Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G235900 Phaseolus vulgaris HOM05D004142 ORTHO05D005411 0.0e+00 1180.6 607 100.0
VMungo0647G1269 Vigna mungo HOM05D004142 ORTHO05D005411 0.0e+00 1093.2 609 93.6
Glyma.14G215500 Glycine max HOM05D004142 ORTHO05D005411 2.3e-297 1025.0 607 87.6
Glyma.02G245400 Glycine max HOM05D004142 ORTHO05D005411 4.7e-290 1000.7 592 88.3
Lalb_Chr04g0251341 Lupinus albus HOM05D004142 ORTHO05D005411 1.7e-263 912.5 595 79.7
Psat2g043640 Pisum sativum HOM05D004142 ORTHO05D005411 4.0e-257 891.3 610 77.0
Medtr5g078780 Medicago truncatula HOM05D004142 ORTHO05D005411 2.1e-250 869.0 600 75.7
LjContig00141g0017492 Lotus japonicus HOM05D004142 ORTHO05D005411 1.1e-249 866.7 614 75.6
Ca_01556_v3 Cicer arietinum L. HOM05D004142 ORTHO05D005411 6.4e-247 857.4 634 72.4
TPR.G8874 Trifolium pratense HOM05D004142 ORTHO05D005411 1.9e-243 845.9 605 73.9
arahy.Tifrunner.gnm1.ann1.FRA838 Arachis hypogaea HOM05D004142 ORTHO05D005411 1.8e-233 812.8 616 71.6
arahy.Tifrunner.gnm1.ann1.52DH7S Arachis hypogaea HOM05D004142 ORTHO05D005411 1.1e-230 803.5 622 70.1
Cfa005371 Carpinus fangiana HOM05D004142 ORTHO05D005411 9.4e-222 773.9 589 68.3
Dinv14174 Davidia involucrata HOM05D004142 ORTHO05D005411 1.6e-221 773.1 601 67.1
arahy.Tifrunner.gnm1.ann1.0H97XI Arachis hypogaea HOM05D004142 ORTHO05D005411 5.1e-220 768.1 616 68.7
QL11p056391 Quercus lobata HOM05D004142 ORTHO05D005411 8.8e-220 767.3 600 68.7
Atru.chr3.3247 Acer truncatum HOM05D004142 ORTHO05D005411 4.1e-217 758.4 603 66.5
Ciclev10028022m.g Citrus clementina HOM05D004142 ORTHO05D005411 3.8e-215 751.9 605 65.6
Thecc.02G146100 Theobroma cacao HOM05D004142 ORTHO05D005411 6.1e-213 744.6 605 64.8
CSS0035317 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 1.8e-212 743.0 615 63.9
TWI75G0433 Tripterygium wilfordii HOM05D004142 ORTHO05D005411 2.0e-211 739.6 591 64.3
Potri.009G168100 Populus trichocarpa HOM05D004142 ORTHO05D005411 1.3e-210 736.9 589 65.0
Duzib052G0377 Durio zibethinus HOM05D004142 ORTHO05D005411 4.8e-210 734.9 604 64.9
Prupe.8G180000 Prunus persica HOM05D004142 ORTHO05D005411 1.4e-209 733.4 603 62.7
CANSAT25G0210 Cannabis sativa HOM05D004142 ORTHO05D005411 1.6e-208 729.9 585 65.1
Gohir.A13G065000 Gossypium hirsutum HOM05D004142 ORTHO05D005411 2.0e-208 729.6 604 64.6
CSS0014725 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 3.5e-208 728.8 604 63.9
Rhsim11G0198100 Rhododendron simsii HOM05D004142 ORTHO05D005411 5.9e-208 728.0 589 65.2
Gorai.013G064000 Gossypium raimondii HOM05D004142 ORTHO05D005411 1.7e-207 726.5 604 64.6
CiPaw.06G115400 Carya illinoinensis HOM05D004142 ORTHO05D005411 2.2e-207 726.1 597 64.7
TAR633G0693 Trochodendron aralioides HOM05D004142 ORTHO05D005411 2.2e-207 726.1 608 63.0
Haze_02000 Corylus avellana HOM05D004142 ORTHO05D005411 6.5e-207 724.5 627 62.4
Gohir.D13G057300 Gossypium hirsutum HOM05D004142 ORTHO05D005411 8.5e-207 724.2 604 64.4
Eucgr.G01885 Eucalyptus grandis HOM05D004142 ORTHO05D005411 1.5e-206 723.4 596 64.1
FAN24G0393 Fragaria x ananassa HOM05D004142 ORTHO05D005411 2.5e-206 722.6 600 63.0
MD10G1141700 Malus domestica HOM05D004142 ORTHO05D005411 9.4e-206 720.7 603 62.0
Lj5C171T17 Lonicera japonica HOM05D004142 ORTHO05D005411 5.2e-204 714.9 636 60.1
Actinidia20577 Actinidia chinensis HOM05D004142 ORTHO05D005411 2.8e-202 709.1 602 62.8
RcHm_v2.0_Chr6g0280901 Rosa chinensis HOM05D004142 ORTHO05D005411 3.7e-202 708.8 599 61.9
Manes.04G066800 Manihot esculenta HOM05D004142 ORTHO05D005411 8.2e-202 707.6 585 63.8
PGR042G3440 Punica granatum HOM05D004142 ORTHO05D005411 2.4e-201 706.1 598 63.7
Actinidia17993 Actinidia chinensis HOM05D004142 ORTHO05D005411 3.1e-201 705.7 602 62.0
Sopen10g027050 Solanum pennellii HOM05D004142 ORTHO05D005411 3.8e-199 698.7 591 62.8
Solyc10g074560.2 Solanum lycopersicum HOM05D004142 ORTHO05D005411 8.5e-199 697.6 591 62.8
Sabra09G0130600 Salix brachista HOM05D004142 ORTHO05D005852 2.5e-198 696.0 589 62.8
CAN.G765.24 Capsicum annuum HOM05D004142 ORTHO05D005411 6.1e-197 691.4 585 62.7
TWI31G1182 Tripterygium wilfordii HOM05D004142 ORTHO05D005411 5.2e-196 688.3 603 60.5
Peaxi162Scf01986g00004 Petunia axillaris HOM05D004142 ORTHO05D005411 7.5e-195 684.5 585 63.2
CSS0002990 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 1.8e-193 679.9 628 59.7
MELO3C013248.2 Cucumis melo HOM05D004142 ORTHO05D005411 1.0e-191 674.1 589 63.0
FAN15G2670 Fragaria x ananassa HOM05D004142 ORTHO05D005411 2.9e-191 672.5 609 59.4
CsaV3_7G001920 Cucumis sativus L. HOM05D004142 ORTHO05D005411 3.8e-191 672.2 593 61.6
Sed0023655 Sechium edule HOM05D004142 ORTHO05D005411 3.8e-191 672.2 574 62.5
EL10Ac9g21530 Beta vulgaris HOM05D004142 ORTHO05D005411 6.6e-191 671.4 588 59.4
Thhalv10022610m.g Eutrema salsugineum HOM05D004142 ORTHO05D005411 6.1e-189 664.8 603 59.2
COL.COLO4_34310 Corchorus olitorius HOM05D004142 ORTHO05D005411 3.0e-188 662.5 602 60.1
CARHR293590 Cardamine hirsuta HOM05D004142 ORTHO05D005411 5.2e-188 661.8 596 59.1
Cc09_g10830 Coffea canephora HOM05D004142 ORTHO05D005411 8.9e-188 661.0 597 60.6
SGA_v2.0_scaffold98G29302 Striga asiatica HOM05D004142 ORTHO05D005411 1.2e-187 660.6 586 60.6
MSTRG.27614 Avicennia marina HOM05D004142 ORTHO05D005411 1.5e-187 660.2 599 59.8
Aa31LG8G14620 Aethionema arabicum HOM05D004142 ORTHO05D005411 4.4e-187 658.7 600 58.5
Hund06363 Selenicereus undatus HOM05D004142 ORTHO05D005411 4.4e-187 658.7 582 59.8
BcaB07g31738 Brassica carinata HOM05D004142 ORTHO05D005411 2.8e-186 656.0 594 59.1
BcaC04g22983 Brassica carinata HOM05D004142 ORTHO05D005411 4.9e-186 655.2 608 58.2
C09p13280 Brassica napus HOM05D004142 ORTHO05D005411 2.0e-184 649.8 615 57.4
BolC9t54221H Brassica oleracea HOM05D004142 ORTHO05D005411 2.0e-184 649.8 615 57.4
DCAR_005486 Daucus carota HOM05D004142 ORTHO05D005411 2.7e-184 649.4 593 59.9
SalBow5G1400 Salvia bowleyana HOM05D004142 ORTHO05D005411 2.7e-184 649.4 591 61.3
Nn5g31006 Nelumbo nucifera HOM05D004142 ORTHO05D005411 3.5e-184 649.0 602 57.8
SalBow5G4664 Salvia bowleyana HOM05D004142 ORTHO05D005411 7.8e-184 647.9 591 61.1
Sp3g30590 Schrenkiella parvula HOM05D004142 ORTHO05D005411 2.9e-183 646.0 602 58.1
THA.LOC104819692 Tarenaya hassleriana HOM05D004142 ORTHO05D005411 1.1e-182 644.0 604 58.8
BcaB03g16472 Brassica carinata HOM05D004142 ORTHO05D005411 2.5e-182 642.9 594 58.6
A09p11250 Brassica napus HOM05D004142 ORTHO05D005411 9.5e-182 641.0 603 57.4
Ah.05g178840 Amaranthus hybridus HOM05D004142 ORTHO05D005411 8.0e-181 637.9 578 59.9
BraA09t36766Z Brassica rapa HOM05D004142 ORTHO05D005411 1.0e-180 637.5 602 56.8
AL3G50110 Arabidopsis lyrata HOM05D004142 ORTHO05D005411 2.3e-180 636.3 591 57.2
vmacro02340 Vaccinium macrocarpon HOM05D004142 ORTHO05D005411 6.8e-180 634.8 596 58.2
Sc08g0002210 Simmondsia chinensis HOM05D004142 ORTHO05D005411 5.8e-179 631.7 590 58.0
A07p03800 Brassica napus HOM05D004142 ORTHO05D005411 7.5e-179 631.3 601 57.7
BraA07t28174Z Brassica rapa HOM05D004142 ORTHO05D005411 1.7e-178 630.2 605 56.9
Carub.0003s3119 Capsella rubella HOM05D004142 ORTHO05D005411 1.9e-177 626.7 589 57.9
AT2G17250 Arabidopsis thaliana HOM05D004142 ORTHO05D005411 4.1e-177 625.5 585 57.1
ClCG02G003400 Citrullus lanatus HOM05D004142 ORTHO05D005411 1.2e-176 624.0 609 57.6
Migut.B01359 Erythranthe guttata HOM05D004142 ORTHO05D005411 2.7e-176 622.9 581 59.0
ECA233G5375 Erigeron canadensis HOM05D004142 ORTHO05D005411 6.0e-176 621.7 585 58.1
Nitab4.5_0005657g0020 Nicotiana tabacum HOM05D004142 ORTHO05D005411 6.0e-176 621.7 593 59.0
Aqoxy6G01597 Aquilegia oxysepala HOM05D004142 ORTHO05D005411 6.6e-175 618.2 608 57.4
HanXRQChr16g0515111 Helianthus annuus HOM05D004142 ORTHO05D005411 1.5e-174 617.1 588 58.3
HanXRQChr09g0239911 Helianthus annuus HOM05D004142 ORTHO05D005411 3.6e-173 612.5 579 58.4
CDE05G3311 Ceratophyllum demersum HOM05D004142 ORTHO05D005411 1.4e-169 600.5 608 53.3
CSS0034003 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 3.0e-167 592.8 603 55.9
FvH4_2g16780 Fragaria vesca HOM05D004142 ORTHO05D005411 3.4e-163 579.3 498 62.4
Atru.chr5.3556 Acer truncatum HOM05D004142 ORTHO05D005411 2.9e-162 576.2 558 57.0
PSO541G0415 Papaver somniferum HOM05D004142 ORTHO05D005411 6.4e-162 575.1 594 53.7
Lsat_1_v5_gn_5_183861 Lactuca sativa HOM05D004142 ORTHO05D005411 8.3e-162 574.7 583 56.3
PSO675G0945 Papaver somniferum HOM05D004142 ORTHO05D005411 4.1e-161 572.4 594 53.9
AUR62013175 Chenopodium quinoa HOM05D004142 ORTHO05D005411 1.2e-160 570.9 592 55.4
Nitab4.5_0001700g0140 Nicotiana tabacum HOM05D004142 ORTHO05D005411 6.6e-159 565.1 584 56.8
CAN.G397.37 Capsicum annuum HOM05D004142 ORTHO05D005411 1.1e-156 557.8 567 56.3
Zm00001eb428130 Zea mays HOM05D004142 ORTHO05D005411 1.8e-156 557.0 586 52.6
Os04g0585300 Oryza sativa ssp. japonica HOM05D004142 ORTHO05D005411 4.4e-155 552.4 605 50.4
ATR0807G091 Amborella trichopoda HOM05D004142 ORTHO05D005411 1.7e-154 550.4 607 51.9
BcaC06g36246 Brassica carinata HOM05D004142 ORTHO05D005411 9.2e-153 544.7 588 53.1
BolC7t41018H Brassica oleracea HOM05D004142 ORTHO05D005411 1.7e-151 540.4 571 54.1
C07p06050 Brassica napus HOM05D004142 ORTHO05D005411 4.9e-146 522.3 587 51.4
MD05G1138800 Malus domestica HOM05D004142 ORTHO05D005411 2.4e-145 520.0 605 51.2
TAR381G0855 Trochodendron aralioides HOM05D004142 ORTHO05D005411 1.5e-139 500.7 473 60.0
AUR62010174 Chenopodium quinoa HOM05D004142 ORTHO05D005411 3.2e-137 493.0 464 57.3
Mapoly0043s0054 Marchantia polymorpha HOM05D004142 ORTHO05D005411 1.1e-129 468.0 587 47.9
AagrBONN_evm.TU.Sc2ySwM_228.5327 Anthoceros agrestis HOM05D004142 ORTHO05D005411 3.8e-122 443.0 616 44.2
Pp3c9_12610 Physcomitrium patens HOM05D004142 ORTHO05D005411 5.0e-114 416.0 596 42.8
unitig_578.g16758 Utricularia gibba HOM05D004142 ORTHO05D005411 5.5e-113 412.5 580 45.9
BcaB07g31740 Brassica carinata HOM05D004142 ORTHO05D005411 6.3e-101 372.5 492 47.6
Cpa.g.sc60.17 Carica papaya HOM05D004142 ORTHO05D005411 3.6e-96 356.7 367 55.6
Oeu037462.1 Olea europaea HOM05D004142 ORTHO05D005411 8.0e-96 355.5 386 53.1
SHI03795 Sapria himalayana HOM05D004142 ORTHO05D005411 1.4e-87 328.2 262 64.9
SMO338G0043 Selaginella moellendorffii HOM05D004142 ORTHO05D005411 5.2e-87 326.2 545 40.4
Ca_05793_v3 Cicer arietinum L. HOM05D004142 ORTHO05D005411 1.1e-84 318.5 215 76.3
MD11G1014400 Malus domestica HOM05D004142 ORTHO05D005411 4.2e-73 280.0 360 47.2
CBR_g44269 Chara braunii HOM05D004142 ORTHO05D005411 5.2e-71 273.1 377 43.8
HPP92_025664 Vanilla planifolia HOM05D004142 ORTHO05D005411 1.7e-69 268.1 280 52.9
ECA246G3488 Erigeron canadensis HOM05D004142 ORTHO05D005411 6.6e-66 256.1 355 44.8
GSVIVG01004114001 Vitis vinifera HOM05D004142 ORTHO05D005411 2.9e-61 240.7 214 59.8
PRCOL_00005396 Prasinoderma coloniale HOM05D004142 ORTHO05D005411 8.3e-61 239.2 299 43.5
Cre01.g068377 Chlamydomonas reinhardtii HOM05D004142 ORTHO05D005411 1.4e-60 238.4 314 41.4
Cpa.g.sc60.19 Carica papaya HOM05D004142 ORTHO05D005411 1.1e-55 222.2 212 56.6
Eucgr.H04975 Eucalyptus grandis HOM05D004142 ORTHO05D005411 3.4e-54 217.2 240 49.6
Oeu037461.1 Olea europaea HOM05D004142 ORTHO05D005411 8.6e-50 202.6 119 82.4
SHI03796 Sapria himalayana HOM05D004142 ORTHO05D005411 1.3e-45 188.7 191 48.7
MCO08G220 Micromonas commoda HOM05D004142 ORTHO05D005411 1.9e-44 184.9 228 42.5
Hma1.2p1_0796F.1_g219330 Hydrangea macrophylla HOM05D004142 ORTHO05D005411 2.1e-43 181.4 114 73.7
TAR318G0001 Trochodendron aralioides HOM05D004142 ORTHO05D005411 8.1e-40 169.5 154 57.1
GSVIVG01004442001 Vitis vinifera HOM05D004142 ORTHO05D005411 8.1e-40 169.5 151 59.6
Cfa024410 Carpinus fangiana HOM05D004142 ORTHO05D005411 2.6e-38 164.5 503 27.8
HPP92_025663 Vanilla planifolia HOM05D004142 ORTHO05D005411 5.8e-38 163.3 195 48.7
SEGI_26341 Sequoiadendron giganteum HOM05D004142 ORTHO05D005411 4.9e-37 160.2 128 64.1
Zm00001eb152690 Zea mays HOM05D004142 ORTHO05D000502 7.1e-36 156.4 100 74.0
Lsat_1_v5_gn_5_64620 Lactuca sativa HOM05D004142 ORTHO05D005411 2.7e-35 154.5 130 63.8
Psat3g160080 Pisum sativum HOM05D004142 ORTHO05D005411 5.1e-34 150.2 164 55.5
AagrBONN_evm.TU.Sc2ySwM_228.5299 Anthoceros agrestis HOM05D004142 ORTHO05D005411 4.3e-33 147.1 159 49.7
AagrBONN_evm.TU.Sc2ySwM_228.5300 Anthoceros agrestis HOM05D004142 ORTHO05D005411 2.4e-31 141.4 292 34.2
SEGI_03267 Sequoiadendron giganteum HOM05D004142 ORTHO05D005411 3.4e-30 137.5 115 61.7
SEGI_12604 Sequoiadendron giganteum HOM05D004142 ORTHO05D005411 7.6e-30 136.3 115 60.9
FAN27G1246 Fragaria x ananassa HOM05D004142 ORTHO05D005411 3.2e-28 131.0 126 59.5
CSS0025136 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 9.3e-28 129.4 167 47.3
BcaB07g31739 Brassica carinata HOM05D004142 ORTHO05D005411 6.6e-26 123.2 217 38.2
TPR.G40409 Trifolium pratense HOM05D004142 ORTHO05D005411 6.6e-26 123.2 65 92.3
Hma1.2p1_0151F.1_g067370 Hydrangea macrophylla HOM05D004142 ORTHO05D005411 1.1e-25 122.5 114 62.3
Zm00001eb177550 Zea mays HOM05D004142 ORTHO05D005411 1.9e-25 121.7 87 70.1
Zm00001eb282240 Zea mays HOM05D004142 ORTHO05D005411 4.3e-25 120.6 87 70.1
Eucgr.H04983 Eucalyptus grandis HOM05D004142 ORTHO05D005411 3.2e-20 104.4 70 68.6
Zm00001eb112060 Zea mays HOM05D004142 ORTHO05D005983 3.2e-20 104.4 74 71.6
BcaB07g31742 Brassica carinata HOM05D004142 ORTHO05D005411 4.6e-19 100.5 170 38.8
Oeu003432.1 Olea europaea HOM05D004142 ORTHO05D005411 7.9e-19 99.8 106 50.0
Medtr5g078810 Medicago truncatula HOM05D004142 ORTHO05D005411 1.8e-18 98.6 78 67.9
BcaC04g22984 Brassica carinata HOM05D004142 ORTHO05D005411 1.3e-16 92.4 77 63.6
SEGI_29991 Sequoiadendron giganteum HOM05D004142 ORTHO05D031210 2.8e-16 91.3 175 35.4
MD11G1014300 Malus domestica HOM05D004142 ORTHO05D005411 3.1e-15 87.8 69 65.2
TPR.G18886 Trifolium pratense HOM05D000005 ORTHO05D000012 1.5e-14 85.5 70 71.4
Lsat_1_v5_gn_5_140320 Lactuca sativa HOM05D004142 ORTHO05D036439 1.1e-12 79.3 95 51.6
Zm00001eb028530 Zea mays HOM05D004142 ORTHO05D000502 1.2e-11 75.9 48 72.9
RcHm_v2.0_Chr1g0336401 Rosa chinensis HOM05D004142 ORTHO05D005411 1.3e-08 65.9 49 65.3
RcHm_v2.0_Chr7g0239681 Rosa chinensis HOM05D004142 ORTHO05D005411 3.1e-07 61.2 48 60.4
Mapoly0118s0038 Marchantia polymorpha HOM05D004142 ORTHO05D254901 1.5e-06 58.9 172 29.7
SEGI_00997 Sequoiadendron giganteum HOM05D004142 ORTHO05D031210 7.6e-06 56.6 120 35.0


User provided reference genes

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