Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.010G089200 Phaseolus vulgaris HOM05D004815 ORTHO05D005742 2.5e-206 721.8 362 100.0
VMungo0331G0142 Vigna mungo HOM05D004815 ORTHO05D005742 1.1e-182 643.3 343 93.0
Glyma.03G018700 Glycine max HOM05D004815 ORTHO05D005742 5.3e-172 607.8 344 89.8
Glyma.07G080200 Glycine max HOM05D004815 ORTHO05D005742 2.0e-171 605.9 344 89.5
Lalb_Chr17g0340041 Lupinus albus HOM05D004815 ORTHO05D005742 7.5e-150 534.3 345 78.6
Lj3g0020425 Lotus japonicus HOM05D004815 ORTHO05D005742 7.7e-147 524.2 345 77.4
Medtr8g033040 Medicago truncatula HOM05D004815 ORTHO05D005742 1.1e-145 520.4 345 77.7
Ca_23774_v3 Cicer arietinum L. HOM05D004815 ORTHO05D005742 8.8e-143 510.8 345 76.5
TPR.G17590 Trifolium pratense HOM05D004815 ORTHO05D005742 3.1e-140 502.3 347 75.5
arahy.Tifrunner.gnm1.ann1.GZV6IQ Arachis hypogaea HOM05D004815 ORTHO05D005742 7.0e-140 501.1 344 74.7
arahy.Tifrunner.gnm1.ann1.32Q5MD Arachis hypogaea HOM05D004815 ORTHO05D005742 3.5e-139 498.8 344 75.0
Lalb_Chr10g0097591 Lupinus albus HOM05D004815 ORTHO05D005742 3.5e-139 498.8 345 74.2
TPR.G17395 Trifolium pratense HOM05D004815 ORTHO05D005742 5.9e-139 498.0 346 75.4
Haze_16704 Corylus avellana HOM05D004815 ORTHO05D005742 9.5e-137 490.7 345 73.0
Manes.05G040900 Manihot esculenta HOM05D004815 ORTHO05D005742 1.2e-134 483.8 347 72.9
CiPaw.01G257600 Carya illinoinensis HOM05D004815 ORTHO05D005742 2.8e-133 479.2 350 70.3
Potri.002G152300 Populus trichocarpa HOM05D004815 ORTHO05D005742 4.9e-133 478.4 344 71.2
Manes.01G263200 Manihot esculenta HOM05D004815 ORTHO05D005742 1.4e-132 476.9 346 70.8
Cfa001810 Carpinus fangiana HOM05D004815 ORTHO05D005742 3.1e-132 475.7 347 71.8
Ciclev10020702m.g Citrus clementina HOM05D004815 ORTHO05D005742 5.4e-132 474.9 350 70.6
MD02G1195800 Malus domestica HOM05D004815 ORTHO05D005742 1.2e-131 473.8 347 69.2
Duzib133G0793 Durio zibethinus HOM05D004815 ORTHO05D005742 1.1e-129 467.2 349 69.3
Atru.chr5.381_Atru.chr5.382 Acer truncatum HOM05D004815 ORTHO05D005742 5.6e-129 464.9 347 71.8
Psat4g200880 Pisum sativum HOM05D004815 ORTHO05D005742 5.6e-129 464.9 327 75.2
Lalb_Chr19g0127171 Lupinus albus HOM05D004815 ORTHO05D005742 6.1e-128 461.5 350 68.9
Potri.014G078300 Populus trichocarpa HOM05D004815 ORTHO05D005742 6.1e-128 461.5 344 68.9
TAR629G0568 Trochodendron aralioides HOM05D004815 ORTHO05D005742 5.2e-127 458.4 348 68.7
RcHm_v2.0_Chr1g0351921 Rosa chinensis HOM05D004815 ORTHO05D005742 1.2e-126 457.2 347 68.3
Cpa.g.sc18.178 Carica papaya HOM05D004815 ORTHO05D005742 2.6e-126 456.1 347 68.6
Gorai.001G172600 Gossypium raimondii HOM05D004815 ORTHO05D005742 3.4e-126 455.7 348 69.0
TWI23G0970 Tripterygium wilfordii HOM05D004815 ORTHO05D005742 3.4e-126 455.7 344 68.3
GSVIVG01027589001 Vitis vinifera HOM05D004815 ORTHO05D005742 7.5e-126 454.5 347 66.9
Gohir.A07G144600 Gossypium hirsutum HOM05D004815 ORTHO05D005742 1.3e-125 453.8 348 68.7
Thecc.01G370200 Theobroma cacao HOM05D004815 ORTHO05D005742 2.9e-125 452.6 347 68.9
TWI59G0538 Tripterygium wilfordii HOM05D004815 ORTHO05D005742 2.9e-125 452.6 347 66.3
Gohir.D07G150500 Gossypium hirsutum HOM05D004815 ORTHO05D005742 3.7e-125 452.2 348 68.7
Sabra14G0053800 Salix brachista HOM05D004815 ORTHO05D005742 4.9e-125 451.8 354 68.1
CANSAT56G0719 Cannabis sativa HOM05D004815 ORTHO05D005742 2.8e-120 436.0 348 64.9
MELO3C022521.2 Cucumis melo HOM05D004815 ORTHO05D005742 3.6e-120 435.6 347 63.7
FAN01G1324 Fragaria x ananassa HOM05D004815 ORTHO05D005742 1.0e-119 434.1 347 65.4
FAN10G2694 Fragaria x ananassa HOM05D004815 ORTHO05D005742 1.4e-119 433.7 350 64.9
CsaV3_6G005940 Cucumis sativus L. HOM05D004815 ORTHO05D005742 8.9e-119 431.0 347 63.4
QL08p050919 Quercus lobata HOM05D004815 ORTHO05D005742 2.6e-118 429.5 353 64.3
TAR636G2513 Trochodendron aralioides HOM05D004815 ORTHO05D005742 3.4e-118 429.1 352 64.2
Duzib138G1778 Durio zibethinus HOM05D004815 ORTHO05D005742 9.8e-118 427.6 349 65.3
Sabra02G0120600 Salix brachista HOM05D004815 ORTHO05D005742 3.7e-117 425.6 343 65.3
Actinidia31455 Actinidia chinensis HOM05D004815 ORTHO05D005742 1.2e-115 420.6 353 62.9
Aqoxy7G00483 Aquilegia oxysepala HOM05D004815 ORTHO05D005742 2.7e-115 419.5 348 65.8
Cc02_g37080 Coffea canephora HOM05D004815 ORTHO05D005742 4.6e-115 418.7 348 61.8
Lj7C524T7 Lonicera japonica HOM05D004815 ORTHO05D005742 1.7e-114 416.8 344 64.0
FAN06G3277 Fragaria x ananassa HOM05D004815 ORTHO05D005742 2.1e-112 409.8 344 63.4
FAN06G3416 Fragaria x ananassa HOM05D004815 ORTHO05D005742 2.1e-112 409.8 344 63.4
Sed0027777 Sechium edule HOM05D004815 ORTHO05D005742 2.0e-110 403.3 349 60.2
Solyc01g091900.3 Solanum lycopersicum HOM05D004815 ORTHO05D005742 5.8e-110 401.7 354 59.3
SalBow7G0216 Salvia bowleyana HOM05D004815 ORTHO05D005742 1.7e-109 400.2 347 59.1
DCAR_006900 Daucus carota HOM05D004815 ORTHO05D005742 2.9e-109 399.4 344 62.8
Lalb_Chr01g0021231 Lupinus albus HOM05D004815 ORTHO05D005742 1.1e-108 397.5 366 60.1
PGSC0003DMG400000005 Solanum tuberosum HOM05D004815 ORTHO05D005742 1.1e-108 397.5 350 58.9
Cc09_g02920 Coffea canephora HOM05D004815 ORTHO05D005742 1.9e-108 396.7 347 60.8
AUR62033376 Chenopodium quinoa HOM05D004815 ORTHO05D005742 2.4e-108 396.4 345 60.0
FvH4_7g12840 Fragaria vesca HOM05D004815 ORTHO05D005742 3.2e-108 396.0 329 63.8
EL10Ac1g00976 Beta vulgaris HOM05D004815 ORTHO05D005742 7.1e-108 394.8 348 60.6
Peaxi162Scf00021g00232 Petunia axillaris HOM05D004815 ORTHO05D005742 2.1e-107 393.3 351 58.4
Prupe.2G152800 Prunus persica HOM05D004815 ORTHO05D005742 3.5e-107 392.5 301 68.1
Nitab4.5_0013229g0020 Nicotiana tabacum HOM05D004815 ORTHO05D005742 4.6e-107 392.1 347 57.6
PGR031G2979 Punica granatum HOM05D004815 ORTHO05D005742 7.8e-107 391.3 348 58.6
ClCG06G000170 Citrullus lanatus HOM05D004815 ORTHO05D005742 1.7e-106 390.2 347 59.4
Carub.0004s2834 Capsella rubella HOM05D004815 ORTHO05D005742 2.3e-106 389.8 353 58.6
CAN.G170.62 Capsicum annuum HOM05D004815 ORTHO05D005742 2.3e-106 389.8 350 57.4
Rhsim07G0022400 Rhododendron simsii HOM05D004815 ORTHO05D005742 3.0e-106 389.4 340 61.8
Aa31LG1G27160 Aethionema arabicum HOM05D004815 ORTHO05D005742 1.1e-103 380.9 359 57.4
PSO478G4379 Papaver somniferum HOM05D004815 ORTHO05D005742 1.8e-103 380.2 348 58.3
PSO782G2788 Papaver somniferum HOM05D004815 ORTHO05D005742 2.3e-103 379.8 348 58.6
SGA_v2.0_scaffold153G37057 Striga asiatica HOM05D004815 ORTHO05D005742 2.3e-103 379.8 344 59.0
MBI04_g28567_MAGBIO Magnolia biondii HOM05D004815 ORTHO05D005742 6.8e-103 378.3 332 61.1
Sp4g27730 Schrenkiella parvula HOM05D004815 ORTHO05D005742 6.8e-103 378.3 351 55.8
Thhalv10001499m.g Eutrema salsugineum HOM05D004815 ORTHO05D005742 3.4e-102 375.9 350 55.7
Actinidia09581 Actinidia chinensis HOM05D004815 ORTHO05D005742 5.8e-102 375.2 322 61.5
MSTRG.20784 Avicennia marina HOM05D004815 ORTHO05D005742 7.6e-102 374.8 346 57.8
AL4G44860 Arabidopsis lyrata HOM05D004815 ORTHO05D005742 1.3e-101 374.0 357 56.3
AT2G45690 Arabidopsis thaliana HOM05D004815 ORTHO05D005742 1.3e-101 374.0 348 56.3
Ciclev10023945m.g Citrus clementina HOM05D004815 ORTHO05D005742 1.3e-101 374.0 336 60.4
Oeu059223.1 Olea europaea HOM05D003859 ORTHO05D004927 2.9e-101 372.9 330 60.3
BcaB01g03258 Brassica carinata HOM05D004815 ORTHO05D005742 1.4e-100 370.5 355 54.9
A03p25310 Brassica napus HOM05D004815 ORTHO05D005742 3.2e-100 369.4 350 56.0
A05p05650 Brassica napus HOM05D004815 ORTHO05D005742 1.6e-99 367.1 353 54.7
BraA05t19537Z Brassica rapa HOM05D004815 ORTHO05D005742 2.7e-99 366.3 353 54.7
Hund27330 Selenicereus undatus HOM05D004815 ORTHO05D005742 3.5e-99 365.9 361 55.4
Migut.B01673 Erythranthe guttata HOM05D004815 ORTHO05D005742 4.6e-99 365.5 344 56.1
HanXRQChr06g0169351 Helianthus annuus HOM05D004815 ORTHO05D005742 1.0e-98 364.4 345 58.0
vmacro13348 Vaccinium macrocarpon HOM05D004815 ORTHO05D005742 1.5e-97 360.5 380 54.2
BcaC02g12192 Brassica carinata HOM05D004815 ORTHO05D005742 1.9e-97 360.1 359 54.0
ECA236G5005 Erigeron canadensis HOM05D004815 ORTHO05D005742 2.5e-97 359.8 348 58.0
BcaB02g09018 Brassica carinata HOM05D004815 ORTHO05D005742 4.3e-97 359.0 360 54.2
Sc02g0002260 Simmondsia chinensis HOM05D004815 ORTHO05D005742 7.3e-97 358.2 333 56.5
C03p30200 Brassica napus HOM05D004815 ORTHO05D005742 9.6e-97 357.8 353 54.1
BolC3t15369H Brassica oleracea HOM05D004815 ORTHO05D005742 1.2e-96 357.5 353 54.4
BolC4t22283H Brassica oleracea HOM05D004815 ORTHO05D005742 1.2e-96 357.5 357 53.5
BcaC01g05112 Brassica carinata HOM05D004815 ORTHO05D005742 6.2e-96 355.1 354 54.0
BraA03t11735Z Brassica rapa HOM05D004815 ORTHO05D005742 6.2e-96 355.1 355 53.0
Sopen01g037670 Solanum pennellii HOM05D004815 ORTHO05D005742 8.1e-96 354.8 326 57.7
Sed0004795 Sechium edule HOM05D004815 ORTHO05D005742 3.1e-95 352.8 299 60.9
Solyc06g074460.4 Solanum lycopersicum HOM05D004815 ORTHO05D005742 6.9e-95 351.7 345 51.3
Sopen06g030930 Solanum pennellii HOM05D004815 ORTHO05D005742 6.9e-95 351.7 345 51.6
Lsat_1_v5_gn_7_8041 Lactuca sativa HOM05D004815 ORTHO05D005742 2.6e-94 349.7 330 57.9
Nn1g01309 Nelumbo nucifera HOM05D004815 ORTHO05D005742 7.6e-94 348.2 302 61.9
Peaxi162Scf00114g00211 Petunia axillaris HOM05D004815 ORTHO05D005742 1.3e-93 347.4 345 52.2
CAN.G919.13 Capsicum annuum HOM05D004815 ORTHO05D005742 1.1e-92 344.4 345 51.0
HanXRQChr04g0121731 Helianthus annuus HOM05D004815 ORTHO05D005742 1.2e-91 340.9 330 57.6
HPP92_004960 Vanilla planifolia HOM05D004815 ORTHO05D005742 1.0e-90 337.8 350 49.7
Nitab4.5_0001901g0030 Nicotiana tabacum HOM05D004815 ORTHO05D005742 1.3e-90 337.4 342 50.9
MD02G1195700 Malus domestica HOM05D004815 ORTHO05D005742 1.6e-88 330.5 310 58.7
AUR62004281 Chenopodium quinoa HOM05D004815 ORTHO05D005742 2.1e-88 330.1 345 52.8
C04p06610 Brassica napus HOM05D004815 ORTHO05D005742 2.4e-87 326.6 338 52.7
unitig_749.g14360 Utricularia gibba HOM05D003518 ORTHO05D005164 3.8e-85 319.3 325 54.5
Zm00001eb208530 Zea mays HOM05D004815 ORTHO05D005742 8.4e-85 318.2 357 50.7
Nitab4.5_0005459g0020 Nicotiana tabacum HOM05D004815 ORTHO05D005742 1.1e-84 317.8 365 47.4
Ah.15g094120 Amaranthus hybridus HOM05D001215 ORTHO05D001387 1.9e-84 317.0 340 52.1
THA.LOC104817269 Tarenaya hassleriana HOM05D004815 ORTHO05D005742 1.8e-79 300.4 310 54.5
Os02g0123200 Oryza sativa ssp. japonica HOM05D004815 ORTHO05D005742 2.3e-74 283.5 339 47.5
CARHR140910 Cardamine hirsuta HOM05D004815 ORTHO05D005742 3.0e-74 283.1 297 52.9
SEGI_15318 Sequoiadendron giganteum HOM05D004815 ORTHO05D005742 7.4e-73 278.5 355 44.8
SHI13492 Sapria himalayana HOM05D004815 ORTHO05D005742 9.0e-71 271.6 362 45.0
Eucgr.D02393 Eucalyptus grandis HOM05D004815 ORTHO05D005742 5.8e-70 268.9 241 59.3
Nitab4.5_0001127g0010 Nicotiana tabacum HOM05D004815 ORTHO05D005742 1.7e-69 267.3 347 45.5
CSS0047010 Camellia sinensis var. sinensis HOM05D004815 ORTHO05D005742 1.1e-65 254.6 277 53.8
Dinv43746 Davidia involucrata HOM05D004815 ORTHO05D005742 4.3e-65 252.7 273 52.4
CSS0023679 Camellia sinensis var. sinensis HOM05D004815 ORTHO05D005742 3.1e-63 246.5 291 50.9
SMO147G0187 Selaginella moellendorffii HOM05D004815 ORTHO05D005742 1.4e-60 237.7 357 38.9
COL.COLO4_12639 Corchorus olitorius HOM05D004815 ORTHO05D005742 1.9e-60 237.3 192 63.0
Mapoly0047s0037 Marchantia polymorpha HOM05D004815 ORTHO05D005742 7.9e-59 231.9 378 38.6
PGSC0003DMG400007146 Solanum tuberosum HOM05D004815 ORTHO05D005742 5.7e-57 225.7 260 47.7
CDE11G0368 Ceratophyllum demersum HOM05D004815 ORTHO05D005742 4.8e-56 222.6 214 52.8
Eucgr.D02410 Eucalyptus grandis HOM05D004815 ORTHO05D005742 2.0e-54 217.2 241 51.5
AagrBONN_evm.TU.Sc2ySwM_228.5506 Anthoceros agrestis HOM05D004815 ORTHO05D005742 4.5e-54 216.1 359 37.6
Dinv32412 Davidia involucrata HOM05D004815 ORTHO05D005742 6.1e-51 205.7 236 51.7
Eucgr.D02397 Eucalyptus grandis HOM05D004815 ORTHO05D005742 9.1e-47 191.8 209 54.1
ATR0757G223 Amborella trichopoda HOM05D004815 ORTHO05D005742 1.5e-46 191.0 203 51.2
Pp3c20_6130 Physcomitrium patens HOM05D004815 ORTHO05D005742 5.9e-46 189.1 321 39.3
Gohir.A11G084200 Gossypium hirsutum HOM05D004815 ORTHO05D005742 2.2e-45 187.2 230 49.1
ATR0757G181 Amborella trichopoda HOM05D004815 ORTHO05D005742 2.9e-45 186.8 151 63.6
AagrBONN_evm.TU.Sc2ySwM_369.172 Anthoceros agrestis HOM05D004815 ORTHO05D005742 1.2e-38 164.9 357 31.4
CDE11G0585 Ceratophyllum demersum HOM05D004815 ORTHO05D005742 4.4e-33 146.4 114 61.4
FAN10G0991 Fragaria x ananassa HOM05D004815 ORTHO05D005742 2.8e-32 143.7 92 72.8
Glyma.04G148600 Glycine max HOM05D004815 ORTHO05D005742 7.0e-31 139.0 75 92.0
PRCOL_00005618 Prasinoderma coloniale HOM05D004815 ORTHO05D005742 1.9e-20 104.4 418 23.9
Aa31LG6G10720 Aethionema arabicum HOM05D004815 ORTHO05D005742 2.1e-19 100.9 109 51.4
CBR_g3181 Chara braunii HOM05D004815 ORTHO05D005742 8.0e-19 99.0 159 38.4
COL.COLO4_24134 Corchorus olitorius HOM05D000638 ORTHO05D000801 2.0e-17 94.4 73 67.1
RcHm_v2.0_Chr1g0351871 Rosa chinensis HOM05D004815 ORTHO05D005742 1.5e-09 68.2 48 70.8
Aa31sc1021G10 Aethionema arabicum HOM05D004815 ORTHO05D005742 2.9e-08 63.9 105 39.0
RcHm_v2.0_Chr1g0351881 Rosa chinensis HOM05D004815 ORTHO05D005742 4.6e-06 56.6 42 71.4


User provided reference genes

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