Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G122100 Phaseolus vulgaris HOM05D001070 ORTHO05D002096 2.0e-30 135.2 71 100.0
Glyma.02G189000 Glycine max HOM05D001070 ORTHO05D002096 4.9e-21 104.0 57 91.2
Phvul.007G021600 Phaseolus vulgaris HOM05D001070 ORTHO05D002096 3.0e-18 94.7 49 100.0
EL10Ac5g11665 Beta vulgaris HOM05D001070 ORTHO05D002096 2.8e-16 88.2 56 78.6
CANSAT78G0545 Cannabis sativa HOM05D001070 ORTHO05D002096 8.1e-16 86.7 58 75.9
FAN13G2309 Fragaria x ananassa HOM05D001070 ORTHO05D002096 1.1e-15 86.3 58 75.9
Nn1g08628 Nelumbo nucifera HOM05D001070 ORTHO05D002096 1.4e-15 85.9 58 74.1
ATMG00370 Arabidopsis thaliana HOM05D001070 ORTHO05D002096 2.3e-15 85.1 49 83.7
CARHR282770 Cardamine hirsuta HOM05D001070 ORTHO05D002096 2.3e-15 85.1 49 83.7
Ciclev10010879m.g Citrus clementina HOM05D001070 ORTHO05D002096 3.1e-15 84.7 49 87.8
Ciclev10013927m.g Citrus clementina HOM05D001070 ORTHO05D002096 3.1e-15 84.7 49 87.8
Ciclev10013978m.g Citrus clementina HOM05D001070 ORTHO05D002096 3.1e-15 84.7 49 87.8
Ciclev10013980m.g Citrus clementina HOM05D001070 ORTHO05D002096 3.1e-15 84.7 49 87.8
Ciclev10013987m.g Citrus clementina HOM05D001070 ORTHO05D002096 3.1e-15 84.7 49 87.8
Ciclev10013999m.g Citrus clementina HOM05D001070 ORTHO05D002096 3.1e-15 84.7 49 87.8
Ciclev10014002m.g Citrus clementina HOM05D001070 ORTHO05D002096 3.1e-15 84.7 49 87.8
Ciclev10014005m.g Citrus clementina HOM05D001070 ORTHO05D002096 3.1e-15 84.7 49 87.8
Ciclev10027641m.g Citrus clementina HOM05D001070 ORTHO05D002096 3.1e-15 84.7 49 87.8
Ciclev10027654m.g Citrus clementina HOM05D001070 ORTHO05D002096 3.1e-15 84.7 49 87.8
Ciclev10030452m.g Citrus clementina HOM05D001070 ORTHO05D002096 3.1e-15 84.7 49 87.8
AL5G20280 Arabidopsis lyrata HOM05D001070 ORTHO05D002096 8.9e-15 83.2 49 83.7
AL7G50370 Arabidopsis lyrata HOM05D001070 ORTHO05D002096 8.9e-15 83.2 49 83.7
BcaC04g20701 Brassica carinata HOM05D001070 ORTHO05D002096 8.9e-15 83.2 49 83.7
A04p09360 Brassica napus HOM05D001070 ORTHO05D002096 8.9e-15 83.2 49 83.7
C09p40290 Brassica napus HOM05D001070 ORTHO05D002096 8.9e-15 83.2 49 83.7
BolSC28t60312H Brassica oleracea HOM05D001070 ORTHO05D002096 8.9e-15 83.2 49 83.7
BolSC28t60368H Brassica oleracea HOM05D001070 ORTHO05D002096 8.9e-15 83.2 49 83.7
BolSC29t60542H Brassica oleracea HOM05D001070 ORTHO05D002096 8.9e-15 83.2 49 83.7
BolSC35t60698H Brassica oleracea HOM05D001070 ORTHO05D002096 8.9e-15 83.2 49 83.7
BolSC35t60710H Brassica oleracea HOM05D001070 ORTHO05D002096 8.9e-15 83.2 49 83.7
BolSC44t60828H Brassica oleracea HOM05D001070 ORTHO05D002096 8.9e-15 83.2 49 83.7
BraSC103t45423Z Brassica rapa HOM05D001070 ORTHO05D002096 8.9e-15 83.2 49 83.7
BraSC138t45540Z Brassica rapa HOM05D001070 ORTHO05D002096 8.9e-15 83.2 49 83.7
BraSC159t45727Z Brassica rapa HOM05D001070 ORTHO05D002096 8.9e-15 83.2 49 83.7
BraSC48t46237Z Brassica rapa HOM05D001070 ORTHO05D002096 8.9e-15 83.2 49 83.7
BraSC48t46326Z Brassica rapa HOM05D001070 ORTHO05D002096 8.9e-15 83.2 49 83.7
BraSC54t46367Z Brassica rapa HOM05D001070 ORTHO05D002096 8.9e-15 83.2 49 83.7
BraSC59t46505Z Brassica rapa HOM05D001070 ORTHO05D002096 8.9e-15 83.2 49 83.7
AT2G07739 Arabidopsis thaliana HOM05D001070 ORTHO05D002096 1.2e-14 82.8 49 81.6
Nn064s42217 Nelumbo nucifera HOM05D001070 ORTHO05D002096 1.2e-14 82.8 55 76.4
Nn212s45207 Nelumbo nucifera HOM05D001070 ORTHO05D002096 1.2e-14 82.8 55 76.4
Migut.D01388 Erythranthe guttata HOM05D001070 ORTHO05D002096 1.5e-14 82.4 49 83.7
HanXRQChr11g0336631 Helianthus annuus HOM05D001070 ORTHO05D002096 2.0e-14 82.0 57 70.2
Manes.11G122808 Manihot esculenta HOM05D001070 ORTHO05D002096 3.4e-14 81.3 51 78.4
CAN.G929.2 Capsicum annuum HOM05D001070 ORTHO05D002096 5.8e-14 80.5 47 85.1
Solyc00g500043.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 5.8e-14 80.5 47 85.1
Solyc00g500084.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 5.8e-14 80.5 47 85.1
Solyc00g500126.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 5.8e-14 80.5 47 85.1
Solyc00g500278.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 5.8e-14 80.5 47 85.1
Lalb_Chr07g0191691 Lupinus albus HOM05D001070 ORTHO05D002096 7.5e-14 80.1 48 83.3
Lalb_Chr07g0191841 Lupinus albus HOM05D001070 ORTHO05D002096 7.5e-14 80.1 48 83.3
SalBow1G3373 Salvia bowleyana HOM05D001070 ORTHO05D002096 1.3e-13 79.3 49 77.6
SalBow1G6555 Salvia bowleyana HOM05D001070 ORTHO05D002096 1.3e-13 79.3 49 77.6
PSO548G0067 Papaver somniferum HOM05D001070 ORTHO05D002096 1.7e-13 79.0 49 79.6
Solyc04g045540.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 1.7e-13 79.0 47 85.1
Solyc11g021310.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 1.7e-13 79.0 47 83.0
CSS0027235 Camellia sinensis var. sinensis HOM05D001070 ORTHO05D002096 2.2e-13 78.6 49 79.6
DCAR_032544 Daucus carota HOM05D001070 ORTHO05D002096 2.2e-13 78.6 49 79.6
HanXRQChr06g0182961 Helianthus annuus HOM05D001070 ORTHO05D002096 2.9e-13 78.2 49 79.6
HanXRQChr09g0258561 Helianthus annuus HOM05D001070 ORTHO05D002096 2.9e-13 78.2 49 79.6
HanXRQChr14g0430911 Helianthus annuus HOM05D001070 ORTHO05D002096 2.9e-13 78.2 49 79.6
Nn029s41580 Nelumbo nucifera HOM05D001070 ORTHO05D002096 2.9e-13 78.2 49 79.6
Nn031s41609 Nelumbo nucifera HOM05D001070 ORTHO05D002096 2.9e-13 78.2 49 79.6
Nn304s46233 Nelumbo nucifera HOM05D001070 ORTHO05D002096 2.9e-13 78.2 49 79.6
Nn349s46479 Nelumbo nucifera HOM05D001070 ORTHO05D002096 2.9e-13 78.2 49 79.6
Oeu038907.1 Olea europaea HOM05D001070 ORTHO05D002096 2.9e-13 78.2 49 81.6
PSO541G0682 Papaver somniferum HOM05D001070 ORTHO05D002096 2.9e-13 78.2 56 73.2
CiPaw.01G098400 Carya illinoinensis HOM05D001070 ORTHO05D002096 4.9e-13 77.4 49 79.6
HanXRQChr11g0347371 Helianthus annuus HOM05D001070 ORTHO05D002096 4.9e-13 77.4 49 77.6
Medtr5g080950 Medicago truncatula HOM05D001070 ORTHO05D002096 4.9e-13 77.4 49 73.5
PSO478G1394 Papaver somniferum HOM05D001070 ORTHO05D002096 4.9e-13 77.4 49 77.6
Potri.011G073900 Populus trichocarpa HOM05D001070 ORTHO05D002096 6.4e-13 77.0 49 77.6
RcHm_v2.0_Chr7g0221181 Rosa chinensis HOM05D001070 ORTHO05D002096 1.1e-12 76.3 49 79.6
PGR081G0002 Punica granatum HOM05D001070 ORTHO05D002096 1.4e-12 75.9 49 79.6
PGR111G0057 Punica granatum HOM05D001070 ORTHO05D002096 1.4e-12 75.9 49 79.6
Solyc05g047440.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 1.4e-12 75.9 47 80.9
C03p28320 Brassica napus HOM05D001070 ORTHO05D002096 1.9e-12 75.5 49 77.6
Oeu012767.1 Olea europaea HOM05D001070 ORTHO05D002096 5.4e-12 73.9 44 84.1
Oeu015126.1 Olea europaea HOM05D001070 ORTHO05D002096 9.2e-12 73.2 49 73.5
SGA_v2.0_scaffold140G35506 Striga asiatica HOM05D001070 ORTHO05D002096 1.2e-11 72.8 49 73.5
MSTRG.27595 Avicennia marina HOM05D001070 ORTHO05D002096 2.1e-11 72.0 42 83.3
CiPaw.12G052500 Carya illinoinensis HOM05D001070 ORTHO05D002096 2.1e-11 72.0 60 63.3
Solyc11g044670.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 2.1e-11 72.0 47 78.7
Oeu054714.1 Olea europaea HOM05D001070 ORTHO05D002096 2.7e-11 71.6 49 73.5
HanXRQChr12g0376641 Helianthus annuus HOM05D001070 ORTHO05D002096 3.5e-11 71.2 49 71.4
Solyc11g021180.2 Solanum lycopersicum HOM05D001070 ORTHO05D002096 4.6e-11 70.9 45 77.8
Gohir.D06G105240 Gossypium hirsutum HOM05D001070 ORTHO05D002096 1.0e-10 69.7 57 63.2
Solyc00g500190.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 1.0e-10 69.7 38 89.5
Solyc00g500196.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 1.0e-10 69.7 38 89.5
HanXRQChr13g0416561 Helianthus annuus HOM05D001070 ORTHO05D002096 2.3e-10 68.6 62 59.7
Medtr4g006080 Medicago truncatula HOM05D001070 ORTHO05D002096 3.9e-10 67.8 49 67.3
Hund08795 Selenicereus undatus HOM05D001070 ORTHO05D002096 3.9e-10 67.8 50 68.0
Hund17849 Selenicereus undatus HOM05D001070 ORTHO05D002096 3.9e-10 67.8 50 68.0
Hund27460 Selenicereus undatus HOM05D001070 ORTHO05D002096 3.9e-10 67.8 50 68.0
Hund27646 Selenicereus undatus HOM05D001070 ORTHO05D002096 3.9e-10 67.8 50 68.0
Hund27754 Selenicereus undatus HOM05D001070 ORTHO05D002096 3.9e-10 67.8 50 68.0
Hund27829 Selenicereus undatus HOM05D001070 ORTHO05D002096 3.9e-10 67.8 50 68.0
Hund27834 Selenicereus undatus HOM05D001070 ORTHO05D002096 3.9e-10 67.8 50 68.0
Hund28436 Selenicereus undatus HOM05D001070 ORTHO05D002096 3.9e-10 67.8 50 68.0
Hund28590 Selenicereus undatus HOM05D001070 ORTHO05D002096 3.9e-10 67.8 50 68.0
Hund28611 Selenicereus undatus HOM05D001070 ORTHO05D002096 3.9e-10 67.8 50 68.0
Hund29319 Selenicereus undatus HOM05D001070 ORTHO05D002096 3.9e-10 67.8 50 68.0
Hund29401 Selenicereus undatus HOM05D001070 ORTHO05D002096 3.9e-10 67.8 50 68.0
Hund29519 Selenicereus undatus HOM05D001070 ORTHO05D002096 3.9e-10 67.8 50 68.0
Hund29746 Selenicereus undatus HOM05D001070 ORTHO05D002096 3.9e-10 67.8 50 68.0
Hund29772 Selenicereus undatus HOM05D001070 ORTHO05D002096 3.9e-10 67.8 50 68.0
Lsat_1_v5_gn_6_14501 Lactuca sativa HOM05D001070 ORTHO05D002096 5.1e-10 67.4 49 71.4
Gohir.1Z049492 Gossypium hirsutum HOM05D001070 ORTHO05D002096 8.6e-10 66.6 48 70.8
Sed0021842 Sechium edule HOM05D001070 ORTHO05D002096 8.6e-10 66.6 40 82.5
Solyc10g062235.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 1.5e-09 65.9 34 91.2
Nitab4.5_0008665g0040 Nicotiana tabacum HOM05D001070 ORTHO05D002096 1.9e-09 65.5 38 84.2
CSS0017227 Camellia sinensis var. sinensis HOM05D001070 ORTHO05D002096 3.3e-09 64.7 41 70.7
Gohir.D03G074712 Gossypium hirsutum HOM05D001070 ORTHO05D002096 3.3e-09 64.7 49 67.3
Lju5009P0T27 Lonicera japonica HOM05D001070 ORTHO05D002096 3.3e-09 64.7 49 69.4
Nn2g13236 Nelumbo nucifera HOM05D001070 ORTHO05D002096 3.3e-09 64.7 49 67.3
BolC2t10605H Brassica oleracea HOM05D001070 ORTHO05D002096 7.3e-09 63.5 34 88.2
BolSC29t60513H Brassica oleracea HOM05D001070 ORTHO05D002096 7.3e-09 63.5 34 88.2
BolSC35t60685H Brassica oleracea HOM05D001070 ORTHO05D002096 7.3e-09 63.5 34 88.2
BolSC37t60800H Brassica oleracea HOM05D001070 ORTHO05D002096 7.3e-09 63.5 34 88.2
BolSC45t60902H Brassica oleracea HOM05D001070 ORTHO05D002096 7.3e-09 63.5 34 88.2
BolSC47t61060H Brassica oleracea HOM05D001070 ORTHO05D002096 7.3e-09 63.5 34 88.2
BraSC143t45653Z Brassica rapa HOM05D001070 ORTHO05D002096 7.3e-09 63.5 34 88.2
BraSC59t46545Z Brassica rapa HOM05D001070 ORTHO05D002096 7.3e-09 63.5 34 88.2
CARHR282400 Cardamine hirsuta HOM05D001070 ORTHO05D002096 7.3e-09 63.5 34 88.2
Gorai.013G183200 Gossypium raimondii HOM05D001070 ORTHO05D002096 7.3e-09 63.5 49 67.3
TAR633G1337 Trochodendron aralioides HOM05D001070 ORTHO05D002096 7.3e-09 63.5 34 88.2
Nn5g27511 Nelumbo nucifera HOM05D001070 ORTHO05D002096 9.5e-09 63.2 44 75.0
Gohir.A09G046100 Gossypium hirsutum HOM05D001070 ORTHO05D002096 1.2e-08 62.8 48 66.7
Gohir.D13G124850 Gossypium hirsutum HOM05D001070 ORTHO05D002096 1.2e-08 62.8 49 63.3
PSO541G2875 Papaver somniferum HOM05D001070 ORTHO05D002096 1.2e-08 62.8 34 85.3
Gohir.D13G161333 Gossypium hirsutum HOM05D001070 ORTHO05D002096 2.1e-08 62.0 49 65.3
Sc25g0002030 Simmondsia chinensis HOM05D001070 ORTHO05D002096 2.1e-08 62.0 34 85.3
HanXRQChr00c0561g0575891 Helianthus annuus HOM05D001070 ORTHO05D002096 2.8e-08 61.6 34 85.3
HanXRQChr17g0569781 Helianthus annuus HOM05D001070 ORTHO05D002096 2.8e-08 61.6 34 85.3
Hund22090 Selenicereus undatus HOM05D001070 ORTHO05D002096 2.8e-08 61.6 41 70.7
Atru.chr8.922 Acer truncatum HOM05D001070 ORTHO05D002096 3.6e-08 61.2 34 85.3
Gohir.A04G057652 Gossypium hirsutum HOM05D001070 ORTHO05D002096 3.6e-08 61.2 48 62.5
EL10Ac7g17376 Beta vulgaris HOM05D001070 ORTHO05D002096 4.7e-08 60.8 34 82.4
Lalb_Chr16g0388601 Lupinus albus HOM05D001070 ORTHO05D002096 4.7e-08 60.8 33 90.9
ClCG06G008920 Citrullus lanatus HOM05D000806 ORTHO05D002324 6.2e-08 60.5 36 80.6
Aqoxy4G02031 Aquilegia oxysepala HOM05D001070 ORTHO05D002096 1.1e-07 59.7 34 82.4
Oeu046574.1 Olea europaea HOM05D001070 ORTHO05D002096 1.4e-07 59.3 41 70.7
arahy.Tifrunner.gnm1.ann1.0FQ6JR Arachis hypogaea HOM05D001070 ORTHO05D002096 1.8e-07 58.9 31 87.1
Migut.D01245 Erythranthe guttata HOM05D001070 ORTHO05D002096 1.8e-07 58.9 33 81.8
Hund01218 Selenicereus undatus HOM05D001070 ORTHO05D002096 2.4e-07 58.5 41 68.3
Hund28771 Selenicereus undatus HOM05D001070 ORTHO05D002096 2.4e-07 58.5 41 68.3
Hund29267 Selenicereus undatus HOM05D001070 ORTHO05D002096 2.4e-07 58.5 41 68.3
Hund29396 Selenicereus undatus HOM05D001070 ORTHO05D002096 2.4e-07 58.5 41 68.3
BolSC29t60552H Brassica oleracea HOM05D001070 ORTHO05D002096 3.1e-07 58.2 34 82.4
BolSC43t60809H Brassica oleracea HOM05D001070 ORTHO05D002096 3.1e-07 58.2 32 84.4
Nitab4.5_0004841g0060 Nicotiana tabacum HOM05D001070 ORTHO05D002096 3.1e-07 58.2 32 87.5
ClCG11G009270 Citrullus lanatus HOM05D001070 ORTHO05D002096 5.2e-07 57.4 32 84.4
Lsat_1_v5_gn_2_31300 Lactuca sativa HOM05D001070 ORTHO05D002096 5.2e-07 57.4 38 78.9
ClCG04G001030 Citrullus lanatus HOM05D001070 ORTHO05D002096 6.8e-07 57.0 33 81.8
Medtr2126s0020 Medicago truncatula HOM05D001070 ORTHO05D002096 6.8e-07 57.0 34 76.5
PGSC0003DMG400010649 Solanum tuberosum HOM05D001070 ORTHO05D002096 6.8e-07 57.0 32 87.5
AT2G07565 Arabidopsis thaliana HOM05D001070 ORTHO05D002096 8.9e-07 56.6 34 82.4
DCAR_011103 Daucus carota HOM05D001070 ORTHO05D002096 8.9e-07 56.6 34 85.3
Duzib256G0005 Durio zibethinus HOM05D001070 ORTHO05D002096 8.9e-07 56.6 49 61.2
Lalb_Chr00c06g0404661 Lupinus albus HOM05D001070 ORTHO05D002096 8.9e-07 56.6 33 84.8
Lalb_Chr13g0293691 Lupinus albus HOM05D001070 ORTHO05D002096 8.9e-07 56.6 33 84.8
Psat1g157760 Pisum sativum HOM05D001070 ORTHO05D002096 8.9e-07 56.6 49 53.1
PSO541G5077 Papaver somniferum HOM05D001070 ORTHO05D002096 1.2e-06 56.2 31 83.9
Psat0s2011g0040 Pisum sativum HOM05D000729 ORTHO05D001063 1.5e-06 55.8 47 53.2
arahy.Tifrunner.gnm1.ann1.13XSJR Arachis hypogaea HOM05D001070 ORTHO05D002096 2.0e-06 55.5 31 83.9
Solyc11g039900.3 Solanum lycopersicum HOM05D001070 ORTHO05D002096 7.6e-06 53.5 31 77.4
Glyma.01G114300 Glycine max HOM05D001070 ORTHO05D002096 9.9e-06 53.1 27 92.6
Gohir.A09G216580 Gossypium hirsutum HOM05D001070 ORTHO05D002096 9.9e-06 53.1 34 70.6
Sc10g0007490 Simmondsia chinensis HOM05D001070 ORTHO05D002096 9.9e-06 53.1 34 73.5


User provided reference genes

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