Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.008G160400 Phaseolus vulgaris HOM05D001118 ORTHO05D000266 8.1e-97 357.1 179 100.0
Phvul.008G234300 Phaseolus vulgaris HOM05D001118 ORTHO05D000266 6.4e-78 294.3 163 92.0
VMungo0647G0942 Vigna mungo HOM05D001118 ORTHO05D000266 3.9e-67 258.5 166 84.3
Glyma.14G069700 Glycine max HOM05D001118 ORTHO05D000266 2.6e-63 245.7 164 79.9
Glyma.02G246400 Glycine max HOM05D001118 ORTHO05D000266 2.3e-59 232.6 164 77.4
LjContig00141g0021565 Lotus japonicus HOM05D001118 ORTHO05D000266 5.0e-46 188.3 163 65.6
Ca_05860_v3 Cicer arietinum L. HOM05D001118 ORTHO05D000266 2.4e-40 169.5 179 58.7
Medtr5g079500 Medicago truncatula HOM05D001118 ORTHO05D000266 3.4e-39 165.6 171 59.1
Psat2g042200 Pisum sativum HOM05D001118 ORTHO05D000266 1.7e-38 163.3 169 59.8
TPR.G3496 Trifolium pratense HOM05D001118 ORTHO05D000266 2.9e-38 162.5 167 61.7
Glyma.11G217700 Glycine max HOM05D001118 ORTHO05D000266 7.9e-36 154.5 179 54.7
Lalb_Chr15g0084791 Lupinus albus HOM05D001118 ORTHO05D000266 5.1e-35 151.8 145 61.4
VMungo1383G3478 Vigna mungo HOM05D001118 ORTHO05D000266 2.6e-34 149.4 179 55.9
Phvul.001G231500 Phaseolus vulgaris HOM05D001118 ORTHO05D000266 3.3e-34 149.1 179 54.2
Lalb_Chr18g0053351 Lupinus albus HOM05D001118 ORTHO05D000266 9.7e-34 147.5 171 54.4
GSVIVG01030846001 Vitis vinifera HOM05D001118 ORTHO05D000266 1.5e-29 133.7 178 48.3
Glyma.18G039200 Glycine max HOM05D001118 ORTHO05D000266 2.6e-26 122.9 158 50.6
Manes.02G075100 Manihot esculenta HOM05D001118 ORTHO05D000266 7.4e-26 121.3 176 44.9
Thecc.04G119500 Theobroma cacao HOM05D001118 ORTHO05D000266 9.7e-26 120.9 175 45.7
Cpa.g.c27490 Carica papaya HOM05D001118 ORTHO05D000266 1.1e-24 117.5 172 46.5
arahy.Tifrunner.gnm1.ann1.DY9DHP Arachis hypogaea HOM05D001118 ORTHO05D000266 3.1e-24 115.9 147 51.0
Potri.004G088900 Populus trichocarpa HOM05D001118 ORTHO05D000266 7.0e-24 114.8 176 45.5
QL11p003946 Quercus lobata HOM05D001118 ORTHO05D000266 7.0e-24 114.8 174 44.8
Sabra04G0059400 Salix brachista HOM05D001118 ORTHO05D000266 2.0e-23 113.2 177 46.3
CiPaw.03G069200 Carya illinoinensis HOM05D001118 ORTHO05D000266 2.6e-23 112.8 182 44.0
Sabra17G0106700 Salix brachista HOM05D001118 ORTHO05D000266 2.6e-23 112.8 175 45.1
Cfa007835 Carpinus fangiana HOM05D001118 ORTHO05D000266 5.9e-23 111.7 174 46.0
Potri.017G126800 Populus trichocarpa HOM05D001118 ORTHO05D000266 7.7e-23 111.3 176 44.9
arahy.Tifrunner.gnm1.ann1.469CUM Arachis hypogaea HOM05D001118 ORTHO05D000266 6.5e-22 108.2 147 48.3
Prupe.3G159800 Prunus persica HOM05D001118 ORTHO05D000266 6.5e-22 108.2 150 50.0
TAR371G0408 Trochodendron aralioides HOM05D001118 ORTHO05D000266 6.5e-22 108.2 163 45.4
Atru.chr1.1835 Acer truncatum HOM05D001118 ORTHO05D000266 2.5e-21 106.3 147 48.3
Dinv14883 Davidia involucrata HOM05D001118 ORTHO05D000266 4.2e-21 105.5 164 43.9
Ciclev10013420m.g Citrus clementina HOM05D001118 ORTHO05D000266 1.2e-20 104.0 165 44.8
COL.COLO4_15729 Corchorus olitorius HOM05D001118 ORTHO05D000266 2.1e-20 103.2 137 49.6
TAR629G0361 Trochodendron aralioides HOM05D001118 ORTHO05D000266 2.3e-19 99.8 136 47.8
Gohir.D07G081700 Gossypium hirsutum HOM05D001118 ORTHO05D000266 4.0e-19 99.0 159 44.7
Gorai.001G086800 Gossypium raimondii HOM05D001118 ORTHO05D000266 4.0e-19 99.0 159 44.7
MBI09_g36923_MAGBIO Magnolia biondii HOM05D000850 ORTHO05D000266 8.8e-19 97.8 179 40.8
Gohir.A07G076900 Gossypium hirsutum HOM05D001118 ORTHO05D000266 1.2e-18 97.4 159 44.0
Duzib133G1215 Durio zibethinus HOM05D001118 ORTHO05D000266 2.6e-18 96.3 169 42.0
ClCG03G008680 Citrullus lanatus HOM05D001118 ORTHO05D000266 3.4e-18 95.9 127 48.8
Actinidia17228 Actinidia chinensis HOM05D000850 ORTHO05D000266 7.5e-18 94.7 165 43.0
Haze_14230 Corylus avellana HOM05D001118 ORTHO05D000266 7.5e-18 94.7 184 41.3
Oeu047415.1 Olea europaea HOM05D001118 ORTHO05D000266 1.7e-17 93.6 176 43.8
Oeu000906.1 Olea europaea HOM05D001118 ORTHO05D000266 2.8e-17 92.8 167 43.7
PGR004G1533 Punica granatum HOM05D001118 ORTHO05D000266 1.4e-16 90.5 178 41.6
FAN19G0362 Fragaria x ananassa HOM05D001118 ORTHO05D000266 2.4e-16 89.7 170 41.2
FAN23G0050 Fragaria x ananassa HOM05D001118 ORTHO05D000266 2.4e-16 89.7 170 41.2
Actinidia22793 Actinidia chinensis HOM05D001118 ORTHO05D000266 3.1e-16 89.4 167 41.3
AUR62023232 Chenopodium quinoa HOM05D001118 ORTHO05D000266 3.1e-16 89.4 171 42.7
Lj6g0007978 Lotus japonicus HOM05D001118 ORTHO05D000266 3.1e-16 89.4 163 40.5
Nn3g18225 Nelumbo nucifera HOM05D001118 ORTHO05D000266 3.1e-16 89.4 139 46.8
FAN26G2237 Fragaria x ananassa HOM05D001118 ORTHO05D000266 4.1e-16 89.0 170 41.2
RcHm_v2.0_Chr3g0493491 Rosa chinensis HOM05D001118 ORTHO05D000266 5.4e-16 88.6 171 40.9
DCAR_010739 Daucus carota HOM05D001118 ORTHO05D000266 7.0e-16 88.2 165 44.8
FvH4_1g28930 Fragaria vesca HOM05D001118 ORTHO05D000266 1.6e-15 87.0 170 40.6
CsaV3_5G024030 Cucumis sativus L. HOM05D001118 ORTHO05D000266 2.0e-15 86.7 130 45.4
HanXRQChr12g0375631 Helianthus annuus HOM05D001118 ORTHO05D000266 2.0e-15 86.7 164 43.9
Hma1.2p1_0283F.1_g113500 Hydrangea macrophylla HOM05D001118 ORTHO05D000266 2.0e-15 86.7 168 38.7
Eucgr.F02831 Eucalyptus grandis HOM05D001118 ORTHO05D000266 3.5e-15 85.9 177 39.0
Hund16208 Selenicereus undatus HOM05D001118 ORTHO05D000266 3.5e-15 85.9 164 43.3
Lsat_1_v5_gn_3_81200 Lactuca sativa HOM05D001118 ORTHO05D000266 4.5e-15 85.5 166 45.8
TWI53G0140 Tripterygium wilfordii HOM05D001118 ORTHO05D000266 4.5e-15 85.5 163 42.3
Gohir.1Z049555 Gossypium hirsutum HOM05D001118 ORTHO05D000266 5.9e-15 85.1 173 41.0
Gohir.A08G052650 Gossypium hirsutum HOM05D001118 ORTHO05D000266 5.9e-15 85.1 173 41.0
Peaxi162Scf00003g00218 Petunia axillaris HOM05D001118 ORTHO05D000266 5.9e-15 85.1 186 39.2
Gohir.D08G062220 Gossypium hirsutum HOM05D001118 ORTHO05D000266 7.7e-15 84.7 173 41.0
AUR62023185 Chenopodium quinoa HOM05D001118 ORTHO05D000266 1.0e-14 84.3 171 40.9
ECA246G3308 Erigeron canadensis HOM05D001118 ORTHO05D000266 1.7e-14 83.6 168 42.3
Gorai.004G064400 Gossypium raimondii HOM05D001118 ORTHO05D000266 1.7e-14 83.6 173 40.5
Rhsim08G0086300 Rhododendron simsii HOM05D001118 ORTHO05D000266 2.2e-14 83.2 163 42.9
Sed0001483 Sechium edule HOM05D001118 ORTHO05D000266 2.9e-14 82.8 95 52.6
Sc11g0008650 Simmondsia chinensis HOM05D001118 ORTHO05D000266 5.0e-14 82.0 99 54.5
MELO3C022846.2 Cucumis melo HOM05D001118 ORTHO05D000266 6.5e-14 81.6 130 43.8
Sed0027125 Sechium edule HOM05D001118 ORTHO05D000266 6.5e-14 81.6 126 48.4
CANSAT78G1632 Cannabis sativa HOM05D001118 ORTHO05D000266 8.5e-14 81.3 145 44.1
Aa31LG2G3120 Aethionema arabicum HOM05D001118 ORTHO05D000266 1.1e-13 80.9 162 38.3
AL7G46700 Arabidopsis lyrata HOM05D001118 ORTHO05D000266 1.5e-13 80.5 155 40.0
Sc10g0000770 Simmondsia chinensis HOM05D001118 ORTHO05D000266 1.5e-13 80.5 181 39.8
TWI74G0191 Tripterygium wilfordii HOM05D001118 ORTHO05D000266 2.5e-13 79.7 92 54.3
Cc07_g08110 Coffea canephora HOM05D001118 ORTHO05D000266 3.2e-13 79.3 153 41.8
Nn4g24144 Nelumbo nucifera HOM05D001118 ORTHO05D000266 3.2e-13 79.3 181 37.6
CARHR214960 Cardamine hirsuta HOM05D001118 ORTHO05D000266 4.2e-13 79.0 148 39.9
FAN28G1593 Fragaria x ananassa HOM05D001118 ORTHO05D000266 5.5e-13 78.6 170 37.6
BcaC08g46053 Brassica carinata HOM05D001118 ORTHO05D000266 7.2e-13 78.2 90 55.6
Aqoxy3G00129 Aquilegia oxysepala HOM05D001118 ORTHO05D000266 9.4e-13 77.8 136 42.6
AT5G37800 Arabidopsis thaliana HOM05D001118 ORTHO05D000266 9.4e-13 77.8 148 40.5
A07p33420 Brassica napus HOM05D001118 ORTHO05D000266 9.4e-13 77.8 90 55.6
BraA07t30969Z Brassica rapa HOM05D001118 ORTHO05D000266 9.4e-13 77.8 90 55.6
BcaB03g15267 Brassica carinata HOM05D001118 ORTHO05D000266 1.6e-12 77.0 90 54.4
C06p39820 Brassica napus HOM05D001118 ORTHO05D000266 1.6e-12 77.0 90 55.6
BolC6t39070H Brassica oleracea HOM05D001118 ORTHO05D000266 1.6e-12 77.0 90 55.6
MD09G1262000 Malus domestica HOM05D001118 ORTHO05D000266 1.6e-12 77.0 146 39.7
EL10Ac2g04474 Beta vulgaris HOM05D000850 ORTHO05D000266 2.7e-12 76.3 178 38.8
Thhalv10018927m.g Eutrema salsugineum HOM05D001118 ORTHO05D000266 6.1e-12 75.1 90 54.4
Duzib211G0448 Durio zibethinus HOM05D001118 ORTHO05D000266 8.0e-12 74.7 59 71.2
PSO478G0795 Papaver somniferum HOM05D001118 ORTHO05D000266 1.4e-11 73.9 129 43.4
SalBow3G1326 Salvia bowleyana HOM05D001118 ORTHO05D000266 1.8e-11 73.6 67 65.7
HPP92_004872 Vanilla planifolia HOM05D001118 ORTHO05D000266 1.8e-11 73.6 64 65.6
BcaB05g24176 Brassica carinata HOM05D001118 ORTHO05D000266 2.3e-11 73.2 90 53.3
Carub.0002s1250 Capsella rubella HOM05D001118 ORTHO05D000266 2.3e-11 73.2 90 54.4
PSO017G1933 Papaver somniferum HOM05D001118 ORTHO05D000266 2.3e-11 73.2 129 43.4
Sp5g21530 Schrenkiella parvula HOM05D001118 ORTHO05D000266 2.3e-11 73.2 89 50.6
BcaB02g08026 Brassica carinata HOM05D001118 ORTHO05D000266 3.0e-11 72.8 166 37.3
Dinv19016 Davidia involucrata HOM05D001118 ORTHO05D000266 3.0e-11 72.8 97 49.5
BcaC03g14750 Brassica carinata HOM05D001118 ORTHO05D000266 4.0e-11 72.4 90 52.2
A02p13650 Brassica napus HOM05D001118 ORTHO05D000266 4.0e-11 72.4 90 52.2
C02p22020 Brassica napus HOM05D001118 ORTHO05D000266 4.0e-11 72.4 90 52.2
BolC2t08333H Brassica oleracea HOM05D001118 ORTHO05D000266 4.0e-11 72.4 90 52.2
MD17G1257000 Malus domestica HOM05D001118 ORTHO05D000266 4.0e-11 72.4 148 39.2
THA.LOC104822408 Tarenaya hassleriana HOM05D001118 ORTHO05D000266 4.0e-11 72.4 165 37.6
BraA02t06423Z Brassica rapa HOM05D001118 ORTHO05D000266 5.2e-11 72.0 90 52.2
Aa31LG9G17350 Aethionema arabicum HOM05D001118 ORTHO05D000266 6.8e-11 71.6 169 38.5
AT1G66470 Arabidopsis thaliana HOM05D001118 ORTHO05D000266 6.8e-11 71.6 150 40.0
AL2G24290 Arabidopsis lyrata HOM05D001118 ORTHO05D000266 2.0e-10 70.1 150 39.3
CSS0044400 Camellia sinensis var. sinensis HOM05D001118 ORTHO05D000266 3.4e-10 69.3 57 68.4
CARHR058510 Cardamine hirsuta HOM05D001118 ORTHO05D000266 4.4e-10 68.9 90 52.2
Nitab4.5_0002664g0090 Nicotiana tabacum HOM05D001118 ORTHO05D000266 4.4e-10 68.9 178 34.8
MBI09_g19493_MAGBIO Magnolia biondii HOM05D000850 ORTHO05D000266 7.5e-10 68.2 100 48.0
Carub.0007s3298 Capsella rubella HOM05D000850 ORTHO05D000266 9.8e-10 67.8 138 39.1
CAN.G1061.47 Capsicum annuum HOM05D000004 ORTHO05D000266 9.8e-10 67.8 162 38.9
Actinidia36367 Actinidia chinensis HOM05D001118 ORTHO05D000266 1.7e-09 67.0 85 51.8
MBI10_g08560_MAGBIO Magnolia biondii HOM05D000850 ORTHO05D000266 2.2e-09 66.6 56 67.9
MBI10_g35507_MAGBIO Magnolia biondii HOM05D000850 ORTHO05D000266 2.2e-09 66.6 56 67.9
PGSC0003DMG400030650 Solanum tuberosum HOM05D001118 ORTHO05D000266 4.9e-09 65.5 179 38.0
TAR622G0055 Trochodendron aralioides HOM05D001118 ORTHO05D000266 4.9e-09 65.5 79 51.9
Zm00001eb252360 Zea mays HOM05D001118 ORTHO05D000266 4.9e-09 65.5 78 53.8
Solyc02g091440.2 Solanum lycopersicum HOM05D001118 ORTHO05D000266 6.3e-09 65.1 181 37.6
Sopen02g036060 Solanum pennellii HOM05D001118 ORTHO05D000266 6.3e-09 65.1 180 37.8
HPP92_026412 Vanilla planifolia HOM05D001118 ORTHO05D000266 6.3e-09 65.1 113 46.9
Nitab4.5_0003360g0050 Nicotiana tabacum HOM05D001118 ORTHO05D000266 8.3e-09 64.7 173 34.7
Os02g0710300 Oryza sativa ssp. japonica HOM05D001118 ORTHO05D000266 3.1e-08 62.8 68 55.9
Migut.H00272 Erythranthe guttata HOM05D001118 ORTHO05D000266 4.1e-08 62.4 60 65.0
THA.LOC104805604 Tarenaya hassleriana HOM05D001118 ORTHO05D000266 7.0e-08 61.6 171 35.7
SGA_v2.0_scaffold149G36497 Striga asiatica HOM05D001118 ORTHO05D000266 1.2e-07 60.8 65 61.5
ATR0598G147 Amborella trichopoda HOM05D001118 ORTHO05D000266 1.6e-07 60.5 48 66.7
Thhalv10028239m.g Eutrema salsugineum HOM05D001118 ORTHO05D000266 2.3e-06 56.6 165 33.3
Mapoly0039s0003 Marchantia polymorpha HOM05D001118 ORTHO05D000266 6.6e-06 55.1 48 58.3
Aa31sc49G90 Aethionema arabicum HOM05D001118 ORTHO05D000266 8.6e-06 54.7 89 42.7
SMO361G0328 Selaginella moellendorffii HOM05D001118 ORTHO05D000266 8.6e-06 54.7 87 40.2


User provided reference genes

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