Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G117100 Phaseolus vulgaris HOM05D003999 ORTHO05D005219 4.8e-271 937.2 453 100.0
VMungo1309G0585 Vigna mungo HOM05D003999 ORTHO05D005219 1.4e-241 839.3 453 89.0
Glyma.04G001900 Glycine max HOM05D003999 ORTHO05D005219 2.0e-221 772.3 462 81.2
Glyma.06G001400 Glycine max HOM05D003999 ORTHO05D005219 9.8e-216 753.4 462 80.5
Ca_15280_v3 Cicer arietinum L. HOM05D003999 ORTHO05D005219 3.0e-188 662.1 471 70.1
Lj1g0014223 Lotus japonicus HOM05D003999 ORTHO05D005219 2.4e-185 652.5 467 69.8
Medtr3g100350 Medicago truncatula HOM05D003999 ORTHO05D005219 4.8e-170 601.7 469 65.0
Psat5g048320 Pisum sativum HOM05D003999 ORTHO05D005219 1.2e-168 597.0 472 63.6
Lalb_Chr11g0061221 Lupinus albus HOM05D003999 ORTHO05D005219 6.7e-164 581.3 456 64.7
arahy.Tifrunner.gnm1.ann1.K74ZDU Arachis hypogaea HOM05D003999 ORTHO05D005219 1.9e-163 579.7 471 63.5
TPR.G6349 Trifolium pratense HOM05D003999 ORTHO05D005219 1.9e-158 563.1 516 57.6
arahy.Tifrunner.gnm1.ann1.M9AABA Arachis hypogaea HOM05D003999 ORTHO05D005219 1.3e-151 540.4 480 60.0
Cfa013453 Carpinus fangiana HOM05D003999 ORTHO05D005219 3.3e-115 419.5 497 47.7
CiPaw.07G197100 Carya illinoinensis HOM05D003999 ORTHO05D005219 7.5e-115 418.3 501 47.1
Atru.chr7.755 Acer truncatum HOM05D003999 ORTHO05D005219 3.2e-110 402.9 498 47.0
Atru.chr7.776 Acer truncatum HOM05D003999 ORTHO05D005219 3.2e-110 402.9 498 47.0
Prupe.1G075400 Prunus persica HOM05D003999 ORTHO05D005219 5.7e-107 392.1 444 48.0
Duzib114G0910 Durio zibethinus HOM05D003999 ORTHO05D005219 1.7e-106 390.6 498 45.0
Dinv41175 Davidia involucrata HOM05D003999 ORTHO05D005219 1.8e-105 387.1 497 44.1
Manes.06G019800 Manihot esculenta HOM05D003999 ORTHO05D005219 7.7e-104 381.7 472 46.2
Duzib106G1697 Durio zibethinus HOM05D003999 ORTHO05D005219 5.0e-103 379.0 466 44.0
Ciclev10010423m.g Citrus clementina HOM05D003999 ORTHO05D005219 1.9e-102 377.1 494 43.9
RcHm_v2.0_Chr7g0219501 Rosa chinensis HOM05D003999 ORTHO05D005219 1.9e-102 377.1 422 48.8
Gohir.D06G185700 Gossypium hirsutum HOM05D003999 ORTHO05D005219 2.5e-102 376.7 502 43.8
Gorai.010G217300 Gossypium raimondii HOM05D003999 ORTHO05D005219 4.2e-102 375.9 502 43.8
Thecc.10G174600 Theobroma cacao HOM05D003999 ORTHO05D005219 5.5e-102 375.6 498 42.8
Gohir.A06G176100 Gossypium hirsutum HOM05D003999 ORTHO05D005219 6.1e-101 372.1 498 44.2
Sed0015737 Sechium edule HOM05D003999 ORTHO05D005219 4.0e-100 369.4 427 48.5
Sed0001699 Sechium edule HOM05D003999 ORTHO05D005219 1.5e-99 367.5 478 43.9
Actinidia38494 Actinidia chinensis HOM05D003999 ORTHO05D005219 2.8e-98 363.2 528 40.9
MD13G1241700 Malus domestica HOM05D003999 ORTHO05D005219 4.9e-98 362.5 430 47.2
COL.COLO4_08503 Corchorus olitorius HOM05D003999 ORTHO05D005219 2.0e-96 357.1 463 44.1
FAN04G0885 Fragaria x ananassa HOM05D003999 ORTHO05D005219 1.3e-95 354.4 432 46.8
FAN18G4269 Fragaria x ananassa HOM05D003999 ORTHO05D005219 2.3e-95 353.6 424 47.4
vmacro05997 Vaccinium macrocarpon HOM05D003999 ORTHO05D005219 6.6e-95 352.1 482 42.1
FAN13G0316 Fragaria x ananassa HOM05D003999 ORTHO05D005219 8.6e-95 351.7 432 46.8
MSTRG.26544 Avicennia marina HOM05D003999 ORTHO05D005219 2.5e-94 350.1 428 43.9
Gohir.D10G188000 Gossypium hirsutum HOM05D003999 ORTHO05D005219 7.3e-94 348.6 498 41.6
Hma1.2p1_1326F.1_g275830 Hydrangea macrophylla HOM05D003999 ORTHO05D005219 1.6e-93 347.4 475 43.8
Nn8g40781 Nelumbo nucifera HOM05D003999 ORTHO05D005219 2.8e-93 346.7 559 36.5
Actinidia29951 Actinidia chinensis HOM05D003999 ORTHO05D005219 4.7e-93 345.9 528 40.3
CsaV3_1G031880 Cucumis sativus L. HOM05D003999 ORTHO05D005219 1.0e-92 344.7 462 42.9
MD16G1248600 Malus domestica HOM05D003999 ORTHO05D005219 8.9e-92 341.7 475 42.9
Rhsim03G0266100 Rhododendron simsii HOM05D003999 ORTHO05D005219 1.2e-91 341.3 487 41.7
Gorai.011G210800 Gossypium raimondii HOM05D003999 ORTHO05D005219 7.5e-91 338.6 482 41.3
Cc06_g20850 Coffea canephora HOM05D003999 ORTHO05D005219 1.7e-90 337.4 433 44.6
Gohir.A10G181100 Gossypium hirsutum HOM05D003999 ORTHO05D005219 5.4e-89 332.4 498 40.4
Potri.006G075400 Populus trichocarpa HOM05D003999 ORTHO05D005219 5.4e-89 332.4 466 42.9
Sc08g0004740 Simmondsia chinensis HOM05D003999 ORTHO05D005219 5.4e-89 332.4 513 38.0
MELO3C017428.2 Cucumis melo HOM05D003999 ORTHO05D005219 2.7e-88 330.1 394 47.0
TAR625G1146 Trochodendron aralioides HOM05D003999 ORTHO05D005219 3.5e-88 329.7 496 38.3
TWI34G1954 Tripterygium wilfordii HOM05D003999 ORTHO05D005219 6.0e-88 328.9 493 42.8
Haze_22020 Corylus avellana HOM05D003999 ORTHO05D005219 1.0e-87 328.2 436 45.0
TWI63G1413 Tripterygium wilfordii HOM05D003999 ORTHO05D005219 1.0e-87 328.2 491 42.8
CiPaw.08G032500 Carya illinoinensis HOM05D003999 ORTHO05D005219 6.6e-87 325.5 465 43.9
Sabra06G0056300 Salix brachista HOM05D003999 ORTHO05D005219 1.1e-86 324.7 365 47.4
Migut.L01882 Erythranthe guttata HOM05D003999 ORTHO05D005219 4.3e-86 322.8 464 39.7
FvH4_5g27730 Fragaria vesca HOM05D003999 ORTHO05D005219 9.5e-86 321.6 432 44.9
Peaxi162Scf00670g00347 Petunia axillaris HOM05D003999 ORTHO05D005219 2.1e-85 320.5 479 40.1
Potri.018G142300 Populus trichocarpa HOM05D003999 ORTHO05D005219 2.1e-85 320.5 437 43.0
FAN08G2100 Fragaria x ananassa HOM05D003999 ORTHO05D005219 2.8e-85 320.1 432 44.7
Eucgr.C02221 Eucalyptus grandis HOM05D003999 ORTHO05D005219 1.4e-84 317.8 483 39.8
Sabra18G0116200 Salix brachista HOM05D003999 ORTHO05D005219 2.0e-83 313.9 389 45.5
ECA240G0372 Erigeron canadensis HOM05D003999 ORTHO05D005219 5.8e-83 312.4 456 39.0
Aqoxy7G02806 Aquilegia oxysepala HOM05D003999 ORTHO05D005219 1.3e-82 311.2 324 47.5
AUR62027455 Chenopodium quinoa HOM05D003999 ORTHO05D005219 6.4e-82 308.9 366 45.6
EL10Ac8g19270 Beta vulgaris HOM05D003999 ORTHO05D005219 3.2e-81 306.6 336 47.0
AUR62031249 Chenopodium quinoa HOM05D003999 ORTHO05D005219 3.9e-79 299.7 360 43.6
Hund06701 Selenicereus undatus HOM05D003999 ORTHO05D005219 8.6e-79 298.5 331 47.4
TAR383G0399 Trochodendron aralioides HOM05D003999 ORTHO05D005219 8.6e-79 298.5 512 35.5
TAR626G1281 Trochodendron aralioides HOM05D003999 ORTHO05D005219 1.6e-77 294.3 507 35.9
Sopen02g019140 Solanum pennellii HOM05D003999 ORTHO05D005219 6.2e-77 292.4 473 39.3
CAN.G79.26 Capsicum annuum HOM05D003999 ORTHO05D005219 1.4e-76 291.2 317 48.6
DCAR_020148 Daucus carota HOM05D003999 ORTHO05D005219 2.9e-74 283.5 458 39.7
DCAR_014666 Daucus carota HOM05D003999 ORTHO05D005219 2.7e-72 276.9 336 44.0
Migut.J00798 Erythranthe guttata HOM05D003999 ORTHO05D005219 3.0e-71 273.5 311 45.7
SGA_v2.0_scaffold231G43410 Striga asiatica HOM05D003999 ORTHO05D005219 3.9e-71 273.1 310 43.5
CSS0024594 Camellia sinensis var. sinensis HOM05D003999 ORTHO05D005219 6.6e-71 272.3 435 40.0
MBI13_g34042_MAGBIO Magnolia biondii HOM05D003999 ORTHO05D005219 1.1e-70 271.6 502 37.3
Nitab4.5_0001583g0100 Nicotiana tabacum HOM05D003999 ORTHO05D005219 8.1e-69 265.4 451 37.7
HanXRQChr09g0244721 Helianthus annuus HOM05D003999 ORTHO05D005219 1.4e-68 264.6 300 44.7
MBI16_g05835_MAGBIO Magnolia biondii HOM05D003999 ORTHO05D005219 1.4e-68 264.6 450 36.7
Nitab4.5_0001225g0140 Nicotiana tabacum HOM05D003999 ORTHO05D005219 1.8e-68 264.2 438 37.9
unitig_8.g4939 Utricularia gibba HOM05D003999 ORTHO05D005219 1.8e-68 264.2 447 36.5
PSO170G0656 Papaver somniferum HOM05D003999 ORTHO05D005219 4.0e-68 263.1 332 42.2
Cc00_g03720 Coffea canephora HOM05D003999 ORTHO05D005219 7.6e-67 258.8 440 38.0
THA.LOC104814650 Tarenaya hassleriana HOM05D003999 ORTHO05D005219 1.3e-66 258.1 317 43.8
Solyc02g069980.4 Solanum lycopersicum HOM05D003999 ORTHO05D005219 1.7e-66 257.7 438 37.7
Lsat_1_v5_gn_7_51121 Lactuca sativa HOM05D003999 ORTHO05D005219 2.9e-66 256.9 313 44.4
unitig_578.g16064 Utricularia gibba HOM05D003999 ORTHO05D005219 1.9e-65 254.2 451 36.6
DCAR_018034 Daucus carota HOM05D003999 ORTHO05D005219 1.3e-63 248.1 420 37.1
Haze_18974 Corylus avellana HOM05D003999 ORTHO05D005219 8.7e-63 245.4 370 37.3
Ciclev10008331m.g Citrus clementina HOM05D003999 ORTHO05D005219 6.9e-60 235.7 437 34.1
Potri.006G277400 Populus trichocarpa HOM05D003999 ORTHO05D005219 1.2e-59 235.0 337 40.7
Thecc.09G004800 Theobroma cacao HOM05D003999 ORTHO05D005219 1.5e-59 234.6 281 43.1
ATR0681G357 Amborella trichopoda HOM05D003999 ORTHO05D005219 2.9e-58 230.3 321 39.9
Haze_18980 Corylus avellana HOM05D003999 ORTHO05D005219 2.9e-58 230.3 393 35.4
Phvul.007G142700 Phaseolus vulgaris HOM05D003999 ORTHO05D005219 3.8e-58 229.9 192 64.1
CDE06G2299 Ceratophyllum demersum HOM05D003999 ORTHO05D005219 1.1e-57 228.4 399 36.6
CSS0017119 Camellia sinensis var. sinensis HOM05D003999 ORTHO05D005219 2.7e-56 223.8 411 35.8
CDE02G3353 Ceratophyllum demersum HOM05D003999 ORTHO05D005219 7.8e-56 222.2 402 36.1
Cfa020676 Carpinus fangiana HOM05D003999 ORTHO05D005219 1.9e-54 217.6 371 36.4
Os04g0425100 Oryza sativa ssp. japonica HOM05D003999 ORTHO05D005219 4.3e-54 216.5 427 33.5
Zm00001eb002000 Zea mays HOM05D003999 ORTHO05D005219 1.4e-52 211.5 427 33.7
Actinidia27131 Actinidia chinensis HOM05D003999 ORTHO05D005219 9.0e-52 208.8 372 37.9
Sp3g32620 Schrenkiella parvula HOM05D003999 ORTHO05D005219 1.5e-51 208.0 226 47.3
GSVIVG01010859001 Vitis vinifera HOM05D003999 ORTHO05D005219 5.8e-51 206.1 148 61.5
C09p14530 Brassica napus HOM05D003999 ORTHO05D005219 9.9e-51 205.3 226 46.5
ATR0626G364 Amborella trichopoda HOM05D003999 ORTHO05D005219 1.3e-50 204.9 270 41.9
AT2G19260 Arabidopsis thaliana HOM05D003999 ORTHO05D005219 2.9e-50 203.8 304 40.1
Carub.0003s3349 Capsella rubella HOM05D003999 ORTHO05D005219 2.9e-50 203.8 286 40.6
AL3G49030 Arabidopsis lyrata HOM05D003999 ORTHO05D005219 3.8e-50 203.4 286 42.3
BolC9t54356H Brassica oleracea HOM05D003999 ORTHO05D005219 3.8e-50 203.4 226 46.0
BcaB07g31614 Brassica carinata HOM05D003999 ORTHO05D005219 8.4e-50 202.2 244 43.0
BcaC04g22860 Brassica carinata HOM05D003999 ORTHO05D005219 8.4e-50 202.2 226 45.6
BcaB03g16715 Brassica carinata HOM05D003999 ORTHO05D005219 1.1e-49 201.8 287 39.7
BcaC06g36543 Brassica carinata HOM05D003999 ORTHO05D005219 2.4e-49 200.7 244 44.7
C07p03110 Brassica napus HOM05D003999 ORTHO05D005219 2.4e-49 200.7 245 44.1
BolC7t40703H Brassica oleracea HOM05D003999 ORTHO05D005219 2.4e-49 200.7 245 44.1
A07p01530 Brassica napus HOM05D003999 ORTHO05D005219 3.2e-49 200.3 226 45.6
BraA07t27954Z Brassica rapa HOM05D003999 ORTHO05D005219 3.2e-49 200.3 226 45.6
CiPaw.15G150400 Carya illinoinensis HOM05D003999 ORTHO05D005219 3.2e-49 200.3 384 32.3
Sabra06G0215100 Salix brachista HOM05D003999 ORTHO05D005219 1.2e-48 198.4 371 34.5
Zm00001eb274650 Zea mays HOM05D003999 ORTHO05D005219 3.5e-48 196.8 390 32.6
Thhalv10022602m.g Eutrema salsugineum HOM05D003999 ORTHO05D005219 4.6e-48 196.4 320 37.5
Atru.chr7.2670 Acer truncatum HOM05D003999 ORTHO05D005219 3.9e-47 193.4 203 44.8
SalBow5G4070 Salvia bowleyana HOM05D003999 ORTHO05D005219 1.1e-46 191.8 483 32.3
ECA234G1030 Erigeron canadensis HOM05D003999 ORTHO05D005219 1.2e-43 181.8 171 49.7
CARHR109720 Cardamine hirsuta HOM05D003999 ORTHO05D005219 2.0e-43 181.0 201 46.3
PGSC0003DMG400021118 Solanum tuberosum HOM05D003999 ORTHO05D005219 2.2e-42 177.6 437 32.5
Aa31LG8G16300 Aethionema arabicum HOM05D003999 ORTHO05D005219 3.9e-39 166.8 262 37.0
Oeu064556.1 Olea europaea HOM05D003999 ORTHO05D005219 3.3e-38 163.7 313 33.2
ClCG06G013610 Citrullus lanatus HOM05D003999 ORTHO05D005219 2.0e-35 154.5 108 64.8
MSTRG.10442 Avicennia marina HOM05D003999 ORTHO05D005219 7.6e-35 152.5 112 59.8
SEGI_29375 Sequoiadendron giganteum HOM05D003999 ORTHO05D005219 4.9e-34 149.8 288 34.0
SMO117G0282 Selaginella moellendorffii HOM05D003999 ORTHO05D005219 5.5e-33 146.4 295 33.9
HPP92_010790 Vanilla planifolia HOM05D003999 ORTHO05D005219 1.8e-31 141.4 368 31.5
Mapoly0046s0104 Marchantia polymorpha HOM05D003999 ORTHO05D005219 1.1e-28 132.1 269 32.7
MBI16_g10833_MAGBIO Magnolia biondii HOM05D003999 ORTHO05D005219 2.4e-28 131.0 252 35.7
MSTRG.10441 Avicennia marina HOM05D003999 ORTHO05D005219 9.0e-28 129.0 311 32.5
PGR044G2313 Punica granatum HOM05D003999 ORTHO05D005219 1.6e-24 118.2 290 32.1
SEGI_05476 Sequoiadendron giganteum HOM05D003999 ORTHO05D005219 5.1e-23 113.2 395 26.8
Prupe.5G240400 Prunus persica HOM05D003999 ORTHO05D005219 2.0e-22 111.3 151 41.7
GSVIVG01035550001 Vitis vinifera HOM05D003999 ORTHO05D005219 3.7e-21 107.1 83 53.0
RcHm_v2.0_Chr7g0177591 Rosa chinensis HOM05D003999 ORTHO05D005219 6.3e-21 106.3 173 36.4
Phvul.009G117400 Phaseolus vulgaris HOM05D003999 ORTHO05D005219 2.6e-19 100.9 62 75.8
FvH4_5g18011 Fragaria vesca HOM05D003999 ORTHO05D005219 7.7e-19 99.4 153 35.9
FAN18G0538 Fragaria x ananassa HOM05D003999 ORTHO05D005219 1.3e-18 98.6 153 35.9
FAN13G0118 Fragaria x ananassa HOM05D003999 ORTHO05D005219 4.2e-17 93.6 151 35.1
MD06G1235600 Malus domestica HOM05D003999 ORTHO05D005219 5.5e-17 93.2 156 35.9
SEGI_17596 Sequoiadendron giganteum HOM05D003999 ORTHO05D005219 1.4e-15 88.6 198 28.8
Cfa020674 Carpinus fangiana HOM05D003999 ORTHO05D005219 3.0e-15 87.4 58 60.3
Manes.03G002401 Manihot esculenta HOM05D003999 ORTHO05D005219 5.7e-14 83.2 130 36.9
BraA09t36876Z Brassica rapa HOM05D003999 ORTHO05D005219 1.1e-09 68.9 71 47.9
Carub.0003s3352 Capsella rubella HOM05D003999 ORTHO05D005219 3.6e-08 63.9 76 42.1
Phvul.004G017600 Phaseolus vulgaris HOM05D003353 ORTHO05D003751 1.4e-07 62.0 81 37.0
A09p12320 Brassica napus HOM05D003999 ORTHO05D005219 2.3e-07 61.2 52 50.0
arahy.Tifrunner.gnm1.ann1.S45US4 Arachis hypogaea HOM05D003353 ORTHO05D003751 1.1e-06 58.9 99 33.3
Prupe.3G283100 Prunus persica HOM05D003353 ORTHO05D003751 2.0e-06 58.2 73 34.2
VMungo0464G0152 Vigna mungo HOM05D003353 ORTHO05D003751 2.0e-06 58.2 93 34.4
Potri.005G183700 Populus trichocarpa HOM05D004258 ORTHO05D005163 2.6e-06 57.8 120 26.7
A07p28070 Brassica napus HOM05D004258 ORTHO05D005163 3.3e-06 57.4 79 34.2
BraA07t30452Z Brassica rapa HOM05D004258 ORTHO05D005163 3.3e-06 57.4 79 34.2
Oeu047167.1 Olea europaea HOM05D004258 ORTHO05D005163 4.4e-06 57.0 50 42.0
AL2G37430 Arabidopsis lyrata HOM05D004258 ORTHO05D005163 5.7e-06 56.6 48 43.8
AT1G77250 Arabidopsis thaliana HOM05D004258 ORTHO05D005163 5.7e-06 56.6 55 41.8
MD09G1035200 Malus domestica HOM05D003353 ORTHO05D003751 7.4e-06 56.2 79 32.9
Mapoly0064s0056 Marchantia polymorpha HOM05D003353 ORTHO05D003751 7.4e-06 56.2 58 43.1
A06p09270 Brassica napus HOM05D004258 ORTHO05D005163 9.7e-06 55.8 79 34.2


User provided reference genes

Program Settings