Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.010G069800 Phaseolus vulgaris HOM05D007036 ORTHO05D008885 4.7e-216 754.2 373 100.0
Phvul.011G085400 Phaseolus vulgaris HOM05D007036 ORTHO05D008885 5.6e-209 730.7 373 96.8
VMungo0331G1618 Vigna mungo HOM05D007036 ORTHO05D008885 1.8e-178 629.4 353 89.2
Glyma.01G132800 Glycine max HOM05D007036 ORTHO05D008885 5.1e-178 627.9 371 83.0
Glyma.03G035400 Glycine max HOM05D007036 ORTHO05D008885 4.8e-176 621.3 355 85.4
Lj2g0012301 Lotus japonicus HOM05D007036 ORTHO05D008885 4.1e-167 591.7 373 78.3
Lalb_Chr19g0129471 Lupinus albus HOM05D007036 ORTHO05D008885 1.0e-149 533.9 359 74.1
arahy.Tifrunner.gnm1.ann1.UBG147 Arachis hypogaea HOM05D007036 ORTHO05D008885 6.1e-147 524.6 358 70.9
arahy.Tifrunner.gnm1.ann1.1YAE55 Arachis hypogaea HOM05D007036 ORTHO05D008885 1.8e-146 523.1 358 70.7
Haze_19103 Corylus avellana HOM05D007036 ORTHO05D008885 4.7e-139 498.4 366 66.4
Cfa020750 Carpinus fangiana HOM05D007036 ORTHO05D008885 1.0e-138 497.3 345 69.0
Atru.chr7.958 Acer truncatum HOM05D007036 ORTHO05D008885 9.7e-137 490.7 369 62.9
RcHm_v2.0_Chr4g0397671 Rosa chinensis HOM05D007036 ORTHO05D008885 2.2e-136 489.6 369 64.2
TPR.G36679 Trifolium pratense HOM05D007036 ORTHO05D008885 2.2e-136 489.6 337 70.3
Medtr1g051205 Medicago truncatula HOM05D007036 ORTHO05D008885 1.8e-135 486.5 325 70.8
Medtr0004s0610 Medicago truncatula HOM05D007036 ORTHO05D008885 4.1e-135 485.3 330 69.7
FAN17G1483 Fragaria x ananassa HOM05D007036 ORTHO05D008885 4.5e-134 481.9 369 63.4
Ciclev10010414m.g Citrus clementina HOM05D007036 ORTHO05D008885 5.9e-134 481.5 369 63.7
TWI34G0744 Tripterygium wilfordii HOM05D007036 ORTHO05D008885 8.5e-133 477.6 369 62.6
FAN12G1049 Fragaria x ananassa HOM05D007036 ORTHO05D008885 1.5e-132 476.9 369 62.6
VMungo0540G1720 Vigna mungo HOM05D007036 ORTHO05D008885 4.2e-132 475.3 246 94.3
Sabra18G0128300 Salix brachista HOM05D007036 ORTHO05D008885 1.6e-131 473.4 370 63.0
Sabra18G0121200 Salix brachista HOM05D007036 ORTHO05D008885 2.1e-131 473.0 370 62.7
Lj5P749T15 Lonicera japonica HOM05D007036 ORTHO05D008885 6.1e-131 471.5 371 60.6
Psat1g099640 Pisum sativum HOM05D007036 ORTHO05D008885 8.0e-131 471.1 337 67.1
Gohir.D06G112000 Gossypium hirsutum HOM05D007036 ORTHO05D008885 2.3e-130 469.5 370 60.8
Gorai.010G127600 Gossypium raimondii HOM05D007036 ORTHO05D008885 3.0e-130 469.2 370 60.8
ClCG11G011370 Citrullus lanatus HOM05D007036 ORTHO05D008885 8.8e-130 467.6 370 60.8
Gohir.A06G110000 Gossypium hirsutum HOM05D007036 ORTHO05D008885 1.2e-129 467.2 370 60.5
MELO3C003928.2 Cucumis melo HOM05D007036 ORTHO05D008885 2.0e-129 466.5 370 61.1
CsaV3_2G009100 Cucumis sativus L. HOM05D007036 ORTHO05D008885 4.8e-128 461.8 348 63.5
Rhsim01G0110100 Rhododendron simsii HOM05D007036 ORTHO05D008885 6.3e-128 461.5 371 58.5
Aqoxy7G02614 Aquilegia oxysepala HOM05D007036 ORTHO05D008885 3.1e-127 459.1 369 61.5
Thecc.09G196200 Theobroma cacao HOM05D007036 ORTHO05D008885 4.1e-127 458.8 371 62.5
vmacro22700 Vaccinium macrocarpon HOM05D007036 ORTHO05D008885 1.6e-126 456.8 372 58.6
CANSAT80G2763 Cannabis sativa HOM05D007036 ORTHO05D008885 3.5e-126 455.7 352 61.1
Sed0028219 Sechium edule HOM05D007036 ORTHO05D008885 3.5e-126 455.7 348 62.4
Duzib168G0358 Durio zibethinus HOM05D007036 ORTHO05D008885 7.7e-126 454.5 370 59.5
TAR636G0074 Trochodendron aralioides HOM05D007036 ORTHO05D008885 7.7e-126 454.5 372 59.4
CSS0020574 Camellia sinensis var. sinensis HOM05D007036 ORTHO05D008885 1.2e-123 447.2 328 63.1
MD11G1028400 Malus domestica HOM05D007036 ORTHO05D008885 1.4e-122 443.7 370 60.3
Potri.018G146900 Populus trichocarpa HOM05D007036 ORTHO05D008885 1.2e-121 440.7 369 59.1
PGSC0003DMG400013697 Solanum tuberosum HOM05D007036 ORTHO05D008885 7.5e-121 438.0 368 57.1
Peaxi162Scf00954g00025 Petunia axillaris HOM05D007036 ORTHO05D008885 2.4e-119 433.0 351 59.0
AT3G42630 Arabidopsis thaliana HOM05D007036 ORTHO05D008885 5.4e-119 431.8 369 57.2
Carub.0001s3409 Capsella rubella HOM05D007036 ORTHO05D008885 5.4e-119 431.8 369 58.0
FvH4_4g06090 Fragaria vesca HOM05D007036 ORTHO05D008885 2.7e-118 429.5 297 69.4
BcaB01g00982 Brassica carinata HOM05D007036 ORTHO05D008885 2.3e-117 426.4 369 58.0
Sopen05g027850 Solanum pennellii HOM05D007036 ORTHO05D008885 2.9e-117 426.0 343 59.2
AL5G20840 Arabidopsis lyrata HOM05D007036 ORTHO05D008885 5.0e-117 425.2 369 56.4
Aa31LG4G9890 Aethionema arabicum HOM05D007036 ORTHO05D008885 8.6e-117 424.5 369 55.8
CAN.G106.6 Capsicum annuum HOM05D007036 ORTHO05D008885 8.6e-117 424.5 368 56.2
FAN07G1271 Fragaria x ananassa HOM05D007036 ORTHO05D008885 1.1e-116 424.1 348 60.1
Sp5g14950 Schrenkiella parvula HOM05D007036 ORTHO05D008885 9.5e-116 421.0 369 56.1
A06p20770 Brassica napus HOM05D007036 ORTHO05D008885 2.1e-115 419.9 369 55.8
BcaC01g01887 Brassica carinata HOM05D007036 ORTHO05D008885 1.0e-114 417.5 369 55.8
BraA06t25155Z Brassica rapa HOM05D007036 ORTHO05D008885 1.0e-114 417.5 369 56.1
Medtr5g068170 Medicago truncatula HOM05D007036 ORTHO05D008885 1.4e-114 417.2 327 62.1
C03p70950 Brassica napus HOM05D007036 ORTHO05D008885 3.0e-114 416.0 369 55.8
HanXRQChr09g0261951 Helianthus annuus HOM05D007036 ORTHO05D008885 5.2e-114 415.2 368 54.3
Oeu011819.1 Olea europaea HOM05D007036 ORTHO05D008885 6.8e-114 414.8 361 54.6
BolC3t19373H Brassica oleracea HOM05D007036 ORTHO05D008885 1.5e-113 413.7 369 55.6
Nitab4.5_0000404g0190 Nicotiana tabacum HOM05D007036 ORTHO05D008885 4.4e-113 412.1 365 54.8
Carub.0016s0003 Capsella rubella HOM05D007036 ORTHO05D008885 4.9e-112 408.7 361 56.0
AUR62029463 Chenopodium quinoa HOM05D007036 ORTHO05D008885 8.3e-112 407.9 313 62.6
CSS0014683 Camellia sinensis var. sinensis HOM05D007036 ORTHO05D008885 1.8e-111 406.8 286 65.7
Ah.07g208320 Amaranthus hybridus HOM05D007036 ORTHO05D008885 9.2e-111 404.4 320 61.6
CARHR153640 Cardamine hirsuta HOM05D007036 ORTHO05D008885 2.3e-109 399.8 369 53.4
PGR083G2517 Punica granatum HOM05D007036 ORTHO05D008885 2.3e-109 399.8 350 57.4
MSTRG.5959 Avicennia marina HOM05D007036 ORTHO05D008885 6.6e-109 398.3 312 60.3
MD13G1233100 Malus domestica HOM05D007036 ORTHO05D008885 2.5e-108 396.4 414 51.7
Migut.J00838 Erythranthe guttata HOM05D007036 ORTHO05D008885 3.3e-108 396.0 345 54.5
Manes.01G260400 Manihot esculenta HOM05D007036 ORTHO05D008885 1.4e-106 390.6 370 54.6
Lsat_1_v5_gn_6_31220 Lactuca sativa HOM05D007036 ORTHO05D008885 1.8e-106 390.2 335 55.2
Prupe.1G064400 Prunus persica HOM05D007036 ORTHO05D008885 6.8e-106 388.3 369 53.7
QL11p008742 Quercus lobata HOM05D007036 ORTHO05D008885 6.8e-106 388.3 368 53.3
unitig_26.g9126 Utricularia gibba HOM05D007036 ORTHO05D008885 3.4e-105 386.0 331 56.2
Cc00_g00150 Coffea canephora HOM05D007036 ORTHO05D008885 9.8e-105 384.4 340 55.0
Sc16g0002180 Simmondsia chinensis HOM05D007036 ORTHO05D008885 4.9e-104 382.1 361 54.6
ECA236G1169 Erigeron canadensis HOM05D007036 ORTHO05D008885 7.0e-103 378.3 353 51.6
CSS0018855 Camellia sinensis var. sinensis HOM05D007036 ORTHO05D008885 7.8e-102 374.8 328 55.8
GSVIVG01032259001 Vitis vinifera HOM05D007036 ORTHO05D008885 1.0e-101 374.4 369 52.8
SGA_v2.0_scaffold318G48469 Striga asiatica HOM05D007036 ORTHO05D008885 2.5e-100 369.8 368 50.8
Cpa.g.sc115.26 Carica papaya HOM05D007036 ORTHO05D008885 5.6e-100 368.6 246 70.3
Thhalv10003041m.g Eutrema salsugineum HOM05D007036 ORTHO05D008885 5.6e-100 368.6 369 50.4
Nn5g27062 Nelumbo nucifera HOM05D007036 ORTHO05D008885 2.8e-99 366.3 369 50.7
ATR0626G201 Amborella trichopoda HOM05D007036 ORTHO05D008885 2.7e-94 349.7 232 72.0
Os08g0520200 Oryza sativa ssp. japonica HOM05D007036 ORTHO05D008885 3.5e-94 349.4 362 50.8
DCAR_020462 Daucus carota HOM05D007036 ORTHO05D008885 6.0e-94 348.6 341 49.6
HPP92_028312 Vanilla planifolia HOM05D007036 ORTHO05D008885 6.0e-94 348.6 348 51.7
MBI13_g34303_MAGBIO Magnolia biondii HOM05D007036 ORTHO05D008885 4.3e-92 342.4 373 47.5
Zm00001eb035670 Zea mays HOM05D007036 ORTHO05D008885 1.8e-90 337.0 331 52.0
CiPaw.16G103900 Carya illinoinensis HOM05D007036 ORTHO05D008885 4.0e-90 335.9 372 48.1
Ca_04679_v3 Cicer arietinum L. HOM05D007036 ORTHO05D008885 4.4e-89 332.4 218 70.6
PSO063G5690 Papaver somniferum HOM05D007036 ORTHO05D008885 2.5e-84 316.6 303 53.1
COL.COLO4_04221 Corchorus olitorius HOM05D007036 ORTHO05D008885 2.8e-83 313.2 345 48.4
PSO170G3146 Papaver somniferum HOM05D007036 ORTHO05D008885 4.7e-83 312.4 208 69.2
CDE04G2486 Ceratophyllum demersum HOM05D007036 ORTHO05D008885 6.4e-80 302.0 291 52.2
Eucgr.C00064 Eucalyptus grandis HOM05D007036 ORTHO05D008885 1.0e-77 294.7 248 59.7
SEGI_31150 Sequoiadendron giganteum HOM05D007036 ORTHO05D008885 1.0e-77 294.7 298 49.7
CDE02G1188 Ceratophyllum demersum HOM05D007036 ORTHO05D004232 5.4e-71 272.3 205 62.9
COL.COLO4_06173 Corchorus olitorius HOM05D007036 ORTHO05D008885 7.1e-71 271.9 341 44.3
Lj5A765T51 Lonicera japonica HOM05D007036 ORTHO05D008885 2.1e-54 217.2 181 56.9
Oeu028822.1 Olea europaea HOM05D007036 ORTHO05D008885 1.1e-44 184.9 175 49.7
Mapoly0002s0203 Marchantia polymorpha HOM05D007036 ORTHO05D008885 1.8e-42 177.6 199 47.2
vmacro20769 Vaccinium macrocarpon HOM05D007036 ORTHO05D008885 5.0e-40 169.5 167 52.1
Dinv26474 Davidia involucrata HOM05D007036 ORTHO05D008885 4.4e-36 156.4 235 36.2
SMO347G0413 Selaginella moellendorffii HOM05D007036 ORTHO05D008885 7.7e-33 145.6 167 44.9
Pp3c4_3090 Physcomitrium patens HOM05D007036 ORTHO05D008885 1.3e-32 144.8 205 40.5
AagrBONN_evm.TU.Sc2ySwM_228.1431 Anthoceros agrestis HOM05D007036 ORTHO05D008885 6.7e-21 105.9 132 40.2
PGR142G1366 Punica granatum HOM05D007897 ORTHO05D010061 1.7e-19 101.3 246 30.1
Pp3c3_31860 Physcomitrium patens HOM05D007036 ORTHO05D008885 1.0e-13 82.0 174 31.0
VMungo1383G3288 Vigna mungo HOM05D007897 ORTHO05D010061 5.2e-13 79.7 187 33.2
Cc03_g09150 Coffea canephora HOM05D007897 ORTHO05D010061 1.5e-12 78.2 181 32.6
ATR0807G097 Amborella trichopoda HOM05D007897 ORTHO05D010061 2.6e-12 77.4 202 28.7
PSO017G4232 Papaver somniferum HOM05D007897 ORTHO05D010061 9.8e-12 75.5 193 31.6
MBI07_g06195_MAGBIO Magnolia biondii HOM05D007897 ORTHO05D010061 1.3e-11 75.1 194 31.4
Manes.05G198900 Manihot esculenta HOM05D007897 ORTHO05D010061 1.3e-11 75.1 198 29.8
PSO063G5193 Papaver somniferum HOM05D007897 ORTHO05D010061 1.3e-11 75.1 201 30.8
TWI23G0094 Tripterygium wilfordii HOM05D007897 ORTHO05D010061 2.2e-11 74.3 200 29.5
CSS0018651 Camellia sinensis var. sinensis HOM05D007897 ORTHO05D010061 2.8e-11 73.9 201 29.4
CSS0029276 Camellia sinensis var. sinensis HOM05D007897 ORTHO05D010061 2.8e-11 73.9 201 29.4
Phvul.001G265200 Phaseolus vulgaris HOM05D007897 ORTHO05D010061 2.8e-11 73.9 186 31.7
Oeu050722.1 Olea europaea HOM05D005839 ORTHO05D009229 4.8e-11 73.2 185 30.8
Oeu050723.3 Olea europaea HOM05D007897 ORTHO05D009229 1.4e-10 71.6 171 30.4
Sabra06G0059400 Salix brachista HOM05D007036 ORTHO05D008885 4.1e-10 70.1 151 31.1
CANSAT78G0179 Cannabis sativa HOM05D007897 ORTHO05D010061 1.6e-09 68.2 147 32.7
Nn8g41262 Nelumbo nucifera HOM05D007897 ORTHO05D010061 2.7e-09 67.4 202 29.2
Sed0009503 Sechium edule HOM05D007897 ORTHO05D010061 3.5e-09 67.0 192 28.1
Lalb_Chr03g0036571 Lupinus albus HOM05D007897 ORTHO05D010061 5.9e-09 66.2 198 30.3
Sabra14G0112700 Salix brachista HOM05D007897 ORTHO05D010061 1.3e-08 65.1 187 27.8
Medtr6g034745 Medicago truncatula HOM05D007036 ORTHO05D008885 1.7e-08 64.7 47 57.4
arahy.Tifrunner.gnm1.ann1.TEUF1S Arachis hypogaea HOM05D007897 ORTHO05D010061 2.3e-08 64.3 182 30.2
Potri.014G149500 Populus trichocarpa HOM05D007897 ORTHO05D010061 2.9e-08 63.9 187 27.8
Duzib212G0894 Durio zibethinus HOM05D007897 ORTHO05D010061 3.8e-08 63.5 219 26.5
arahy.Tifrunner.gnm1.ann1.T7EAWL Arachis hypogaea HOM05D007897 ORTHO05D010061 5.0e-08 63.2 182 29.7
TAR633G1464 Trochodendron aralioides HOM05D003039 ORTHO05D008410 1.1e-07 62.0 211 25.6
CiPaw.10G000500 Carya illinoinensis HOM05D000001 ORTHO05D000003 1.9e-07 61.2 238 21.8
MD04G1021700 Malus domestica HOM05D007897 ORTHO05D010061 1.9e-07 61.2 153 30.7
FvH4_6g47350 Fragaria vesca HOM05D000001 ORTHO05D000003 2.5e-07 60.8 165 29.1
FAN05G5494 Fragaria x ananassa HOM05D000001 ORTHO05D000003 4.2e-07 60.1 165 29.1
FAN02G4587 Fragaria x ananassa HOM05D000001 ORTHO05D000003 5.5e-07 59.7 165 29.1
Rhsim12G0110900 Rhododendron simsii HOM05D000001 ORTHO05D010426 7.2e-07 59.3 312 25.0
RcHm_v2.0_Chr2g0166381 Rosa chinensis HOM05D000001 ORTHO05D000003 7.2e-07 59.3 220 25.0
FAN09G4562 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.2e-06 58.5 165 27.9
C01p08100 Brassica napus HOM05D006258 ORTHO05D007961 1.6e-06 58.2 214 22.4
Glyma.18G003400 Glycine max HOM05D007897 ORTHO05D010061 1.6e-06 58.2 155 31.0
Aa31LG2G19560 Aethionema arabicum HOM05D006258 ORTHO05D007961 2.8e-06 57.4 272 19.5
A01p07350 Brassica napus HOM05D006258 ORTHO05D007961 2.8e-06 57.4 214 22.0
BolC1t00798H Brassica oleracea HOM05D006258 ORTHO05D007961 2.8e-06 57.4 214 22.9
BraA01t00683Z Brassica rapa HOM05D006258 ORTHO05D007961 2.8e-06 57.4 214 22.0
Sc07g0006310 Simmondsia chinensis HOM05D003039 ORTHO05D008410 2.8e-06 57.4 189 24.3
Actinidia13220 Actinidia chinensis HOM05D003039 ORTHO05D008410 3.6e-06 57.0 182 25.3
BcaC09g51872 Brassica carinata HOM05D006258 ORTHO05D007961 3.6e-06 57.0 214 22.9
Prupe.3G258100 Prunus persica HOM05D000001 ORTHO05D000003 3.6e-06 57.0 214 23.4
CiPaw.03G090800 Carya illinoinensis HOM05D000001 ORTHO05D000003 4.7e-06 56.6 214 24.8
Rhsim02G0205300 Rhododendron simsii HOM05D003039 ORTHO05D008410 6.1e-06 56.2 264 20.8
Rhsim10G0182600 Rhododendron simsii HOM05D000001 ORTHO05D010426 6.1e-06 56.2 245 23.3
BcaNung03436 Brassica carinata HOM05D006258 ORTHO05D007961 8.0e-06 55.8 229 22.3
Prupe.2G028200 Prunus persica HOM05D003039 ORTHO05D008410 8.0e-06 55.8 263 24.0
PGR102G3313 Punica granatum HOM05D000001 ORTHO05D000003 8.0e-06 55.8 145 29.7


User provided reference genes

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