Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.009G015200 Phaseolus vulgaris HOM05D004047 ORTHO05D004772 0.0e+00 1473.4 828 100.0
VMungo1309G2404 Vigna mungo HOM05D004047 ORTHO05D004772 0.0e+00 1321.6 828 90.0
Glyma.06G025800 Glycine max HOM05D004047 ORTHO05D004772 0.0e+00 1197.6 845 81.8
Glyma.04G026000 Glycine max HOM05D004047 ORTHO05D004772 7.2e-257 891.0 729 73.9
Lalb_Chr08g0246131 Lupinus albus HOM05D004047 ORTHO05D004772 1.7e-253 879.8 824 62.5
Lalb_Chr11g0062011 Lupinus albus HOM05D004047 ORTHO05D004772 3.2e-249 865.5 829 60.8
Lj5g0017583 Lotus japonicus HOM05D004047 ORTHO05D004772 7.5e-230 801.2 867 57.8
Lalb_Chr14g0369751 Lupinus albus HOM05D004047 ORTHO05D004772 3.4e-222 775.8 832 57.8
arahy.Tifrunner.gnm1.ann1.7CTW4M Arachis hypogaea HOM05D004047 ORTHO05D004772 9.2e-212 741.1 821 56.6
arahy.Tifrunner.gnm1.ann1.D2JYDS Arachis hypogaea HOM05D004047 ORTHO05D004772 1.2e-211 740.7 821 56.4
Ca_29786_v3 Cicer arietinum L. HOM05D004047 ORTHO05D004772 3.3e-209 732.6 820 56.7
Ca_13402_v3 Cicer arietinum L. HOM05D004047 ORTHO05D004772 1.2e-208 730.7 817 56.9
Ca_13415_v3 Cicer arietinum L. HOM05D004047 ORTHO05D004772 1.2e-208 730.7 817 56.9
Medtr1g023760 Medicago truncatula HOM05D004047 ORTHO05D004772 8.0e-208 728.0 849 56.5
Psat6g004160 Pisum sativum HOM05D004047 ORTHO05D004772 2.1e-200 703.4 851 55.7
arahy.Tifrunner.gnm1.ann1.261ZZU Arachis hypogaea HOM05D004047 ORTHO05D004772 3.7e-197 692.6 836 53.7
arahy.Tifrunner.gnm1.ann1.GHU3Y0 Arachis hypogaea HOM05D004047 ORTHO05D004772 2.8e-192 676.4 836 53.0
Cfa013920 Carpinus fangiana HOM05D004047 ORTHO05D004772 8.9e-191 671.4 840 53.0
QL02p010984 Quercus lobata HOM05D004047 ORTHO05D004772 4.2e-188 662.5 870 51.6
Dinv31823 Davidia involucrata HOM05D004047 ORTHO05D004772 4.6e-187 659.1 873 49.9
Manes.18G016100 Manihot esculenta HOM05D004047 ORTHO05D004772 4.3e-177 625.9 838 49.8
Lj1g0015956 Lotus japonicus HOM05D004047 ORTHO05D004772 8.1e-176 621.7 839 50.9
Prupe.1G369000 Prunus persica HOM05D004047 ORTHO05D004772 5.3e-175 619.0 849 48.9
Atru.chr13.329 Acer truncatum HOM05D004047 ORTHO05D004772 4.5e-174 615.9 875 49.4
Potri.002G025200 Populus trichocarpa HOM05D004047 ORTHO05D004772 9.3e-172 608.2 854 49.5
Ciclev10000295m.g Citrus clementina HOM05D004047 ORTHO05D004772 2.1e-171 607.1 869 48.3
Haze_22603 Corylus avellana HOM05D004047 ORTHO05D004772 2.3e-170 603.6 840 49.3
TAR381G0884 Trochodendron aralioides HOM05D004047 ORTHO05D004772 4.6e-163 579.3 840 47.9
Duzib093G0674 Durio zibethinus HOM05D004047 ORTHO05D004772 6.0e-163 578.9 893 45.9
Cpa.g.sc26.21 Carica papaya HOM05D004047 ORTHO05D004772 1.3e-162 577.8 932 45.5
Duzib116G0032 Durio zibethinus HOM05D004047 ORTHO05D004772 1.5e-161 574.3 887 45.8
CSS0029692 Camellia sinensis var. sinensis HOM05D004047 ORTHO05D004772 9.0e-159 565.1 842 46.6
Gorai.002G124800 Gossypium raimondii HOM05D004047 ORTHO05D004772 2.0e-158 563.9 885 44.6
Gohir.D01G099500 Gossypium hirsutum HOM05D004047 ORTHO05D004772 1.0e-157 561.6 885 44.5
Potri.005G236200 Populus trichocarpa HOM05D004047 ORTHO05D004772 2.2e-157 560.5 846 46.9
Gohir.A01G112700 Gossypium hirsutum HOM05D004047 ORTHO05D004772 2.9e-157 560.1 885 44.4
TWI56G0272 Tripterygium wilfordii HOM05D004047 ORTHO05D004772 2.1e-155 553.9 848 47.5
Actinidia15402 Actinidia chinensis HOM05D004047 ORTHO05D004772 1.8e-154 550.8 842 46.4
CANSAT25G0097 Cannabis sativa HOM05D004047 ORTHO05D004772 1.5e-153 547.7 900 42.8
Sabra02G0020200 Salix brachista HOM05D004047 ORTHO05D004772 3.3e-153 546.6 893 44.9
Duzib041G0005 Durio zibethinus HOM05D004047 ORTHO05D004772 9.7e-153 545.0 874 44.6
TPR.G34366 Trifolium pratense HOM05D004047 ORTHO05D004772 6.3e-152 542.3 760 53.7
RcHm_v2.0_Chr6g0302451 Rosa chinensis HOM05D004047 ORTHO05D004772 1.4e-151 541.2 843 46.4
Nn5g29267 Nelumbo nucifera HOM05D004047 ORTHO05D004772 6.9e-151 538.9 843 45.3
TWI12G0119 Tripterygium wilfordii HOM05D004047 ORTHO05D004772 1.0e-149 535.0 842 45.1
FvH4_2g38820 Fragaria vesca HOM05D004047 ORTHO05D004772 5.0e-149 532.7 898 44.1
FAN15G3510 Fragaria x ananassa HOM05D004047 ORTHO05D004772 3.6e-147 526.6 891 43.2
Nn6g32284 Nelumbo nucifera HOM05D004047 ORTHO05D004772 2.0e-145 520.8 841 44.5
FAN27G1251 Fragaria x ananassa HOM05D004047 ORTHO05D004772 7.4e-145 518.8 899 42.9
Aqoxy6G02326 Aquilegia oxysepala HOM05D004047 ORTHO05D004772 9.7e-145 518.5 865 43.0
FAN20G0280 Fragaria x ananassa HOM05D004047 ORTHO05D004772 3.7e-144 516.5 880 42.7
Gohir.A05G188000 Gossypium hirsutum HOM05D004047 ORTHO05D004772 2.6e-142 510.4 916 42.4
Actinidia16963 Actinidia chinensis HOM05D004047 ORTHO05D004772 1.3e-141 508.1 844 44.0
Gorai.009G196200 Gossypium raimondii HOM05D004047 ORTHO05D004772 2.2e-141 507.3 918 42.7
TAR376G1182 Trochodendron aralioides HOM05D004047 ORTHO05D004772 1.9e-140 504.2 954 40.9
CiPaw.08G064100 Carya illinoinensis HOM05D004047 ORTHO05D004772 2.5e-140 503.8 687 49.1
CsaV3_3G045640 Cucumis sativus L. HOM05D004047 ORTHO05D004772 1.0e-138 498.4 842 43.2
CSS0011131 Camellia sinensis var. sinensis HOM05D004047 ORTHO05D004772 5.1e-138 496.1 946 43.2
Hma1.2p1_2476F.1_g322840 Hydrangea macrophylla HOM05D004047 ORTHO05D004772 2.0e-137 494.2 836 44.7
Oeu054711.1 Olea europaea HOM05D004047 ORTHO05D004772 4.4e-137 493.0 842 43.6
ClCG08G014420 Citrullus lanatus HOM05D004047 ORTHO05D004772 5.7e-137 492.7 846 43.3
Gohir.D05G191000 Gossypium hirsutum HOM05D004047 ORTHO05D004772 7.4e-137 492.3 919 42.1
MD08G1015800 Malus domestica HOM05D004047 ORTHO05D004772 2.8e-136 490.3 1028 38.3
Eucgr.F01629 Eucalyptus grandis HOM05D004047 ORTHO05D004772 1.4e-135 488.0 896 42.2
ClCG05G018530 Citrullus lanatus HOM05D004047 ORTHO05D004772 1.8e-135 487.6 838 44.2
Rhsim07G0245700 Rhododendron simsii HOM05D004047 ORTHO05D004772 4.1e-135 486.5 857 41.3
MD15G1014800 Malus domestica HOM05D004047 ORTHO05D004772 5.0e-133 479.6 852 42.5
PGR083G1283 Punica granatum HOM05D004047 ORTHO05D004772 5.5e-132 476.1 880 41.2
Cc10_g01950 Coffea canephora HOM05D004047 ORTHO05D004772 3.6e-131 473.4 842 40.3
MELO3C010997.2 Cucumis melo HOM05D004047 ORTHO05D004772 2.8e-128 463.8 897 40.0
Sabra05G0182600 Salix brachista HOM05D004047 ORTHO05D004772 7.0e-127 459.1 837 42.3
DCAR_009937 Daucus carota HOM05D004047 ORTHO05D004772 3.5e-126 456.8 803 42.3
Peaxi162Scf00287g01716 Petunia axillaris HOM05D004047 ORTHO05D004772 1.0e-125 455.3 944 38.7
Sed0024056 Sechium edule HOM05D004047 ORTHO05D004772 5.0e-125 453.0 843 40.7
DCAR_022438 Daucus carota HOM05D004047 ORTHO05D004772 5.5e-124 449.5 835 40.4
Nitab4.5_0005185g0030 Nicotiana tabacum HOM05D004047 ORTHO05D004772 3.0e-122 443.7 944 37.9
CsaV3_2G029380 Cucumis sativus L. HOM05D004047 ORTHO05D004772 4.0e-122 443.4 888 39.8
Thecc.08G040700 Theobroma cacao HOM05D004047 ORTHO05D004772 6.8e-122 442.6 655 47.9
PSO541G1521 Papaver somniferum HOM05D004047 ORTHO05D004772 8.8e-122 442.2 863 39.0
PGSC0003DMG400003722 Solanum tuberosum HOM05D004047 ORTHO05D004772 2.6e-121 440.7 948 38.8
MSTRG.25224 Avicennia marina HOM05D004047 ORTHO05D004772 9.8e-121 438.7 842 41.2
PSO675G6151 Papaver somniferum HOM05D004047 ORTHO05D004772 9.8e-121 438.7 863 39.2
Sopen04g034820 Solanum pennellii HOM05D004047 ORTHO05D004772 6.3e-120 436.0 944 39.1
MBI05_g26515_MAGBIO Magnolia biondii HOM05D004047 ORTHO05D004772 8.3e-120 435.6 864 40.3
Solyc04g081210.4 Solanum lycopersicum HOM05D004047 ORTHO05D004772 2.7e-118 430.6 941 38.7
CAN.G1271.11 Capsicum annuum HOM05D004047 ORTHO05D004772 7.7e-118 429.1 951 38.1
Nitab4.5_0001242g0060 Nicotiana tabacum HOM05D004047 ORTHO05D004772 1.0e-114 418.7 841 39.2
Migut.C00820 Erythranthe guttata HOM05D004047 ORTHO05D004772 1.2e-113 415.2 852 39.6
Peaxi162Scf00186g00119 Petunia axillaris HOM05D004047 ORTHO05D004772 1.2e-113 415.2 803 39.0
Dinv39496 Davidia involucrata HOM05D004047 ORTHO05D004772 1.2e-110 405.2 606 47.4
Lj4A794G38 Lonicera japonica HOM05D004047 ORTHO05D004772 1.3e-109 401.7 798 40.0
Sed0015722 Sechium edule HOM05D004047 ORTHO05D004772 2.9e-109 400.6 841 39.2
Nitab4.5_0005489g0020 Nicotiana tabacum HOM05D004047 ORTHO05D004772 1.1e-108 398.7 876 37.7
Gohir.A06G005600 Gossypium hirsutum HOM05D004047 ORTHO05D004772 3.7e-104 383.6 844 37.9
SGA_v2.0_scaffold92G28267 Striga asiatica HOM05D004047 ORTHO05D004772 4.1e-103 380.2 834 38.7
SalBow7G0720 Salvia bowleyana HOM05D004047 ORTHO05D004772 2.5e-100 370.9 955 36.1
Gorai.010G005800 Gossypium raimondii HOM05D004047 ORTHO05D004772 4.3e-100 370.2 834 37.5
Aqoxy5G01461 Aquilegia oxysepala HOM05D004047 ORTHO05D004772 9.5e-100 369.0 892 36.0
Gohir.D06G001400 Gossypium hirsutum HOM05D004047 ORTHO05D004772 1.6e-99 368.2 845 37.5
vmacro04336 Vaccinium macrocarpon HOM05D004047 ORTHO05D004772 1.5e-97 361.7 724 38.7
EL10Ac1g02250 Beta vulgaris HOM05D004047 ORTHO05D004772 2.6e-97 360.9 934 34.6
HanXRQChr04g0101151 Helianthus annuus HOM05D004047 ORTHO05D004772 1.3e-96 358.6 840 36.5
SalBow8G2734 Salvia bowleyana HOM05D004047 ORTHO05D004772 1.1e-95 355.5 852 37.9
Sed0015788 Sechium edule HOM05D004047 ORTHO05D004772 1.9e-95 354.8 1007 34.4
Hund05219 Selenicereus undatus HOM05D004047 ORTHO05D004772 4.1e-95 353.6 967 36.7
Sc02g0008420 Simmondsia chinensis HOM05D004047 ORTHO05D004772 7.8e-94 349.4 888 34.6
HanXRQChr13g0387331 Helianthus annuus HOM05D004047 ORTHO05D004772 2.5e-92 344.4 893 38.9
SGA_v2.0_scaffold11G05888 Striga asiatica HOM05D004047 ORTHO05D004772 4.3e-92 343.6 851 39.5
Actinidia29790 Actinidia chinensis HOM05D004047 ORTHO05D004772 2.3e-90 337.8 553 44.1
ECA238G1430 Erigeron canadensis HOM05D004047 ORTHO05D004772 8.3e-88 329.3 847 36.4
GSVIVG01009858001 Vitis vinifera HOM05D004047 ORTHO05D004772 3.2e-87 327.4 590 42.4
CDE02G3574 Ceratophyllum demersum HOM05D004047 ORTHO05D004772 5.4e-87 326.6 854 35.1
Lsat_1_v5_gn_8_31420 Lactuca sativa HOM05D004047 ORTHO05D004772 9.2e-87 325.9 872 34.4
Oeu007049.1 Olea europaea HOM05D004047 ORTHO05D004772 1.2e-86 325.5 1049 32.1
Oeu027553.1 Olea europaea HOM05D004047 ORTHO05D004772 1.3e-85 322.0 770 36.1
Lj4C28G12 Lonicera japonica HOM05D004047 ORTHO05D003043 2.5e-84 317.8 660 39.1
ECA233G3940 Erigeron canadensis HOM05D004047 ORTHO05D004772 1.4e-82 312.0 899 36.8
Ah.11g039490 Amaranthus hybridus HOM05D004047 ORTHO05D004772 5.2e-82 310.1 927 33.2
AUR62035714 Chenopodium quinoa HOM05D004047 ORTHO05D004772 6.4e-80 303.1 1038 30.5
HanXRQChr14g0431291 Helianthus annuus HOM05D004047 ORTHO05D004772 9.2e-79 299.3 838 32.7
HanXRQChr12g0367641 Helianthus annuus HOM05D004047 ORTHO05D004772 7.8e-78 296.2 881 36.4
PSO170G4872 Papaver somniferum HOM05D004047 ORTHO05D004772 3.9e-77 293.9 1027 28.4
HPP92_001560 Vanilla planifolia HOM05D004047 ORTHO05D004772 1.5e-76 292.0 864 33.1
PSO210G3933 Papaver somniferum HOM05D004047 ORTHO05D004772 1.2e-75 288.9 1027 28.9
MELO3C003773.2 Cucumis melo HOM05D004047 ORTHO05D004772 1.9e-71 275.0 555 40.9
CDE04G1192 Ceratophyllum demersum HOM05D004047 ORTHO05D004772 7.1e-71 273.1 837 33.7
AUR62035431 Chenopodium quinoa HOM05D004047 ORTHO05D004772 7.1e-71 273.1 1037 31.1
A06p16070 Brassica napus HOM05D004047 ORTHO05D004772 1.9e-68 265.0 910 31.5
Actinidia37973 Actinidia chinensis HOM05D004047 ORTHO05D004772 5.6e-68 263.5 646 36.7
Thhalv10006839m.g Eutrema salsugineum HOM05D004047 ORTHO05D004772 7.3e-68 263.1 922 31.8
BolC8t49616H Brassica oleracea HOM05D004047 ORTHO05D004772 1.3e-67 262.3 886 33.6
BcaB07g32005 Brassica carinata HOM05D004047 ORTHO05D004772 8.1e-67 259.6 906 32.9
BraA06t24713Z Brassica rapa HOM05D004047 ORTHO05D004772 8.1e-67 259.6 918 31.6
BcaC07g39006 Brassica carinata HOM05D004047 ORTHO05D004772 1.1e-66 259.2 890 33.8
AL1G32600 Arabidopsis lyrata HOM05D004047 ORTHO05D004772 3.1e-66 257.7 932 31.8
BcaC05g25881 Brassica carinata HOM05D004047 ORTHO05D004772 4.0e-66 257.3 892 31.4
C05p18380 Brassica napus HOM05D004047 ORTHO05D004772 4.0e-66 257.3 892 31.4
BolC5t30548H Brassica oleracea HOM05D004047 ORTHO05D004772 4.0e-66 257.3 892 31.4
C08p19780 Brassica napus HOM05D004047 ORTHO05D004772 2.6e-65 254.6 871 33.3
THA.LOC104811392 Tarenaya hassleriana HOM05D004047 ORTHO05D004772 3.8e-64 250.8 934 32.1
Sp1g17670 Schrenkiella parvula HOM05D004047 ORTHO05D004772 4.9e-64 250.4 916 32.3
Aa31LG7G4370 Aethionema arabicum HOM05D004047 ORTHO05D003043 1.9e-63 248.4 924 31.8
BcaB03g12894 Brassica carinata HOM05D004047 ORTHO05D004772 7.1e-63 246.5 883 32.5
A08p29630 Brassica napus HOM05D004047 ORTHO05D004772 7.1e-63 246.5 905 32.0
THA.LOC104813799 Tarenaya hassleriana HOM05D004047 ORTHO05D004772 9.3e-63 246.1 947 32.0
AT1G19870 Arabidopsis thaliana HOM05D004047 ORTHO05D004772 2.3e-61 241.5 936 31.3
unitig_8.g4918 Utricularia gibba HOM05D004047 ORTHO05D004772 8.7e-61 239.6 812 31.7
CARHR020370 Cardamine hirsuta HOM05D004047 ORTHO05D004772 3.1e-58 231.1 926 30.3
Lsat_1_v5_gn_2_11701 Lactuca sativa HOM05D004047 ORTHO05D004772 1.1e-55 222.6 845 30.2
Carub.0001s1939 Capsella rubella HOM05D004047 ORTHO05D004772 2.4e-55 221.5 931 31.0
SHI08087 Sapria himalayana HOM05D004047 ORTHO05D004772 5.1e-53 213.8 800 30.2
Dinv39497 Davidia involucrata HOM05D004047 ORTHO05D004772 2.8e-51 208.0 190 63.2
Os04g0663100 Oryza sativa ssp. japonica HOM05D004047 ORTHO05D004772 8.4e-48 196.4 753 30.1
Zm00001eb432990 Zea mays HOM05D004047 ORTHO05D004772 4.1e-42 177.6 763 28.8
Zm00001eb067350 Zea mays HOM05D004047 ORTHO05D004772 5.9e-41 173.7 744 29.0
unitig_578.g16088 Utricularia gibba HOM05D004047 ORTHO05D004772 7.2e-39 166.8 575 31.1
ATR0147G010 Amborella trichopoda HOM05D004047 ORTHO05D004772 1.9e-36 158.7 630 31.0
Migut.N03142 Erythranthe guttata HOM05D004047 ORTHO05D004772 5.3e-34 150.6 833 27.3
THA.LOC104806899 Tarenaya hassleriana HOM05D004047 ORTHO05D004772 1.9e-31 142.1 820 28.8
vmacro04323 Vaccinium macrocarpon HOM05D004047 ORTHO05D004772 1.5e-28 132.5 314 35.4
ATR0952G001 Amborella trichopoda HOM05D004047 ORTHO05D004772 5.5e-23 114.0 180 55.0
Lsat_1_v5_gn_8_51360 Lactuca sativa HOM05D004047 ORTHO05D004772 7.4e-20 103.6 333 30.0
Psat6g243160 Pisum sativum HOM05D004047 ORTHO05D004772 2.8e-19 101.7 89 61.8
Psat1g160560 Pisum sativum HOM05D004047 ORTHO05D004772 3.7e-19 101.3 115 53.0
unitig_578.g16089 Utricularia gibba HOM05D004047 ORTHO05D004772 1.4e-18 99.4 75 66.7
Medtr8g466020 Medicago truncatula HOM05D000528 ORTHO05D026571 1.1e-15 89.7 151 50.3
HPP92_020925 Vanilla planifolia HOM05D004047 ORTHO05D004772 4.2e-15 87.8 351 28.8
Psat3g033200 Pisum sativum HOM05D000528 ORTHO05D011662 5.5e-15 87.4 85 55.3
Medtr7g007170 Medicago truncatula HOM05D004047 ORTHO05D004772 5.2e-13 80.9 98 48.0
Medtr1g023925 Medicago truncatula HOM05D004047 ORTHO05D004772 1.2e-09 69.7 111 45.0
Ciclev10031221m.g Citrus clementina HOM05D002126 ORTHO05D002195 2.2e-08 65.5 281 28.8
CANSAT64G2703 Cannabis sativa HOM05D002126 ORTHO05D002195 3.8e-08 64.7 191 26.7
CANSAT64G2301 Cannabis sativa HOM05D002126 ORTHO05D002195 5.0e-08 64.3 191 26.7
Psat1g158360 Pisum sativum HOM05D000344 ORTHO05D025701 5.0e-08 64.3 69 55.1
CSS0030269 Camellia sinensis var. sinensis HOM05D010463 ORTHO05D004772 6.5e-08 63.9 67 53.7
Dinv34213 Davidia involucrata HOM05D002126 ORTHO05D002195 6.5e-08 63.9 175 29.1
SEGI_07284 Sequoiadendron giganteum HOM05D000004 ORTHO05D000002 1.1e-07 63.2 183 35.0
Lsat_1_v5_gn_2_88840 Lactuca sativa HOM05D002126 ORTHO05D002195 3.2e-07 61.6 138 33.3
CARHR084130 Cardamine hirsuta HOM05D000156 ORTHO05D001430 7.2e-07 60.5 201 27.9
MSTRG.3224 Avicennia marina HOM05D002126 ORTHO05D002195 9.4e-07 60.1 136 29.4
Aqoxy6G00312 Aquilegia oxysepala HOM05D000051 ORTHO05D031295 2.1e-06 58.9 170 34.7
MSTRG.15482 Avicennia marina HOM05D002126 ORTHO05D002195 2.1e-06 58.9 266 26.7
MSTRG.3320 Avicennia marina HOM05D002126 ORTHO05D002195 2.7e-06 58.5 238 26.9
ECA246G3053 Erigeron canadensis HOM05D002126 ORTHO05D002195 4.7e-06 57.8 239 24.7


User provided reference genes

Program Settings