Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G026700 Phaseolus vulgaris HOM05D003898 ORTHO05D004642 9.3e-184 646.7 326 100.0
VMungo1309G1855 Vigna mungo HOM05D003898 ORTHO05D004642 6.2e-172 607.4 326 93.9
Glyma.06G107500 Glycine max HOM05D003898 ORTHO05D004642 5.1e-158 561.2 327 87.5
Glyma.04G254600 Glycine max HOM05D003898 ORTHO05D004642 3.1e-155 552.0 327 87.8
Ca_02530_v3 Cicer arietinum L. HOM05D003898 ORTHO05D004642 9.1e-147 523.9 322 81.7
Lj1g0002951 Lotus japonicus HOM05D003898 ORTHO05D004642 1.7e-145 519.6 322 81.7
TPR.G26798 Trifolium pratense HOM05D003898 ORTHO05D004642 2.5e-144 515.8 326 80.1
Lalb_Chr08g0241771 Lupinus albus HOM05D003898 ORTHO05D004642 4.2e-144 515.0 325 79.4
Psat5g107440 Pisum sativum HOM05D003898 ORTHO05D004642 7.2e-144 514.2 325 79.7
Lalb_Chr11g0065591 Lupinus albus HOM05D003898 ORTHO05D004642 1.2e-143 513.5 324 79.6
Medtr4g112080 Medicago truncatula HOM05D003898 ORTHO05D004642 1.1e-141 506.9 316 80.4
TPR.G32957 Trifolium pratense HOM05D003898 ORTHO05D004642 1.4e-139 500.0 326 77.9
Medtr3g073550 Medicago truncatula HOM05D003898 ORTHO05D004642 9.7e-133 477.2 326 75.8
arahy.Tifrunner.gnm1.ann1.K1QIEY Arachis hypogaea HOM05D003898 ORTHO05D004642 8.0e-127 457.6 370 66.8
CiPaw.06G023700 Carya illinoinensis HOM05D003898 ORTHO05D004642 3.0e-126 455.7 323 69.3
Cpa.g.sc49.114 Carica papaya HOM05D003898 ORTHO05D004642 5.2e-126 454.9 326 69.0
QL12p035494 Quercus lobata HOM05D003898 ORTHO05D004642 5.2e-126 454.9 323 68.4
Prupe.1G507900 Prunus persica HOM05D003898 ORTHO05D004642 1.3e-124 450.3 322 68.3
RcHm_v2.0_Chr7g0240421 Rosa chinensis HOM05D003898 ORTHO05D004642 4.8e-124 448.4 322 67.7
CiPaw.05G230800 Carya illinoinensis HOM05D003898 ORTHO05D004642 1.4e-123 446.8 323 67.8
CSS0048138 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 2.0e-122 443.0 321 68.8
MD08G1174000 Malus domestica HOM05D003898 ORTHO05D004642 5.9e-122 441.4 323 67.5
arahy.Tifrunner.gnm1.ann1.PF76WK Arachis hypogaea HOM05D003898 ORTHO05D004642 1.0e-121 440.7 275 80.7
arahy.Tifrunner.gnm1.ann1.HG05DD Arachis hypogaea HOM05D003898 ORTHO05D004642 8.6e-121 437.6 275 79.6
Manes.02G157700 Manihot esculenta HOM05D003898 ORTHO05D004642 1.1e-120 437.2 321 67.0
arahy.Tifrunner.gnm1.ann1.Z23D3B Arachis hypogaea HOM05D003898 ORTHO05D004642 2.5e-120 436.0 284 78.5
CSS0037064 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 2.5e-120 436.0 322 66.8
RcHm_v2.0_Chr1g0340891 Rosa chinensis HOM05D003898 ORTHO05D004642 3.2e-120 435.6 322 66.1
FvH4_5g38420 Fragaria vesca HOM05D003898 ORTHO05D004642 4.2e-120 435.3 315 67.9
TAR625G0437 Trochodendron aralioides HOM05D003898 ORTHO05D004642 1.2e-119 433.7 324 66.0
FvH4_7g08221 Fragaria vesca HOM05D003898 ORTHO05D004642 1.6e-119 433.3 312 67.9
Dinv13069 Davidia involucrata HOM05D003898 ORTHO05D004642 6.1e-119 431.4 325 66.2
vmacro04776 Vaccinium macrocarpon HOM05D003898 ORTHO05D004642 6.1e-119 431.4 327 65.7
Potri.002G090500 Populus trichocarpa HOM05D003898 ORTHO05D004642 1.4e-118 430.3 321 65.7
Nitab4.5_0000425g0260 Nicotiana tabacum HOM05D003898 ORTHO05D004642 3.4e-117 425.6 323 65.3
COL.COLO4_16517 Corchorus olitorius HOM05D003898 ORTHO05D004642 7.5e-117 424.5 311 67.5
Thecc.08G115200 Theobroma cacao HOM05D003898 ORTHO05D004642 1.3e-116 423.7 311 66.6
CANSAT25G0948 Cannabis sativa HOM05D003898 ORTHO05D004642 1.7e-116 423.3 320 66.2
Potri.005G170600 Populus trichocarpa HOM05D003898 ORTHO05D004642 9.2e-115 417.5 321 64.5
Sc16g0001430 Simmondsia chinensis HOM05D003898 ORTHO05D004642 1.2e-114 417.2 322 63.7
Duzib093G1469 Durio zibethinus HOM05D003898 ORTHO05D004642 2.7e-114 416.0 311 66.6
Ciclev10005436m.g Citrus clementina HOM05D003898 ORTHO05D004642 3.5e-114 415.6 308 67.5
FAN13G1941 Fragaria x ananassa HOM05D003898 ORTHO05D004642 4.5e-114 415.2 348 62.4
Rhsim07G0198900 Rhododendron simsii HOM05D003898 ORTHO05D004642 4.5e-114 415.2 332 63.9
PGR044G1262 Punica granatum HOM05D003898 ORTHO05D004642 7.8e-114 414.5 307 67.8
Haze_00543 Corylus avellana HOM05D003898 ORTHO05D004642 1.3e-113 413.7 349 61.9
HanXRQChr05g0162311 Helianthus annuus HOM05D003898 ORTHO05D004642 1.7e-113 413.3 323 64.4
Sabra02G0071500 Salix brachista HOM05D003898 ORTHO05D004642 3.8e-113 412.1 340 62.4
GSVIVG01008958001 Vitis vinifera HOM05D003898 ORTHO05D004642 5.0e-113 411.8 322 64.3
Aqoxy2G00480 Aquilegia oxysepala HOM05D003898 ORTHO05D004642 8.6e-113 411.0 321 62.0
Gorai.002G220000 Gossypium raimondii HOM05D003898 ORTHO05D004642 5.6e-112 408.3 313 66.8
Solyc12g056840.2 Solanum lycopersicum HOM05D003898 ORTHO05D004642 5.6e-112 408.3 309 65.4
HanXRQChr01g0001161 Helianthus annuus HOM05D003898 ORTHO05D004642 7.3e-112 407.9 326 63.5
Sopen12g029520 Solanum pennellii HOM05D003898 ORTHO05D004642 9.5e-112 407.5 309 65.4
SGA_v2.0_scaffold11G05890 Striga asiatica HOM05D003898 ORTHO05D004642 9.5e-112 407.5 320 64.4
ECA246G0783 Erigeron canadensis HOM05D003898 ORTHO05D004642 1.2e-111 407.1 315 64.8
PGSC0003DMG401016958 Solanum tuberosum HOM05D003898 ORTHO05D004642 1.2e-111 407.1 310 64.8
MSTRG.24959 Avicennia marina HOM05D003898 ORTHO05D004642 1.6e-111 406.8 320 63.1
Gohir.D01G182400 Gossypium hirsutum HOM05D003898 ORTHO05D004642 1.6e-111 406.8 313 66.5
Peaxi162Scf00160g01643 Petunia axillaris HOM05D003898 ORTHO05D004642 2.1e-111 406.4 322 63.0
EL10Ac6g15432 Beta vulgaris HOM05D003898 ORTHO05D004642 8.0e-111 404.4 311 64.3
Actinidia33168 Actinidia chinensis HOM05D003898 ORTHO05D004642 1.0e-110 404.1 322 64.3
Gohir.A01G187300 Gossypium hirsutum HOM05D003898 ORTHO05D004642 1.0e-110 404.1 307 67.1
PSO210G6710 Papaver somniferum HOM05D003898 ORTHO05D004642 1.4e-110 403.7 326 61.7
PSO447G0107 Papaver somniferum HOM05D003898 ORTHO05D004642 5.2e-110 401.7 326 61.0
TWI12G0005 Tripterygium wilfordii HOM05D003898 ORTHO05D004642 8.9e-110 401.0 322 63.0
MELO3C011378.2 Cucumis melo HOM05D003898 ORTHO05D004642 1.2e-109 400.6 317 61.2
Sed0026073 Sechium edule HOM05D003898 ORTHO05D004642 1.2e-109 400.6 316 61.4
FAN08G2468 Fragaria x ananassa HOM05D003898 ORTHO05D004642 1.5e-109 400.2 336 61.9
CDE10G0849 Ceratophyllum demersum HOM05D003898 ORTHO05D004642 2.6e-109 399.4 321 63.6
CAN.G47.19 Capsicum annuum HOM05D003898 ORTHO05D004642 4.4e-109 398.7 345 59.4
ClCG08G010840 Citrullus lanatus HOM05D003898 ORTHO05D004642 1.3e-108 397.1 324 60.2
DCAR_028260 Daucus carota HOM05D003898 ORTHO05D004642 1.3e-108 397.1 310 63.9
CsaV3_6G035700 Cucumis sativus L. HOM05D003898 ORTHO05D004642 2.9e-108 396.0 316 61.7
Migut.C00215 Erythranthe guttata HOM05D003898 ORTHO05D004642 3.7e-108 395.6 320 61.9
THA.LOC104813137 Tarenaya hassleriana HOM05D003898 ORTHO05D004642 6.4e-108 394.8 318 63.5
Lj4C109T16 Lonicera japonica HOM05D003898 ORTHO05D004642 1.4e-107 393.7 349 59.6
Cfa015947 Carpinus fangiana HOM05D003898 ORTHO05D004642 2.4e-107 392.9 273 70.0
Sopen04g028670 Solanum pennellii HOM05D003898 ORTHO05D004642 7.0e-107 391.3 321 60.1
Lsat_1_v5_gn_9_70200 Lactuca sativa HOM05D003898 ORTHO05D004642 1.2e-106 390.6 306 65.4
AUR62019012 Chenopodium quinoa HOM05D003898 ORTHO05D004642 2.7e-106 389.4 321 63.2
FAN01G1002 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.7e-105 386.7 323 62.2
Nitab4.5_0006745g0040 Nicotiana tabacum HOM05D003898 ORTHO05D004642 1.7e-105 386.7 390 53.6
CANSAT01G0632 Cannabis sativa HOM05D003898 ORTHO05D004642 5.0e-105 385.2 319 63.3
Carub.0001s1201 Capsella rubella HOM05D003898 ORTHO05D004642 5.0e-105 385.2 311 61.7
CAN.G617.2 Capsicum annuum HOM05D003898 ORTHO05D004642 7.3e-104 381.3 327 58.4
AUR62027853 Chenopodium quinoa HOM05D003898 ORTHO05D004642 7.3e-104 381.3 313 62.9
Sp6g40350 Schrenkiella parvula HOM05D003898 ORTHO05D004642 2.8e-103 379.4 307 62.5
A10p33510 Brassica napus HOM05D003898 ORTHO05D004642 3.6e-103 379.0 307 61.9
CARHR012640 Cardamine hirsuta HOM05D003898 ORTHO05D004642 2.3e-102 376.3 307 61.9
TAR381G1034 Trochodendron aralioides HOM05D003898 ORTHO05D004642 3.1e-102 375.9 273 68.9
Solyc04g072480.3 Solanum lycopersicum HOM05D003898 ORTHO05D004642 4.0e-102 375.6 351 56.4
Aa31LG9G14440 Aethionema arabicum HOM05D003898 ORTHO05D004642 6.8e-102 374.8 289 65.4
BraA02t04709Z Brassica rapa HOM05D003898 ORTHO05D004642 2.0e-101 373.2 314 62.1
Thhalv10014147m.g Eutrema salsugineum HOM05D003898 ORTHO05D004642 2.6e-101 372.9 308 61.0
BcaNung04450 Brassica carinata HOM05D003898 ORTHO05D004642 4.4e-101 372.1 307 61.9
C09p74420 Brassica napus HOM05D003898 ORTHO05D004642 7.5e-101 371.3 307 61.9
Lsat_1_v5_gn_6_68860 Lactuca sativa HOM05D003898 ORTHO05D004642 9.8e-101 370.9 274 67.5
AT1G12350 Arabidopsis thaliana HOM05D003898 ORTHO05D004642 1.1e-99 367.5 311 60.8
BolC9t60175H Brassica oleracea HOM05D003898 ORTHO05D004642 5.4e-99 365.2 307 61.2
BraA10t45381Z Brassica rapa HOM05D003898 ORTHO05D004642 2.0e-98 363.2 333 57.7
Cc10_g06070 Coffea canephora HOM05D003898 ORTHO05D004642 2.7e-98 362.8 274 64.6
C02p00370 Brassica napus HOM05D003898 ORTHO05D004642 7.8e-98 361.3 307 60.6
RcHm_v2.0_Chr1g0340911 Rosa chinensis HOM05D003898 ORTHO05D004642 7.8e-98 361.3 265 67.2
AL1G23670 Arabidopsis lyrata HOM05D003898 ORTHO05D004642 2.3e-97 359.8 311 59.2
BcaNung06026 Brassica carinata HOM05D003898 ORTHO05D004642 1.9e-96 356.7 307 59.6
FvH4_5g38402 Fragaria vesca HOM05D003898 ORTHO05D004642 7.3e-96 354.8 245 68.6
HPP92_006004 Vanilla planifolia HOM05D003898 ORTHO05D004642 3.6e-95 352.4 324 55.6
Oeu038191.1 Olea europaea HOM05D003898 ORTHO05D004642 1.4e-94 350.5 308 59.7
SalBow7G2097 Salvia bowleyana HOM05D003898 ORTHO05D004642 5.2e-94 348.6 323 57.0
Os02g0575200 Oryza sativa ssp. japonica HOM05D003898 ORTHO05D004642 8.9e-94 347.8 307 58.0
SEGI_30417 Sequoiadendron giganteum HOM05D003898 ORTHO05D004642 2.0e-93 346.7 321 56.7
Pp3c11_3000 Physcomitrium patens HOM05D003898 ORTHO05D004642 4.9e-92 342.0 306 54.9
Zm00001eb182920 Zea mays HOM05D003898 ORTHO05D004642 1.9e-91 340.1 301 57.5
Os08g0176100 Oryza sativa ssp. japonica HOM05D003898 ORTHO05D004642 4.1e-91 339.0 304 56.2
CSS0031031 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 3.5e-90 335.9 321 56.1
Nitab4.5_0001307g0170 Nicotiana tabacum HOM05D003898 ORTHO05D004642 3.5e-90 335.9 324 54.3
Mapoly0004s0284 Marchantia polymorpha HOM05D003898 ORTHO05D004642 2.3e-89 333.2 317 54.3
Zm00001eb414730 Zea mays HOM05D003898 ORTHO05D004642 6.2e-87 325.1 315 54.3
Nn1g05207 Nelumbo nucifera HOM05D003898 ORTHO05D004642 1.1e-86 324.3 247 62.3
FAN06G3434 Fragaria x ananassa HOM05D000001 ORTHO05D000003 6.4e-84 315.1 322 52.8
Solyc10g011840.3 Solanum lycopersicum HOM05D003898 ORTHO05D004642 6.4e-84 315.1 316 53.8
Duzib116G0208 Durio zibethinus HOM05D003898 ORTHO05D004642 4.4e-77 292.4 311 52.1
MD15G1360400 Malus domestica HOM05D003898 ORTHO05D004642 4.4e-77 292.4 228 64.5
SalBow1G7967 Salvia bowleyana HOM05D003898 ORTHO05D004642 7.3e-72 275.0 305 49.5
SMO137G0130 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 1.8e-70 270.4 308 49.0
ClCG08G002640 Citrullus lanatus HOM05D003898 ORTHO05D004642 4.0e-70 269.2 456 37.9
AL6G11300 Arabidopsis lyrata HOM05D003898 ORTHO05D004642 3.4e-69 266.2 201 65.2
ATR0564G227 Amborella trichopoda HOM05D003898 ORTHO05D004642 9.9e-69 264.6 225 57.8
Psat4g046560 Pisum sativum HOM05D003898 ORTHO05D011365 1.4e-67 260.8 173 78.0
Ca_25770_v3 Cicer arietinum L. HOM05D003898 ORTHO05D004642 3.4e-61 239.6 154 78.6
CDE10G0276 Ceratophyllum demersum HOM05D003898 ORTHO05D004642 3.5e-58 229.6 164 67.7
Dinv44720 Davidia involucrata HOM05D003898 ORTHO05D004642 3.5e-58 229.6 180 63.9
FAN04G1035 Fragaria x ananassa HOM05D003898 ORTHO05D004642 6.0e-58 228.8 208 59.1
AagrBONN_evm.TU.Sc2ySwM_344.1574 Anthoceros agrestis HOM05D003898 ORTHO05D004642 2.3e-57 226.9 197 55.8
SMO137G0020 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 1.9e-56 223.8 268 48.9
AT5G02080 Arabidopsis thaliana HOM05D003898 ORTHO05D004642 3.3e-56 223.0 184 62.0
PGSC0003DMG400027542 Solanum tuberosum HOM05D003898 ORTHO05D004642 7.4e-56 221.9 183 60.7
Atru.chr13.1300 Acer truncatum HOM05D003898 ORTHO05D004642 1.6e-55 220.7 169 67.5
Cre01.g048050 Chlamydomonas reinhardtii HOM05D003898 ORTHO05D004642 1.5e-53 214.2 305 42.6
PRCOL_00003493 Prasinoderma coloniale HOM05D003898 ORTHO05D004642 7.6e-53 211.8 349 39.0
BolC2t06037H Brassica oleracea HOM05D003898 ORTHO05D004642 1.2e-50 204.5 169 61.5
DCAR_027594 Daucus carota HOM05D003898 ORTHO05D004642 1.3e-49 201.1 214 52.8
Eucgr.F04382 Eucalyptus grandis HOM05D003898 ORTHO05D004642 5.1e-49 199.1 146 67.8
Nitab4.5_0000553g0060 Nicotiana tabacum HOM05D003898 ORTHO05D004642 6.7e-49 198.7 248 46.4
Sopen10g005660 Solanum pennellii HOM05D003898 ORTHO05D004642 1.5e-48 197.6 221 48.4
SMO137G0337 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 2.5e-48 196.8 217 49.8
MCO09G707 Micromonas commoda HOM05D003898 ORTHO05D004642 1.6e-47 194.1 284 41.9
Atru.chr13.1301 Acer truncatum HOM05D003898 ORTHO05D004642 2.9e-44 183.3 138 63.8
Lj4C710T9 Lonicera japonica HOM05D003898 ORTHO05D004642 8.5e-44 181.8 138 67.4
FAN18G1940 Fragaria x ananassa HOM05D003898 ORTHO05D004642 9.4e-43 178.3 193 52.3
arahy.Tifrunner.gnm1.ann1.Z5SK82 Arachis hypogaea HOM05D003898 ORTHO05D004642 4.3e-40 169.5 182 55.5
unitig_32.g11143 Utricularia gibba HOM05D003898 ORTHO05D004642 1.3e-39 167.9 132 62.9
Cfa024377 Carpinus fangiana HOM05D003898 ORTHO05D004642 2.8e-39 166.8 311 39.2
CBR_g9000 Chara braunii HOM05D003898 ORTHO05D004642 1.4e-38 164.5 169 48.5
Atru.chr4.493 Acer truncatum HOM05D003898 ORTHO05D004642 5.3e-38 162.5 121 63.6
Atru.chr1.2069 Acer truncatum HOM05D003898 ORTHO05D004642 5.9e-37 159.1 117 65.0
SEGI_10597 Sequoiadendron giganteum HOM05D003898 ORTHO05D004642 4.2e-35 152.9 149 55.7
arahy.Tifrunner.gnm1.ann1.N7W281 Arachis hypogaea HOM05D003898 ORTHO05D004642 1.8e-33 147.5 142 60.6
Duzib041G0680 Durio zibethinus HOM05D003898 ORTHO05D004642 1.4e-27 127.9 106 63.2
CBR_g9001 Chara braunii HOM05D003898 ORTHO05D004642 2.4e-22 110.5 118 53.4
unitig_32.g11144 Utricularia gibba HOM05D003898 ORTHO05D004642 7.0e-22 109.0 116 53.4
Aqoxy480s002 Aquilegia oxysepala HOM05D003898 ORTHO05D004642 2.0e-21 107.5 126 44.4
arahy.Tifrunner.gnm1.ann1.9J7JQ6 Arachis hypogaea HOM05D003898 ORTHO05D004642 2.5e-19 100.5 62 77.4
QL10p044069 Quercus lobata HOM05D003898 ORTHO05D004642 8.2e-15 85.5 82 52.4
QL02p062685 Quercus lobata HOM05D003898 ORTHO05D004642 4.1e-14 83.2 82 51.2
arahy.Tifrunner.gnm1.ann1.KW4E90 Arachis hypogaea HOM05D003898 ORTHO05D004642 5.9e-13 79.3 49 75.5
Peaxi162Scf00756g00110 Petunia axillaris HOM05D003898 ORTHO05D004642 1.3e-12 78.2 90 44.4
Ah.05g170600 Amaranthus hybridus HOM05D003898 ORTHO05D004642 8.5e-12 75.5 85 48.2
QL10p009819 Quercus lobata HOM05D003898 ORTHO05D004642 1.0e-09 68.6 63 54.0
Aqoxy5G01116 Aquilegia oxysepala HOM05D003898 ORTHO05D004642 5.2e-09 66.2 45 71.1
QL08p011560 Quercus lobata HOM05D003898 ORTHO05D004642 2.6e-08 63.9 63 52.4
arahy.Tifrunner.gnm1.ann1.YUT84C Arachis hypogaea HOM05D003898 ORTHO05D004642 9.8e-08 62.0 40 80.0
TPR.G17539 Trifolium pratense HOM05D003898 ORTHO05D411187 3.7e-07 60.1 37 73.0
Atru.chr5.2810 Acer truncatum HOM05D003898 ORTHO05D004642 8.3e-07 58.9 56 50.0
arahy.Tifrunner.gnm1.ann1.8FT8UW Arachis hypogaea HOM05D003898 ORTHO05D000721 4.1e-06 56.6 49 57.1
arahy.Tifrunner.gnm1.ann1.JWT6XR Arachis hypogaea HOM05D003898 ORTHO05D004642 4.1e-06 56.6 49 57.1
Lj4A710G53 Lonicera japonica HOM05D003898 ORTHO05D004642 7.0e-06 55.8 32 75.0


User provided reference genes

Program Settings