05D004536 0.0e+00 1648.6 1030 83.5
Lalb_Chr19g0132941 Lupinus albus HOM05D003977 ORTHO05D004536 0.0e+00 1628.2 1001 82.9
RcHm_v2.0_Chr1g0326641 Rosa chinensis HOM05D003977 ORTHO05D004536 0.0e+00 1530.4 1033 76.5
QL93p0049_0031 Quercus lobata HOM05D003977 ORTHO05D004536 0.0e+00 1523.8 1041 76.1
Haze_02995 Corylus avellana HOM05D003977 ORTHO05D004536 0.0e+00 1519.2 1047 75.6
QL04p021130 Quercus lobata HOM05D003977 ORTHO05D004536 0.0e+00 1517.7 1041 75.9
MD07G1045800 Malus domestica HOM05D003977 ORTHO05D004536 0.0e+00 1510.0 1022 76.7
CiPaw.06G056400 Carya illinoinensis HOM05D003977 ORTHO05D004536 0.0e+00 1506.9 1028 75.6
Cfa010949 Carpinus fangiana HOM05D003977 ORTHO05D004536 0.0e+00 1505.0 1038 75.4
Dinv06987 Davidia involucrata HOM05D003977 ORTHO05D004536 0.0e+00 1504.2 1026 75.8
FvH4_7g03720 Fragaria vesca HOM05D003977 ORTHO05D004536 0.0e+00 1499.2 1033 75.2
Atru.chr12.1306 Acer truncatum HOM05D003977 ORTHO05D004536 0.0e+00 1490.7 1004 76.3
Ciclev10000128m.g Citrus clementina HOM05D003977 ORTHO05D004536 0.0e+00 1490.3 1018 75.7
FAN06G3123 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1488.8 1033 74.9
Prupe.2G042800 Prunus persica HOM05D003977 ORTHO05D004536 0.0e+00 1487.2 1034 75.7
Dinv14623 Davidia involucrata HOM05D003977 ORTHO05D004536 0.0e+00 1486.1 1024 75.2
ClCG05G026990 Citrullus lanatus HOM05D003977 ORTHO05D004536 0.0e+00 1482.6 1022 73.8
FAN01G0005 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1480.3 1040 73.9
CiPaw.14G009300 Carya illinoinensis HOM05D003977 ORTHO05D004536 0.0e+00 1476.5 1028 75.0
GSVIVG01035560001 Vitis vinifera HOM05D003977 ORTHO05D004536 0.0e+00 1476.5 1005 76.3
FAN03G2084 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1474.1 1033 74.2
MELO3C012492.2 Cucumis melo HOM05D003977 ORTHO05D004536 0.0e+00 1469.9 1023 73.4
CsaV3_5G036930 Cucumis sativus L. HOM05D003977 ORTHO05D004536 0.0e+00 1469.5 1023 73.4
TAR622G1067 Trochodendron aralioides HOM05D003977 ORTHO05D004536 0.0e+00 1469.1 1008 74.7
Sed0027944 Sechium edule HOM05D003977 ORTHO05D004536 0.0e+00 1461.8 1024 73.5
Potri.001G031400 Populus trichocarpa HOM05D003977 ORTHO05D004536 0.0e+00 1460.3 1042 73.1
Rhsim12G0015900 Rhododendron simsii HOM05D003977 ORTHO05D004536 0.0e+00 1456.4 1025 73.7
TWI38G1846 Tripterygium wilfordii HOM05D003977 ORTHO05D004536 0.0e+00 1452.6 1005 74.3
FAN10G3794 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1444.5 1033 73.0
Nn4g22094 Nelumbo nucifera HOM05D003977 ORTHO05D004536 0.0e+00 1442.6 1006 73.7
Sabra01G0022500 Salix brachista HOM05D003977 ORTHO05D004536 0.0e+00 1437.9 1084 70.5
Prupe.8G086800 Prunus persica HOM05D003977 ORTHO05D004536 0.0e+00 1434.1 1031 73.8
TWI15G1223 Tripterygium wilfordii HOM05D003977 ORTHO05D004536 0.0e+00 1432.2 1001 72.9
MD02G1277700 Malus domestica HOM05D003977 ORTHO05D004536 0.0e+00 1427.9 976 76.1
vmacro01007 Vaccinium macrocarpon HOM05D003977 ORTHO05D004536 0.0e+00 1426.4 1048 71.9
Duzib106G1228 Durio zibethinus HOM05D003977 ORTHO05D004536 0.0e+00 1416.4 1032 72.1
Sed0009106 Sechium edule HOM05D003977 ORTHO05D004536 0.0e+00 1416.0 1003 72.6
Duzib114G0684 Durio zibethinus HOM05D003977 ORTHO05D004536 0.0e+00 1407.9 1020 72.4
CANSAT56G0684 Cannabis sativa HOM05D003977 ORTHO05D004536 0.0e+00 1406.3 1013 73.0
Gohir.D04G016400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1398.3 1028 71.3
Gohir.A05G399500 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1397.9 1030 71.3
Thecc.10G142800 Theobroma cacao HOM05D003977 ORTHO05D004536 0.0e+00 1396.7 1022 71.7
THA.LOC104799327 Tarenaya hassleriana HOM05D003977 ORTHO05D004536 0.0e+00 1394.8 1028 71.0
Gorai.012G019100 Gossypium raimondii HOM05D003977 ORTHO05D004536 0.0e+00 1394.0 1035 70.9
Nn3g16238 Nelumbo nucifera HOM05D003977 ORTHO05D004536 0.0e+00 1394.0 1011 71.8
PGSC0003DMG400011581 Solanum tuberosum HOM05D003977 ORTHO05D004536 0.0e+00 1394.0 1021 70.7
CSS0046878 Camellia sinensis var. sinensis HOM05D003977 ORTHO05D004536 0.0e+00 1393.3 1023 70.9
Gohir.D04G016500 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1392.5 1014 72.0
Gorai.012G019200 Gossypium raimondii HOM05D003977 ORTHO05D004536 0.0e+00 1391.7 1014 72.0
Sopen09g034250 Solanum pennellii HOM05D003977 ORTHO05D004536 0.0e+00 1376.7 1021 70.4
Aa31LG7G12510 Aethionema arabicum HOM05D003977 ORTHO05D004536 0.0e+00 1373.2 1008 70.8
DCAR_004259 Daucus carota HOM05D003977 ORTHO05D004536 0.0e+00 1373.2 1025 70.0
DCAR_004260 Daucus carota HOM05D003977 ORTHO05D004536 0.0e+00 1373.2 1025 70.0
PGR031G0564 Punica granatum HOM05D003977 ORTHO05D004536 0.0e+00 1369.8 1003 70.4
Peaxi162Scf00047g01540 Petunia axillaris HOM05D003977 ORTHO05D004536 0.0e+00 1369.0 1021 70.1
THA.LOC104826752 Tarenaya hassleriana HOM05D003977 ORTHO05D004536 0.0e+00 1369.0 1034 69.9
Eucgr.G03211 Eucalyptus grandis HOM05D003977 ORTHO05D004536 0.0e+00 1368.2 1035 69.4
Solyc09g091280.4 Solanum lycopersicum HOM05D003977 ORTHO05D004536 0.0e+00 1367.1 1021 70.0
Cc11_g14880 Coffea canephora HOM05D003977 ORTHO05D004536 0.0e+00 1366.7 1023 69.6
MSTRG.444 Avicennia marina HOM05D003977 ORTHO05D004536 0.0e+00 1359.7 1006 71.0
COL.COLO4_20737 Corchorus olitorius HOM05D003977 ORTHO05D004536 0.0e+00 1359.0 1030 70.4
Aqoxy5G03020 Aquilegia oxysepala HOM05D003977 ORTHO05D004536 0.0e+00 1357.8 1024 69.9
HanXRQChr06g0175421 Helianthus annuus HOM05D003977 ORTHO05D004536 0.0e+00 1351.3 1028 68.4
MBI11_g07996_MAGBIO Magnolia biondii HOM05D003977 ORTHO05D004536 0.0e+00 1351.3 1005 71.2
PSO017G2490 Papaver somniferum HOM05D003977 ORTHO05D004536 0.0e+00 1350.1 1037 68.8
CAN.G1588.14 Capsicum annuum HOM05D003977 ORTHO05D004536 0.0e+00 1347.4 1011 69.5
PSO478G2410 Papaver somniferum HOM05D003977 ORTHO05D004536 0.0e+00 1347.4 1037 68.6
Sc02g0008490 Simmondsia chinensis HOM05D003977 ORTHO05D004536 0.0e+00 1346.6 1027 68.3
Migut.K01127 Erythranthe guttata HOM05D003977 ORTHO05D004536 0.0e+00 1345.9 1009 69.9
Sp3g10500 Schrenkiella parvula HOM05D003977 ORTHO05D004536 0.0e+00 1336.2 1029 68.8
EL10Ac1g02273 Beta vulgaris HOM05D003977 ORTHO05D004536 0.0e+00 1335.9 1069 65.9
Carub.0003s1164 Capsella rubella HOM05D003977 ORTHO05D004536 0.0e+00 1334.3 1040 68.5
Manes.03G097800 Manihot esculenta HOM05D003977 ORTHO05D004536 0.0e+00 1332.8 890 77.1
DCAR_008196 Daucus carota HOM05D003977 ORTHO05D004536 0.0e+00 1331.2 1006 69.0
ECA246G4717 Erigeron canadensis HOM05D003977 ORTHO05D004536 0.0e+00 1327.0 1017 67.6
AT3G12280 Arabidopsis thaliana HOM05D003977 ORTHO05D004536 0.0e+00 1324.7 1031 68.4
AL3G23940 Arabidopsis lyrata HOM05D003977 ORTHO05D004536 0.0e+00 1324.3 1030 68.0
TAR629G1670 Trochodendron aralioides HOM05D003977 ORTHO05D004536 0.0e+00 1324.3 913 74.0
Manes.16G045800 Manihot esculenta HOM05D003977 ORTHO05D004536 0.0e+00 1322.8 891 77.4
Thhalv10019977m.g Eutrema salsugineum HOM05D003977 ORTHO05D004536 0.0e+00 1320.4 1026 68.2
A05p37080 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1317.8 1029 68.1
AUR62035738 Chenopodium quinoa HOM05D003977 ORTHO05D004536 0.0e+00 1316.2 1027 66.7
BolC5t34217H Brassica oleracea HOM05D003977 ORTHO05D004536 0.0e+00 1313.9 1028 67.7
CARHR086830 Cardamine hirsuta HOM05D003977 ORTHO05D004536 0.0e+00 1312.0 1033 67.3
C05p55510 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1307.7 1029 67.7
AUR62033843 Chenopodium quinoa HOM05D003977 ORTHO05D004536 0.0e+00 1306.2 1033 66.1
C01p53050 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1296.2 1038 66.4
BcaC09g48227 Brassica carinata HOM05D003977 ORTHO05D004536 0.0e+00 1293.9 1039 66.4
BolC1t05248H Brassica oleracea HOM05D003977 ORTHO05D004536 0.0e+00 1293.9 1038 66.2
Gohir.A05G399400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1291.2 926 73.7
Lsat_1_v5_gn_3_33021 Lactuca sativa HOM05D003977 ORTHO05D004536 0.0e+00 1289.2 996 67.8
AUR62041503 Chenopodium quinoa HOM05D003977 ORTHO05D004536 0.0e+00 1287.7 1031 65.7
SalBow2G0230 Salvia bowleyana HOM05D003977 ORTHO05D004536 0.0e+00 1273.1 1008 66.8
Gorai.009G299000 Gossypium raimondii HOM05D003977 ORTHO05D004536 0.0e+00 1268.4 1015 65.8
C03p45560 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1266.9 1026 66.7
Hund13302 Selenicereus undatus HOM05D003977 ORTHO05D004536 0.0e+00 1266.9 1033 65.2
BolC3t16833H Brassica oleracea HOM05D003977 ORTHO05D004536 0.0e+00 1263.4 1027 66.3
BcaB04g18687 Brassica carinata HOM05D003977 ORTHO05D004536 0.0e+00 1262.7 1030 65.2
SGA_v2.0_scaffold81G25979 Striga asiatica HOM05D003977 ORTHO05D004536 0.0e+00 1260.7 1025 65.7
A03p37570 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1257.7 1006 66.7
Gohir.D05G284400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1251.1 988 66.7
Gohir.A05G283400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1247.3 1007 65.5
BraA03t12911Z Brassica rapa HOM05D003977 ORTHO05D004536 0.0e+00 1246.1 1042 64.8
ATR0582G127 Amborella trichopoda HOM05D003977 ORTHO05D004536 0.0e+00 1237.6 1017 64.3
Ah.05g166690 Amaranthus hybridus HOM05D003977 ORTHO05D004536 0.0e+00 1199.9 932 67.4
HPP92_000321 Vanilla planifolia HOM05D003977 ORTHO05D004536 0.0e+00 1176.8 1007 62.1
CDE09G1395 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 0.0e+00 1169.1 1029 63.6
PSO478G5179 Papaver somniferum HOM05D003977 ORTHO05D004536 0.0e+00 1158.7 982 62.2
Os08g0538700 Oryza sativa ssp. japonica HOM05D003977 ORTHO05D004536 0.0e+00 1156.4 1034 61.5
Nitab4.5_0002182g0050 Nicotiana tabacum HOM05D003977 ORTHO05D004536 0.0e+00 1155.2 1036 62.5
Nitab4.5_0008702g0020 Nicotiana tabacum HOM05D003977 ORTHO05D004536 0.0e+00 1151.7 1044 61.7
Zm00001eb037120 Zea mays HOM05D003977 ORTHO05D004536 0.0e+00 1122.5 1012 60.5
SEGI_35648 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 0.0e+00 1117.1 1033 59.1
BcaC01g04055 Brassica carinata HOM05D003977 ORTHO05D004536 0.0e+00 1108.6 849 68.4
unitig_26.g10435 Utricularia gibba HOM05D003977 ORTHO05D004536 0.0e+00 1104.7 1049 58.3
CSS0026343 Camellia sinensis var. sinensis HOM05D003977 ORTHO05D004536 3.9e-297 1025.0 1039 57.4
Cpa.g.sc169.40 Carica papaya HOM05D003977 ORTHO05D004536 1.9e-296 1022.7 994 57.6
SEGI_33786 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 2.8e-287 992.3 894 59.5
CDE02G2393 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 1.3e-281 973.4 800 67.9
Zm00001eb198220 Zea mays HOM05D003977 ORTHO05D004536 4.3e-264 915.2 828 60.1
Lj3A1077G55 Lonicera japonica HOM05D003977 ORTHO05D004536 6.9e-262 907.9 718 68.8
Os11g0533500 Oryza sativa ssp. japonica HOM05D003977 ORTHO05D004536 3.9e-257 892.1 991 52.2
MBI11_g02479_MAGBIO Magnolia biondii HOM05D003977 ORTHO05D004536 6.3e-255 884.8 741 66.9
Mapoly0131s0020 Marchantia polymorpha HOM05D003977 ORTHO05D004536 4.2e-243 845.5 1025 47.7
Pp3c15_2800 Physcomitrium patens HOM05D003977 ORTHO05D004536 6.8e-241 838.2 975 48.7
Pp3c9_2440 Physcomitrium patens HOM05D003977 ORTHO05D004536 8.3e-239 831.2 979 48.2
AagrBONN_evm.TU.Sc2ySwM_362.2961 Anthoceros agrestis HOM05D003977 ORTHO05D004536 1.5e-232 810.4 1004 47.2
Zm00001eb197990 Zea mays HOM05D003977 ORTHO05D004536 9.8e-224 781.2 825 52.0
Zm00001eb113470 Zea mays HOM05D003977 ORTHO05D004536 3.9e-220 769.2 817 53.2
Ciclev10003102m.g Citrus clementina HOM05D003977 ORTHO05D004536 2.0e-208 730.3 721 61.9
unitig_22.g6370 Utricularia gibba HOM05D003977 ORTHO05D004536 1.9e-198 697.2 635 59.1
SMO134G0004 Selaginella moellendorffii HOM05D003977 ORTHO05D004536 1.2e-197 694.5 909 45.0
HPP92_009801 Vanilla planifolia HOM05D002468 ORTHO05D005371 6.4e-183 645.6 828 49.4
GSVIVG01032958001 Vitis vinifera HOM05D003977 ORTHO05D004536 2.4e-169 600.5 626 54.6
SMO141G0281 Selaginella moellendorffii HOM05D003977 ORTHO05D004536 1.3e-164 584.7 954 39.2
Manes.11G074000 Manihot esculenta HOM05D003977 ORTHO05D004536 4.8e-154 549.7 670 50.0
Ciclev10014630m.g Citrus clementina HOM05D003977 ORTHO05D004536 8.5e-151 538.9 625 51.2
Pp3c19_9580 Physcomitrium patens HOM05D003977 ORTHO05D004536 8.5e-151 538.9 634 49.7
CBR_g45825 Chara braunii HOM05D003977 ORTHO05D004536 1.3e-138 498.4 1135 33.2
BraA05t22505Z Brassica rapa HOM05D003977 ORTHO05D004536 7.5e-123 446.0 401 57.1
Atru.chr6.2718 Acer truncatum HOM05D003977 ORTHO05D004536 4.1e-121 440.3 638 45.0
Hma1.2p1_0073F.1_g038600 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 8.0e-117 426.0 316 70.9
QL04p021333 Quercus lobata HOM05D003977 ORTHO05D004536 3.8e-111 407.1 546 44.9
Hma1.2p1_0164F.1_g073080 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 5.9e-104 383.3 239 80.8
unitig_22.g6371 Utricularia gibba HOM05D003977 ORTHO05D004536 7.5e-91 339.7 268 67.9
SEGI_04896 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 1.9e-89 335.1 312 59.3
PRCOL_00001859 Prasinoderma coloniale HOM05D003977 ORTHO05D004536 3.9e-71 274.2 966 28.2
HanXRQChr04g0106401 Helianthus annuus HOM05D003977 ORTHO05D004536 4.8e-69 267.3 256 57.0
Cre06.g255450 Chlamydomonas reinhardtii HOM05D003977 ORTHO05D004536 5.6e-54 217.2 920 24.0
MCO08G295 Micromonas commoda HOM05D003977 ORTHO05D004536 5.3e-52 210.7 1034 25.6
CDE02G2628 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 2.2e-50 205.3 212 50.5
Pp3c19_9550 Physcomitrium patens HOM05D003977 ORTHO05D004536 1.2e-48 199.5 174 54.6
C02p49640 Brassica napus HOM05D003977 ORTHO05D004536 1.1e-44 186.4 174 56.9
BolC2t11042H Brassica oleracea HOM05D003977 ORTHO05D004536 1.0e-42 179.9 155 60.6
Pp3c19_9596 Physcomitrium patens HOM05D003977 ORTHO05D004536 6.5e-42 177.2 239 38.9
Oeu034276.1 Olea europaea HOM05D003977 ORTHO05D004536 5.5e-33 147.5 178 49.4
Hma1.2p1_0468F.1_g158780 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 1.8e-28 132.5 127 51.2
SalBow1G6973 Salvia bowleyana HOM05D003977 ORTHO05D004536 1.0e-26 126.7 129 48.8
SalBow2G2207 Salvia bowleyana HOM05D003977 ORTHO05D004536 1.8e-20 105.9 113 46.9
Hma1.2p1_0112F.1_g054450 Hydrangea macrophylla HOM05D000462 ORTHO05D004536 5.9e-19 100.9 103 47.6
Hma1.2p1_1036F.1_g250510 Hydrangea macrophylla HOM05D000462 ORTHO05D004536 6.5e-18 97.4 79 55.7
Medtr3g006170 Medicago truncatula HOM05D003977 ORTHO05D004536 3.6e-16 91.7 67 68.7
Rhsim02G0185900 Rhododendron simsii HOM05D016728 ORTHO05D340288 8.8e-15 87.0 63 74.6
Actinidia09594 Actinidia chinensis HOM05D003977 ORTHO05D004536 7.2e-09 67.4 55 65.5
Actinidia33992 Actinidia chinensis HOM05D003977 ORTHO05D004536 2.1e-08 65.9 54 66.7
Hma1.2p1_0417F.1_g148820 Hydrangea macrophylla HOM05D000825 ORTHO05D003684 1.8e-07 62.8 60 63.3
TPR.G37560 Trifolium pratense HOM05D010661 ORTHO05D011785 2.0e-06 59.3 106 37.7


User provided reference genes

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