Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G073700 Phaseolus vulgaris HOM05D005471 ORTHO05D006170 7.0e-226 786.9 395 100.0
Glyma.06G048400 Glycine max HOM05D005471 ORTHO05D006170 1.8e-213 745.7 395 94.7
Medtr3g103350 Medicago truncatula HOM05D005471 ORTHO05D006170 5.2e-197 691.0 395 87.6
TPR.G30210 Trifolium pratense HOM05D005471 ORTHO05D006170 4.1e-194 681.4 397 87.2
Lj1g0028245 Lotus japonicus HOM05D005471 ORTHO05D006170 3.5e-193 678.3 395 86.1
Lalb_Chr11g0063001 Lupinus albus HOM05D005471 ORTHO05D006170 8.6e-192 673.7 395 86.1
Lalb_Chr08g0245201 Lupinus albus HOM05D005471 ORTHO05D006170 9.5e-191 670.2 395 85.6
VMungo1309G2773 Vigna mungo HOM05D005471 ORTHO05D006170 5.8e-188 661.0 397 86.4
Psat5g045040 Pisum sativum HOM05D005471 ORTHO05D006170 1.6e-185 652.9 395 83.5
arahy.Tifrunner.gnm1.ann1.F72CPE Arachis hypogaea HOM05D005471 ORTHO05D006170 7.3e-183 644.0 396 82.6
arahy.Tifrunner.gnm1.ann1.P8GEK4 Arachis hypogaea HOM05D005471 ORTHO05D006170 3.1e-181 638.6 422 77.5
Glyma.04G047500 Glycine max HOM05D005471 ORTHO05D006170 8.3e-179 630.6 401 82.3
MD08G1078900 Malus domestica HOM05D005471 ORTHO05D006170 3.0e-176 622.1 397 78.3
MD15G1065900 Malus domestica HOM05D005471 ORTHO05D006170 9.5e-175 617.1 397 77.6
GSVIVG01009307001 Vitis vinifera HOM05D005471 ORTHO05D006170 1.2e-174 616.7 397 76.6
Thecc.08G085200 Theobroma cacao HOM05D005471 ORTHO05D006170 8.1e-174 614.0 395 77.2
Ca_15890_v3 Cicer arietinum L. HOM05D005471 ORTHO05D006170 2.4e-173 612.5 400 80.2
Cfa013748 Carpinus fangiana HOM05D005471 ORTHO05D006170 3.1e-173 612.1 411 76.2
Gohir.D06G022300 Gossypium hirsutum HOM05D005471 ORTHO05D006170 3.1e-173 612.1 395 77.5
Gorai.010G026900 Gossypium raimondii HOM05D005471 ORTHO05D006170 3.1e-173 612.1 395 77.5
Manes.18G048900 Manihot esculenta HOM05D005471 ORTHO05D006170 2.0e-172 609.4 395 75.7
Prupe.1G419800 Prunus persica HOM05D005471 ORTHO05D006170 2.0e-172 609.4 387 78.3
Gohir.A06G025200 Gossypium hirsutum HOM05D005471 ORTHO05D006170 2.9e-171 605.5 395 76.7
Atru.chr13.864 Acer truncatum HOM05D005471 ORTHO05D006170 2.4e-170 602.4 387 76.0
Ciclev10001411m.g Citrus clementina HOM05D005471 ORTHO05D006170 7.1e-170 600.9 395 75.2
Dinv44934 Davidia involucrata HOM05D005471 ORTHO05D006170 9.2e-170 600.5 394 75.1
FvH4_2g32730 Fragaria vesca HOM05D005471 ORTHO05D006170 9.2e-170 600.5 395 76.2
MELO3C010789.2 Cucumis melo HOM05D005471 ORTHO05D006170 3.5e-169 598.6 395 74.7
FAN20G2694 Fragaria x ananassa HOM05D005471 ORTHO05D006170 1.7e-168 596.3 398 75.9
COL.COLO4_28470 Corchorus olitorius HOM05D005471 ORTHO05D006170 6.6e-168 594.3 389 77.1
Hma1.2p1_1170F.1_g263420 Hydrangea macrophylla HOM05D005471 ORTHO05D006170 1.9e-167 592.8 402 74.6
CiPaw.07G172600 Carya illinoinensis HOM05D005471 ORTHO05D006170 7.3e-167 590.9 412 74.0
FAN15G0642 Fragaria x ananassa HOM05D005471 ORTHO05D006170 1.6e-166 589.7 398 74.9
CsaV3_2G025960 Cucumis sativus L. HOM05D005471 ORTHO05D006170 3.6e-166 588.6 395 73.7
FAN27G0342 Fragaria x ananassa HOM05D005471 ORTHO05D006170 1.1e-165 587.0 412 73.3
RcHm_v2.0_Chr6g0309951 Rosa chinensis HOM05D005471 ORTHO05D006170 2.0e-164 582.8 396 73.7
FAN24G0217 Fragaria x ananassa HOM05D005471 ORTHO05D006170 5.8e-164 581.3 390 75.4
Nn5g30656 Nelumbo nucifera HOM05D005471 ORTHO05D006170 2.2e-163 579.3 396 73.5
Manes.05G183100 Manihot esculenta HOM05D005471 ORTHO05D006170 4.9e-163 578.2 395 73.7
Sed0019663 Sechium edule HOM05D005471 ORTHO05D006170 6.4e-163 577.8 387 74.2
CSS0040686 Camellia sinensis var. sinensis HOM05D005471 ORTHO05D006170 9.3e-162 573.9 396 73.0
ClCG08G016670 Citrullus lanatus HOM05D005471 ORTHO05D006170 9.3e-162 573.9 391 73.7
Gorai.009G221700 Gossypium raimondii HOM05D005471 ORTHO05D006170 9.3e-162 573.9 395 74.2
Sabra14G0008300 Salix brachista HOM05D005471 ORTHO05D006170 2.1e-161 572.8 422 69.7
Sc02g0008090 Simmondsia chinensis HOM05D005471 ORTHO05D006170 2.1e-161 572.8 397 71.8
Gohir.D05G215000 Gossypium hirsutum HOM05D005471 ORTHO05D006170 4.6e-161 571.6 395 73.9
CiPaw.08G051800 Carya illinoinensis HOM05D005471 ORTHO05D006170 5.1e-160 568.2 411 72.3
TWI12G0997 Tripterygium wilfordii HOM05D005471 ORTHO05D006170 1.9e-159 566.2 398 72.4
Dinv39207 Davidia involucrata HOM05D005471 ORTHO05D006170 2.5e-159 565.8 396 71.0
Eucgr.F02230 Eucalyptus grandis HOM05D005471 ORTHO05D006170 1.6e-158 563.1 396 70.2
CSS0014765 Camellia sinensis var. sinensis HOM05D005471 ORTHO05D006170 1.5e-156 556.6 397 71.0
Ah.05g166980 Amaranthus hybridus HOM05D005471 ORTHO05D006170 2.6e-156 555.8 402 70.4
CSS0038926 Camellia sinensis var. sinensis HOM05D005471 ORTHO05D006170 9.9e-156 553.9 424 67.5
Aqoxy6G02473 Aquilegia oxysepala HOM05D005471 ORTHO05D006170 6.4e-155 551.2 399 70.7
Duzib093G1789 Durio zibethinus HOM05D005471 ORTHO05D006170 3.2e-154 548.9 395 70.4
MBI16_g27035_MAGBIO Magnolia biondii HOM05D005471 ORTHO05D006170 2.3e-152 542.7 440 64.3
ECA232G3342 Erigeron canadensis HOM05D005471 ORTHO05D006170 1.1e-151 540.4 397 69.5
SGA_v2.0_scaffold74G24542 Striga asiatica HOM05D005471 ORTHO05D006170 1.5e-151 540.0 401 69.1
Migut.C00408 Erythranthe guttata HOM05D005471 ORTHO05D006170 1.9e-151 539.7 401 67.8
CARHR283850 Cardamine hirsuta HOM05D005471 ORTHO05D006170 5.6e-151 538.1 394 69.0
HanXRQChr09g0254061 Helianthus annuus HOM05D005471 ORTHO05D006170 3.7e-150 535.4 397 69.0
Sopen04g031200 Solanum pennellii HOM05D005471 ORTHO05D006170 4.8e-150 535.0 396 69.4
Solyc04g077560.3 Solanum lycopersicum HOM05D005471 ORTHO05D006170 8.1e-150 534.3 396 69.2
PGSC0003DMG400004915 Solanum tuberosum HOM05D005471 ORTHO05D006170 1.8e-149 533.1 396 69.2
Sp2g05030 Schrenkiella parvula HOM05D005471 ORTHO05D006170 3.1e-149 532.3 394 68.3
Cc10_g07570 Coffea canephora HOM05D005471 ORTHO05D006170 4.0e-149 531.9 389 67.4
HanXRQChr15g0493081 Helianthus annuus HOM05D005471 ORTHO05D006170 2.6e-148 529.3 399 67.4
Gohir.D06G026900 Gossypium hirsutum HOM05D005471 ORTHO05D006170 3.4e-148 528.9 356 76.7
AT1G59520 Arabidopsis thaliana HOM05D005471 ORTHO05D006170 5.8e-148 528.1 394 68.5
Carub.0002s0591 Capsella rubella HOM05D005471 ORTHO05D006170 9.9e-148 527.3 394 67.8
Rhsim06G0064300 Rhododendron simsii HOM05D005471 ORTHO05D006170 1.3e-147 526.9 387 69.5
THA.LOC104819922 Tarenaya hassleriana HOM05D005471 ORTHO05D006170 1.3e-147 526.9 397 66.5
BcaC09g49476 Brassica carinata HOM05D005471 ORTHO05D006170 2.2e-147 526.2 394 67.3
EL10Ac1g02354 Beta vulgaris HOM05D005471 ORTHO05D006170 3.5e-145 518.8 395 67.6
MSTRG.25028 Avicennia marina HOM05D005471 ORTHO05D006170 7.9e-145 517.7 398 66.8
CDE02G4131 Ceratophyllum demersum HOM05D005471 ORTHO05D006170 2.3e-144 516.2 397 66.8
A01p28660 Brassica napus HOM05D005471 ORTHO05D006170 5.1e-144 515.0 387 67.4
Gohir.A05G211700 Gossypium hirsutum HOM05D005471 ORTHO05D006170 5.1e-144 515.0 395 68.4
C01p36310 Brassica napus HOM05D005471 ORTHO05D006170 8.7e-144 514.2 387 67.2
BolC1t03588H Brassica oleracea HOM05D005471 ORTHO05D006170 9.6e-143 510.8 394 66.5
BraA01t03038Z Brassica rapa HOM05D005471 ORTHO05D006170 1.3e-142 510.4 394 66.5
PSO017G6379 Papaver somniferum HOM05D005471 ORTHO05D006170 1.6e-142 510.0 390 66.9
PSO541G0412 Papaver somniferum HOM05D005471 ORTHO05D006170 1.5e-140 503.4 396 66.7
PSO675G5405 Papaver somniferum HOM05D005471 ORTHO05D006170 2.0e-140 503.1 399 65.7
ATR0739G016 Amborella trichopoda HOM05D005471 ORTHO05D006170 2.2e-139 499.6 386 65.3
PSO170G6612 Papaver somniferum HOM05D005471 ORTHO05D006170 2.9e-139 499.2 390 65.9
unitig_37.g13113 Utricularia gibba HOM05D005471 ORTHO05D006170 1.1e-138 497.3 405 63.7
Thhalv10023553m.g Eutrema salsugineum HOM05D005471 ORTHO05D006170 1.5e-135 486.9 396 62.6
BcaC09g49477 Brassica carinata HOM05D005471 ORTHO05D006170 1.9e-135 486.5 387 65.6
PGR031G3068 Punica granatum HOM05D005471 ORTHO05D006170 1.9e-135 486.5 396 63.9
Aa31LG2G10610 Aethionema arabicum HOM05D005471 ORTHO05D006170 2.5e-130 469.5 412 60.7
HPP92_007709 Vanilla planifolia HOM05D005471 ORTHO05D006170 1.2e-129 467.2 391 62.7
Nitab4.5_0001426g0050 Nicotiana tabacum HOM05D005471 ORTHO05D006170 6.1e-129 464.9 432 59.3
TAR625G0189 Trochodendron aralioides HOM05D005471 ORTHO05D006170 3.4e-124 449.1 307 73.9
Os10g0102900 Oryza sativa ssp. japonica HOM05D005471 ORTHO05D006170 2.2e-123 446.4 389 60.2
Os07g0248800 Oryza sativa ssp. japonica HOM05D005471 ORTHO05D006170 6.5e-123 444.9 389 59.9
Os04g0183100 Oryza sativa ssp. japonica HOM05D005471 ORTHO05D006170 1.1e-122 444.1 388 60.1
Lj4A753G30 Lonicera japonica HOM05D005471 ORTHO05D006170 1.2e-121 440.7 375 61.6
DCAR_019346 Daucus carota HOM05D005471 ORTHO05D006170 4.7e-121 438.7 393 58.8
Lsat_1_v5_gn_1_56140 Lactuca sativa HOM05D001400 ORTHO05D001795 4.4e-119 432.2 386 59.8
Nitab4.5_0002796g0080 Nicotiana tabacum HOM05D005471 ORTHO05D006170 2.2e-118 429.9 415 58.8
AUR62035006 Chenopodium quinoa HOM05D005471 ORTHO05D006170 3.1e-117 426.0 399 58.9
BcaB04g20211 Brassica carinata HOM05D005471 ORTHO05D006170 1.5e-116 423.7 394 57.6
Zm00001eb025640 Zea mays HOM05D005471 ORTHO05D006170 1.7e-115 420.2 390 56.7
Lsat_1_v5_gn_2_90520 Lactuca sativa HOM05D005471 ORTHO05D006170 1.4e-112 410.6 396 59.3
Potri.014G013500 Populus trichocarpa HOM05D005471 ORTHO05D006170 6.7e-112 408.3 269 74.0
Peaxi162Scf00340g00069 Petunia axillaris HOM05D005471 ORTHO05D006170 3.5e-108 396.0 444 52.0
QL12p038448 Quercus lobata HOM05D005471 ORTHO05D006170 1.4e-101 374.0 307 62.5
Nitab4.5_0006888g0020 Nicotiana tabacum HOM05D005471 ORTHO05D006170 2.7e-100 369.8 426 51.4
Cpa.g.sc142.57 Carica papaya HOM05D005471 ORTHO05D006170 5.5e-98 362.1 304 63.2
Mapoly0067s0099 Marchantia polymorpha HOM05D005471 ORTHO05D006170 4.8e-94 349.0 399 50.9
Pp3c17_20680 Physcomitrium patens HOM05D005471 ORTHO05D006170 4.0e-88 329.3 388 48.2
AagrBONN_evm.TU.Sc2ySwM_368.1412 Anthoceros agrestis HOM05D005471 ORTHO05D006170 1.2e-87 327.8 391 46.3
SMO117G0302 Selaginella moellendorffii HOM05D005471 ORTHO05D006170 5.6e-82 308.9 380 45.0
vmacro21421 Vaccinium macrocarpon HOM05D005471 ORTHO05D006170 1.0e-80 304.7 275 58.2
CBR_g49495 Chara braunii HOM05D005471 ORTHO05D006170 1.1e-74 284.6 418 41.4
DCAR_020058 Daucus carota HOM05D005471 ORTHO05D006170 2.5e-74 283.5 236 59.7
Psat5g037200 Pisum sativum HOM05D005471 ORTHO05D006170 3.9e-67 259.6 155 80.0
Haze_22399 Corylus avellana HOM05D005471 ORTHO05D006170 2.8e-65 253.4 339 46.6
Haze_22407 Corylus avellana HOM05D005471 ORTHO05D006170 1.3e-62 244.6 353 44.8
AUR62037460 Chenopodium quinoa HOM05D005471 ORTHO05D006170 3.7e-62 243.0 247 51.0
vmacro21420 Vaccinium macrocarpon HOM05D005471 ORTHO05D006170 1.7e-51 207.6 144 75.0
Gohir.D04G027975 Gossypium hirsutum HOM05D005471 ORTHO05D006170 9.9e-39 165.2 109 76.1
Gorai.012G030800 Gossypium raimondii HOM05D005471 ORTHO05D006170 2.9e-38 163.7 109 75.2
Gohir.D12G192766 Gossypium hirsutum HOM05D005471 ORTHO05D006170 4.9e-38 162.9 109 76.1
Gohir.A12G016250 Gossypium hirsutum HOM05D005471 ORTHO05D006170 3.5e-36 156.8 109 73.4
Phvul.009G072300 Phaseolus vulgaris HOM05D005471 ORTHO05D000997 5.1e-35 152.9 79 94.9
QL12p038454 Quercus lobata HOM05D005471 ORTHO05D006170 1.8e-32 144.4 116 68.1
Hund05280 Selenicereus undatus HOM05D005471 ORTHO05D006170 1.7e-30 137.9 99 64.6
SHI08425 Sapria himalayana HOM05D005471 ORTHO05D006170 5.5e-29 132.9 125 52.8
Cpa.g.sc142.58 Carica papaya HOM05D005471 ORTHO05D006170 2.7e-28 130.6 87 77.0
Peaxi162Scf00448g00027 Petunia axillaris HOM05D005471 ORTHO05D006170 3.3e-26 123.6 124 58.1
DCAR_020059 Daucus carota HOM05D005471 ORTHO05D006170 4.0e-24 116.7 96 67.7
Gorai.001G227100 Gossypium raimondii HOM05D005471 ORTHO05D006170 1.5e-18 98.2 67 74.6
Phvul.009G072333 Phaseolus vulgaris HOM05D005471 ORTHO05D006170 4.8e-17 93.2 58 81.0
Actinidia31832 Actinidia chinensis HOM05D006494 ORTHO05D007787 1.0e-14 85.5 60 65.0
Cre07.g320250 Chlamydomonas reinhardtii HOM05D005471 ORTHO05D006170 1.7e-14 84.7 332 25.9
SEGI_08278 Sequoiadendron giganteum HOM05D005471 ORTHO05D006170 1.7e-14 84.7 94 44.7
CAN.G213.23 Capsicum annuum HOM05D005471 ORTHO05D006170 7.9e-12 75.9 104 41.3
SEGI_29276 Sequoiadendron giganteum HOM05D005471 ORTHO05D006170 2.3e-11 74.3 81 51.9
Gohir.D11G128350 Gossypium hirsutum HOM05D005471 ORTHO05D006170 5.7e-10 69.7 50 68.0


User provided reference genes

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