Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.011G167550 Phaseolus vulgaris HOM05D000087 ORTHO05D005735 0.0e+00 1965.3 1015 100.0
Lj6g0001276 Lotus japonicus HOM05D000087 ORTHO05D005735 0.0e+00 1488.8 1020 76.9
Psat5g111000 Pisum sativum HOM05D000087 ORTHO05D005735 0.0e+00 1424.1 1021 73.2
Lalb_Chr14g0362591 Lupinus albus HOM05D000087 ORTHO05D005735 0.0e+00 1389.8 1023 71.6
Medtr3g080640 Medicago truncatula HOM05D000087 ORTHO05D005735 0.0e+00 1332.8 930 75.3
arahy.Tifrunner.gnm1.ann1.0XGN9Z Arachis hypogaea HOM05D000087 ORTHO05D005735 0.0e+00 1119.0 1040 61.3
RcHm_v2.0_Chr7g0188131 Rosa chinensis HOM05D000087 ORTHO05D005735 0.0e+00 1106.3 1020 59.7
Prupe.5G137300 Prunus persica HOM05D000087 ORTHO05D005735 0.0e+00 1094.7 1029 58.9
FvH4_5g10170 Fragaria vesca HOM05D000087 ORTHO05D005735 0.0e+00 1094.0 1022 58.6
FAN04G3195 Fragaria x ananassa HOM05D000087 ORTHO05D005735 0.0e+00 1093.6 1021 58.9
FAN08G3226 Fragaria x ananassa HOM05D000087 ORTHO05D005735 0.0e+00 1077.8 1022 57.9
Glyma.06G180700 Glycine max HOM05D000087 ORTHO05D005735 9.0e-310 1067.0 649 83.5
MD06G1127500 Malus domestica HOM05D000087 ORTHO05D005735 9.9e-309 1063.5 1036 56.9
FAN18G4270 Fragaria x ananassa HOM05D000087 ORTHO05D005735 6.0e-306 1054.3 1022 57.0
GSVIVG01019707001 Vitis vinifera HOM05D000087 ORTHO05D005735 2.5e-304 1048.9 1017 56.2
Ciclev10018581m.g Citrus clementina HOM05D000087 ORTHO05D005735 4.3e-304 1048.1 1019 55.2
Duzib068G0232 Durio zibethinus HOM05D000087 ORTHO05D005735 4.8e-303 1044.6 1035 55.2
Manes.17G015000 Manihot esculenta HOM05D000087 ORTHO05D005735 1.7e-300 1036.2 1019 55.3
arahy.Tifrunner.gnm1.ann1.DH86LW Arachis hypogaea HOM05D000087 ORTHO05D005735 6.0e-298 1027.7 1245 50.8
Thecc.03G213700 Theobroma cacao HOM05D000087 ORTHO05D005735 1.0e-297 1026.9 1031 54.4
Gorai.004G127300 Gossypium raimondii HOM05D000087 ORTHO05D005735 1.8e-297 1026.2 1032 54.7
Gohir.A08G107500 Gossypium hirsutum HOM05D000087 ORTHO05D005735 4.3e-296 1021.5 1032 54.7
TWI81G0850 Tripterygium wilfordii HOM05D000087 ORTHO05D005735 1.5e-293 1013.1 1031 53.4
TAR629G0355 Trochodendron aralioides HOM05D000087 ORTHO05D005735 1.4e-291 1006.5 1050 53.2
QL02p026653 Quercus lobata HOM05D000087 ORTHO05D005735 1.8e-289 999.6 966 57.7
VMungo1127G0184 Vigna mungo HOM05D000087 ORTHO05D005735 1.5e-288 996.5 554 91.0
Gohir.D08G120500 Gossypium hirsutum HOM05D000087 ORTHO05D005735 4.3e-288 995.0 1021 54.1
CsaV3_5G001350 Cucumis sativus L. HOM05D000087 ORTHO05D005735 7.9e-282 974.2 1034 52.9
CANSAT64G2851 Cannabis sativa HOM05D000087 ORTHO05D005735 1.0e-281 973.8 1016 54.1
Sabra16G0307100 Salix brachista HOM05D000087 ORTHO05D005735 5.1e-281 971.5 984 54.3
Cfa011874 Carpinus fangiana HOM05D000087 ORTHO05D005735 1.9e-280 969.5 964 56.3
Dinv11465 Davidia involucrata HOM05D000087 ORTHO05D005735 1.9e-280 969.5 1039 52.2
Lj2C147G10 Lonicera japonica HOM05D000087 ORTHO05D005735 2.4e-278 962.6 1048 52.4
Sed0004639 Sechium edule HOM05D000087 ORTHO05D005735 3.2e-275 952.2 1033 53.0
Eucgr.D02539 Eucalyptus grandis HOM05D000087 ORTHO05D005735 2.8e-271 939.1 1012 51.5
ClCG01G001230 Citrullus lanatus HOM05D000087 ORTHO05D005735 5.5e-267 924.9 1134 48.8
PSO063G0654 Papaver somniferum HOM05D000087 ORTHO05D005735 4.4e-264 915.2 1048 49.0
Haze_09232 Corylus avellana HOM05D000087 ORTHO05D005735 1.3e-263 913.7 976 53.2
EL10Ac2g03880 Beta vulgaris HOM05D000087 ORTHO05D005735 2.8e-263 912.5 1024 49.2
MELO3C005812.2 Cucumis melo HOM05D000087 ORTHO05D005735 6.3e-263 911.4 1096 49.3
Nn3g18737 Nelumbo nucifera HOM05D000087 ORTHO05D005735 1.5e-261 906.7 1050 49.0
CiPaw.11G106200 Carya illinoinensis HOM05D000087 ORTHO05D005735 7.7e-261 904.4 857 58.0
HanXRQChr01g0016041 Helianthus annuus HOM05D000087 ORTHO05D005735 7.7e-261 904.4 990 50.8
AUR62039113 Chenopodium quinoa HOM05D000087 ORTHO05D005735 5.0e-260 901.7 1025 50.1
AUR62009145 Chenopodium quinoa HOM05D000087 ORTHO05D005735 1.1e-256 890.6 1024 49.7
ECA246G1365 Erigeron canadensis HOM05D000087 ORTHO05D005735 2.2e-255 886.3 975 50.2
C01p21480 Brassica napus HOM05D000087 ORTHO05D005735 1.4e-254 883.6 985 49.9
BolC1t02068H Brassica oleracea HOM05D000087 ORTHO05D005735 1.4e-254 883.6 985 49.9
PSO782G2195 Papaver somniferum HOM05D000087 ORTHO05D005735 1.4e-254 883.6 1050 47.8
AT4G38120 Arabidopsis thaliana HOM05D000087 ORTHO05D005735 1.7e-252 876.7 1032 49.5
Actinidia22240 Actinidia chinensis HOM05D000087 ORTHO05D005735 2.9e-252 875.9 1036 49.4
THA.LOC104806594 Tarenaya hassleriana HOM05D000087 ORTHO05D005735 3.8e-252 875.5 998 51.1
Sp7g37630 Schrenkiella parvula HOM05D000087 ORTHO05D005735 1.5e-251 873.6 1026 49.5
A01p17150 Brassica napus HOM05D000087 ORTHO05D005735 2.5e-251 872.8 983 49.4
MSTRG.22476 Avicennia marina HOM05D000087 ORTHO05D005735 1.6e-250 870.2 1023 48.1
Carub.0007s0001 Capsella rubella HOM05D000087 ORTHO05D005735 2.7e-250 869.4 1026 48.7
BraA01t01671Z Brassica rapa HOM05D000087 ORTHO05D005735 1.0e-249 867.5 987 49.1
AL7G10010 Arabidopsis lyrata HOM05D000087 ORTHO05D005735 2.3e-249 866.3 1029 49.2
Sc01g0010950 Simmondsia chinensis HOM05D000087 ORTHO05D005735 2.3e-249 866.3 1049 47.6
Solyc07g008450.3 Solanum lycopersicum HOM05D000087 ORTHO05D005735 4.0e-249 865.5 984 49.0
Sopen07g004380 Solanum pennellii HOM05D000087 ORTHO05D005735 1.5e-248 863.6 984 48.7
Lsat_1_v5_gn_3_13301 Lactuca sativa HOM05D000087 ORTHO05D005735 1.7e-247 860.1 957 49.4
PGR031G2531 Punica granatum HOM05D000087 ORTHO05D005735 1.2e-245 854.0 989 48.7
Migut.H02249 Erythranthe guttata HOM05D000087 ORTHO05D005735 5.9e-245 851.7 982 48.0
CAN.G1548.2 Capsicum annuum HOM05D000087 ORTHO05D005735 4.2e-243 845.5 1025 47.1
Cc08_g17160 Coffea canephora HOM05D000087 ORTHO05D005735 2.7e-242 842.8 1027 47.3
Peaxi162Scf00046g00228 Petunia axillaris HOM05D000087 ORTHO05D005735 7.5e-240 834.7 979 48.7
Hund03336 Selenicereus undatus HOM05D000087 ORTHO05D005735 7.5e-240 834.7 1028 49.4
Rhsim02G0255700 Rhododendron simsii HOM05D000087 ORTHO05D005735 2.0e-237 826.6 1052 45.9
SGA_v2.0_scaffold123G33449 Striga asiatica HOM05D000087 ORTHO05D005735 1.7e-236 823.5 1158 43.1
MBI04_g04806_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 2.8e-234 816.2 1076 45.4
Nitab4.5_0007502g0010 Nicotiana tabacum HOM05D000087 ORTHO05D005735 8.3e-231 804.7 1001 47.2
Aa31LG6G16960 Aethionema arabicum HOM05D000087 ORTHO05D005735 1.7e-223 780.4 969 47.9
ATR0579G142 Amborella trichopoda HOM05D000087 ORTHO05D005735 2.9e-223 779.6 1048 43.7
Nitab4.5_0000491g0190 Nicotiana tabacum HOM05D000087 ORTHO05D005735 4.9e-223 778.9 1030 45.3
Thhalv10024269m.g Eutrema salsugineum HOM05D000087 ORTHO05D005735 8.9e-209 731.5 985 45.3
Zm00001eb416210 Zea mays HOM05D000087 ORTHO05D005735 1.7e-207 727.2 988 43.2
vmacro08519 Vaccinium macrocarpon HOM05D000087 ORTHO05D005735 4.0e-201 706.1 930 46.0
DCAR_010123 Daucus carota HOM05D000087 ORTHO05D005735 8.7e-196 688.3 842 46.3
Potri.001G454200 Populus trichocarpa HOM05D000087 ORTHO05D005735 7.1e-190 668.7 670 54.0
FAN18G0494 Fragaria x ananassa HOM05D000087 ORTHO05D005735 1.8e-180 637.5 832 49.2
CDE02G0276 Ceratophyllum demersum HOM05D000087 ORTHO05D005735 7.1e-174 615.5 736 47.4
Mapoly0043s0141 Marchantia polymorpha HOM05D000087 ORTHO05D005735 2.0e-168 597.4 950 39.1
Glyma.06G181000 Glycine max HOM05D000087 ORTHO05D005735 2.6e-168 597.0 368 85.9
Ca_16291_v3 Cicer arietinum L. HOM05D000087 ORTHO05D005735 1.9e-166 590.9 419 75.7
Aqoxy5G04397 Aquilegia oxysepala HOM05D000087 ORTHO05D005735 9.3e-166 588.6 637 50.9
Atru.chr9.2610 Acer truncatum HOM05D000087 ORTHO05D005735 9.0e-161 572.0 490 61.6
SMO367G1062 Selaginella moellendorffii HOM05D000087 ORTHO05D005735 9.7e-155 552.0 995 36.0
Pp3c3_37190 Physcomitrium patens HOM05D000087 ORTHO05D005735 1.5e-152 544.7 921 36.8
HPP92_008913 Vanilla planifolia HOM05D000087 ORTHO05D005735 3.8e-143 513.5 672 43.5
MD14G1143100 Malus domestica HOM05D000087 ORTHO05D005735 3.2e-142 510.4 586 50.7
HPP92_028198 Vanilla planifolia HOM05D000087 ORTHO05D005735 4.5e-136 490.0 635 44.7
CARHR143600 Cardamine hirsuta HOM05D000087 ORTHO05D005735 2.6e-123 447.6 442 53.8
Os08g0152900 Oryza sativa ssp. japonica HOM05D000087 ORTHO05D005735 7.5e-123 446.0 570 43.9
Cpa.g.sc37.117 Carica papaya HOM05D000087 ORTHO05D005735 3.6e-109 400.6 432 53.7
Hma1.2p1_0198F.1_g085370 Hydrangea macrophylla HOM05D000087 ORTHO05D005735 3.5e-104 384.0 429 49.9
CBR_g3175 Chara braunii HOM05D000087 ORTHO05D005735 1.0e-87 329.3 749 32.2
SEGI_15816 Sequoiadendron giganteum HOM05D000087 ORTHO05D005735 1.0e-79 302.8 364 48.1
COL.COLO4_10863 Corchorus olitorius HOM05D000087 ORTHO05D005735 4.0e-76 290.8 1010 27.2
MD14G1142900 Malus domestica HOM05D000087 ORTHO05D005735 6.0e-72 276.9 258 58.5
Oeu019648.1 Olea europaea HOM05D000087 ORTHO05D005735 4.3e-62 244.2 338 44.7
MCO07G377 Micromonas commoda HOM05D000087 ORTHO05D005735 5.5e-57 227.3 871 25.9
AL8G10020 Arabidopsis lyrata HOM05D000087 ORTHO05D005735 9.6e-54 216.5 266 48.5
SEGI_26992 Sequoiadendron giganteum HOM05D000087 ORTHO05D005735 4.2e-49 201.1 266 44.0
CSS0029196 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 2.1e-48 198.7 175 60.6
Duzib084G0823 Durio zibethinus HOM05D000087 ORTHO05D005735 2.8e-45 188.3 168 57.7
Duzib084G1107 Durio zibethinus HOM05D000087 ORTHO05D005735 6.3e-45 187.2 315 41.0
Cpa.g.sc363.3 Carica papaya HOM05D000087 ORTHO05D005735 5.3e-44 184.1 170 56.5
CSS0034403 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 7.7e-43 180.3 236 47.9
CSS0007327 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 3.2e-41 174.9 246 44.7
VMungo0145G0001 Vigna mungo HOM05D000087 ORTHO05D005735 1.1e-38 166.4 97 87.6
VMungo1080G1218 Vigna mungo HOM05D000087 ORTHO05D005735 2.8e-37 161.8 110 77.3
AUR62009162 Chenopodium quinoa HOM05D000087 ORTHO05D005735 1.4e-36 159.5 577 27.2
FAN13G3301 Fragaria x ananassa HOM05D000087 ORTHO05D005735 1.0e-31 143.3 134 53.7
CARHR293880 Cardamine hirsuta HOM05D000087 ORTHO05D005735 1.4e-31 142.9 122 56.6
vmacro08520 Vaccinium macrocarpon HOM05D000087 ORTHO05D005735 2.3e-31 142.1 200 42.5
Medtr3g080660 Medicago truncatula HOM05D000087 ORTHO05D005735 1.8e-28 132.5 95 72.6
Cre03.g166600 Chlamydomonas reinhardtii HOM05D000087 ORTHO05D005735 5.3e-28 131.0 1145 21.4
HPP92_028197 Vanilla planifolia HOM05D000087 ORTHO05D005735 9.1e-28 130.2 170 45.9
CARHR293870 Cardamine hirsuta HOM05D000087 ORTHO05D005735 2.9e-26 125.2 121 52.1
SalBow4G1355 Salvia bowleyana HOM05D000087 ORTHO05D005735 9.7e-22 110.2 143 42.0
Oeu053260.1 Olea europaea HOM05D000087 ORTHO05D010194 3.5e-19 101.7 100 55.0
SEGI_26806 Sequoiadendron giganteum HOM05D000087 ORTHO05D005735 4.2e-17 94.7 141 39.0
RcHm_v2.0_Chr7g0188121 Rosa chinensis HOM05D000087 ORTHO05D005735 2.1e-16 92.4 71 64.8
CSS0025060 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 3.6e-16 91.7 122 45.9
MBI04_g04804_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 4.0e-15 88.2 99 47.5
Duzib084G0615 Durio zibethinus HOM05D000087 ORTHO05D005735 1.2e-14 86.7 94 46.8
CARHR291390 Cardamine hirsuta HOM05D000087 ORTHO05D005735 1.7e-13 82.8 64 59.4
CSS0033050 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 3.5e-11 75.1 76 51.3
CARHR046160 Cardamine hirsuta HOM05D000087 ORTHO05D005735 4.5e-11 74.7 58 69.0
Hma1.2p1_0198F.1_g085360 Hydrangea macrophylla HOM05D000087 ORTHO05D005735 1.0e-10 73.6 90 46.7
SEGI_26704 Sequoiadendron giganteum HOM05D000087 ORTHO05D005735 1.7e-10 72.8 81 40.7
CSS0050207 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 6.5e-10 70.9 90 43.3
SalBow1G5284 Salvia bowleyana HOM05D000087 ORTHO05D005735 1.5e-09 69.7 73 53.4
MBI17_g33112_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 2.5e-09 68.9 80 48.8
Rhsim02G0255800 Rhododendron simsii HOM05D000087 ORTHO05D005735 2.5e-09 68.9 94 41.5
CSS0049190 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 3.6e-08 65.1 88 47.7
CSS0034676 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 6.1e-08 64.3 89 42.7
MBI04_g04802_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 8.8e-07 60.5 64 53.1
CiPaw.11G106300 Carya illinoinensis HOM05D000087 ORTHO05D005735 2.6e-06 58.9 85 45.9
MD14G1142800 Malus domestica HOM05D000087 ORTHO05D005735 7.5e-06 57.4 77 45.5


User provided reference genes

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