Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G200600 Phaseolus vulgaris HOM05D002444 ORTHO05D004748 2.4e-87 325.5 163 100.0
VMungo0720G0625 Vigna mungo HOM05D002444 ORTHO05D004748 2.2e-69 265.8 163 82.2
Glyma.10G147900 Glycine max HOM05D002444 ORTHO05D004748 7.9e-67 257.3 158 81.0
Lj5g0002521 Lotus japonicus HOM05D002444 ORTHO05D004748 2.9e-61 238.8 162 71.0
Medtr1g083900 Medicago truncatula HOM05D002444 ORTHO05D004748 1.4e-55 219.9 163 69.3
TPR.G2633 Trifolium pratense HOM05D002444 ORTHO05D004748 5.0e-53 211.5 159 64.8
arahy.Tifrunner.gnm1.ann1.JXUF4U Arachis hypogaea HOM05D002444 ORTHO05D004748 6.7e-50 201.1 154 64.3
arahy.Tifrunner.gnm1.ann1.1Z9C7T Arachis hypogaea HOM05D002444 ORTHO05D004748 7.4e-49 197.6 154 63.0
Lalb_Chr18g0046061 Lupinus albus HOM05D002444 ORTHO05D004748 1.8e-47 193.0 165 59.4
QL03p018315 Quercus lobata HOM05D002444 ORTHO05D004748 2.1e-43 179.5 154 57.1
CiPaw.07G028300 Carya illinoinensis HOM05D002444 ORTHO05D004748 6.1e-43 177.9 154 55.2
Psat0s3089g0080 Pisum sativum HOM05D002444 ORTHO05D004748 8.8e-42 174.1 126 67.5
Cfa006686 Carpinus fangiana HOM05D002444 ORTHO05D004748 7.5e-41 171.0 150 57.3
Prupe.6G314800 Prunus persica HOM05D002444 ORTHO05D004748 1.7e-37 159.8 163 50.3
Manes.09G176000 Manihot esculenta HOM05D002444 ORTHO05D004748 1.9e-36 156.4 150 52.0
Gorai.007G304800 Gossypium raimondii HOM05D002444 ORTHO05D004748 4.7e-35 151.8 126 52.4
Gohir.D11G282100 Gossypium hirsutum HOM05D002444 ORTHO05D004748 6.1e-35 151.4 126 52.4
Gohir.A11G272000 Gossypium hirsutum HOM05D002444 ORTHO05D004748 3.0e-34 149.1 126 51.6
RcHm_v2.0_Chr3g0456891 Rosa chinensis HOM05D002444 ORTHO05D004748 3.0e-34 149.1 151 52.3
FvH4_6g07260 Fragaria vesca HOM05D002444 ORTHO05D004748 1.5e-33 146.7 159 49.1
FAN14G2258 Fragaria x ananassa HOM05D002444 ORTHO05D004748 4.4e-33 145.2 151 51.0
TAR362G0953 Trochodendron aralioides HOM05D002444 ORTHO05D004748 9.8e-33 144.1 154 44.8
Duzib177G0976 Durio zibethinus HOM05D002444 ORTHO05D004748 1.3e-32 143.7 143 47.6
FAN09G2263 Fragaria x ananassa HOM05D002444 ORTHO05D004748 1.3e-32 143.7 148 50.0
Thecc.05G321400 Theobroma cacao HOM05D002444 ORTHO05D004748 1.3e-32 143.7 139 48.9
CsaV3_1G038300 Cucumis sativus L. HOM05D002444 ORTHO05D004748 4.8e-32 141.7 120 55.0
FAN05G3647 Fragaria x ananassa HOM05D002444 ORTHO05D004748 6.3e-32 141.4 152 49.3
Glyma.15G143900 Glycine max HOM05D002444 ORTHO05D004748 6.3e-32 141.4 107 57.9
Sed0020654 Sechium edule HOM05D002444 ORTHO05D004748 6.3e-32 141.4 121 52.9
Atru.chr2.152 Acer truncatum HOM05D002444 ORTHO05D004748 8.3e-32 141.0 148 48.0
MBI18_g28459_MAGBIO Magnolia biondii HOM05D002444 ORTHO05D004748 1.1e-31 140.6 156 46.8
MD04G1195000 Malus domestica HOM05D002444 ORTHO05D004748 1.1e-31 140.6 157 47.8
Glyma.09G038800 Glycine max HOM05D002444 ORTHO05D004748 1.2e-30 137.1 107 56.1
Psat1g159880 Pisum sativum HOM05D002444 ORTHO05D004748 2.7e-30 136.0 110 53.6
Potri.005G019200 Populus trichocarpa HOM05D002444 ORTHO05D004748 2.7e-30 136.0 131 50.4
GSVIVG01035038001 Vitis vinifera HOM05D002444 ORTHO05D004748 3.5e-30 135.6 117 53.8
PSO761G0121 Papaver somniferum HOM05D002444 ORTHO05D004748 5.9e-30 134.8 183 40.4
MELO3C029286.2 Cucumis melo HOM05D002444 ORTHO05D004748 7.7e-30 134.4 113 54.0
PSO210G2776 Papaver somniferum HOM05D002444 ORTHO05D004748 1.0e-29 134.0 186 40.3
CiPaw.01G141700 Carya illinoinensis HOM05D002444 ORTHO05D004748 2.3e-29 132.9 107 54.2
TWI09G1526 Tripterygium wilfordii HOM05D002444 ORTHO05D004748 5.0e-29 131.7 129 48.1
FvH4_4g19330 Fragaria vesca HOM05D002444 ORTHO05D004748 6.6e-29 131.3 156 42.3
FAN12G3242 Fragaria x ananassa HOM05D002444 ORTHO05D004748 8.6e-29 131.0 156 41.7
TWI73G0575 Tripterygium wilfordii HOM05D002444 ORTHO05D004748 8.6e-29 131.0 129 45.7
VMungo1309G0802 Vigna mungo HOM05D002444 ORTHO05D004748 1.1e-28 130.6 101 55.4
Haze_01081 Corylus avellana HOM05D002444 ORTHO05D004748 1.5e-28 130.2 107 51.4
QL02p088728 Quercus lobata HOM05D002444 ORTHO05D004748 1.5e-28 130.2 116 49.1
DCAR_027017 Daucus carota HOM05D002444 ORTHO05D004748 1.9e-28 129.8 117 47.9
Actinidia16853 Actinidia chinensis HOM05D002444 ORTHO05D004748 2.5e-28 129.4 144 43.1
FAN12G1068 Fragaria x ananassa HOM05D002444 ORTHO05D004748 2.5e-28 129.4 133 45.9
ATR0706G131 Amborella trichopoda HOM05D002444 ORTHO05D004748 3.3e-28 129.0 114 50.9
FAN07G2635 Fragaria x ananassa HOM05D002444 ORTHO05D004748 3.3e-28 129.0 133 45.1
Actinidia40354 Actinidia chinensis HOM05D002444 ORTHO05D004748 4.2e-28 128.6 105 52.4
CSS0013068 Camellia sinensis var. sinensis HOM05D002444 ORTHO05D004748 7.2e-28 127.9 107 51.4
Lj6g0008376 Lotus japonicus HOM05D002444 ORTHO05D004748 7.2e-28 127.9 107 49.5
MD13G1157600 Malus domestica HOM05D002444 ORTHO05D004748 7.2e-28 127.9 108 50.0
DCAR_023333 Daucus carota HOM05D002444 ORTHO05D004748 1.2e-27 127.1 103 50.5
Lalb_Chr18g0058901 Lupinus albus HOM05D002444 ORTHO05D004748 1.6e-27 126.7 107 50.5
Medtr2g034760 Medicago truncatula HOM05D002444 ORTHO05D004748 1.6e-27 126.7 107 49.5
Lalb_Chr20g0120971 Lupinus albus HOM05D002444 ORTHO05D004748 2.1e-27 126.3 107 49.5
MD16G1158500 Malus domestica HOM05D002444 ORTHO05D004748 2.1e-27 126.3 107 47.7
Phvul.009G254100 Phaseolus vulgaris HOM05D002444 ORTHO05D004748 2.1e-27 126.3 105 50.5
Prupe.1G123300 Prunus persica HOM05D002444 ORTHO05D004748 2.1e-27 126.3 115 47.8
Dinv44314 Davidia involucrata HOM05D002444 ORTHO05D004748 2.8e-27 125.9 119 49.6
ECA233G1761 Erigeron canadensis HOM05D002444 ORTHO05D004748 3.6e-27 125.6 106 50.0
Atru.chr4.2965 Acer truncatum HOM05D002444 ORTHO05D004748 4.7e-27 125.2 117 46.2
Gorai.011G194700 Gossypium raimondii HOM05D002444 ORTHO05D004748 4.7e-27 125.2 136 41.2
Gohir.D10G174000 Gossypium hirsutum HOM05D002444 ORTHO05D004748 6.1e-27 124.8 136 41.2
Gohir.A10G167900 Gossypium hirsutum HOM05D002444 ORTHO05D004748 8.0e-27 124.4 136 41.2
Hma1.2p1_0013F.1_g008880 Hydrangea macrophylla HOM05D002444 ORTHO05D004748 8.0e-27 124.4 154 44.2
QL06p011459 Quercus lobata HOM05D002444 ORTHO05D004748 8.0e-27 124.4 107 50.5
FAN02G4223 Fragaria x ananassa HOM05D002444 ORTHO05D004748 1.0e-26 124.0 120 53.3
COL.COLO4_34661 Corchorus olitorius HOM05D001121 ORTHO05D009235 1.4e-26 123.6 105 46.7
CsaV3_6G022510 Cucumis sativus L. HOM05D002444 ORTHO05D004748 1.8e-26 123.2 103 48.5
Hund07137 Selenicereus undatus HOM05D002444 ORTHO05D004748 1.8e-26 123.2 126 49.2
Aqoxy2G02793 Aquilegia oxysepala HOM05D002444 ORTHO05D004748 4.0e-26 122.1 154 39.6
COL.COLO4_04145 Corchorus olitorius HOM05D001136 ORTHO05D001144 4.0e-26 122.1 112 50.0
PSO170G5203 Papaver somniferum HOM05D002444 ORTHO05D004748 5.2e-26 121.7 155 40.6
AUR62005275 Chenopodium quinoa HOM05D002444 ORTHO05D004748 8.9e-26 120.9 123 46.3
Manes.03G202000 Manihot esculenta HOM05D002444 ORTHO05D004748 8.9e-26 120.9 108 47.2
DCAR_001718 Daucus carota HOM05D002444 ORTHO05D004748 1.2e-25 120.6 101 49.5
Sed0022311 Sechium edule HOM05D002444 ORTHO05D004748 1.2e-25 120.6 144 42.4
Thecc.04G296000 Theobroma cacao HOM05D002444 ORTHO05D004748 1.2e-25 120.6 151 40.4
PGR004G0577 Punica granatum HOM05D002444 ORTHO05D004748 1.5e-25 120.2 158 38.0
AUR62000681 Chenopodium quinoa HOM05D002444 ORTHO05D004748 2.6e-25 119.4 132 43.9
Sabra05G0025700 Salix brachista HOM05D002444 ORTHO05D004748 3.4e-25 119.0 89 57.3
vmacro08072 Vaccinium macrocarpon HOM05D002444 ORTHO05D009235 4.4e-25 118.6 127 42.5
Nn3g21645 Nelumbo nucifera HOM05D002444 ORTHO05D004748 7.5e-25 117.9 120 44.2
ClCG06G004730 Citrullus lanatus HOM05D002444 ORTHO05D004748 9.8e-25 117.5 103 47.6
ECA246G3411 Erigeron canadensis HOM05D002444 ORTHO05D004748 9.8e-25 117.5 107 50.5
Cc03_g01110 Coffea canephora HOM05D002444 ORTHO05D004748 1.3e-24 117.1 100 51.0
Nn4g25640 Nelumbo nucifera HOM05D002444 ORTHO05D004748 1.3e-24 117.1 133 45.1
Peaxi162Scf00065g00322 Petunia axillaris HOM05D002444 ORTHO05D004748 2.2e-24 116.3 94 52.1
Potri.008G108400 Populus trichocarpa HOM05D002444 ORTHO05D004748 2.8e-24 115.9 105 43.8
Sabra08G0082100 Salix brachista HOM05D002444 ORTHO05D009235 2.8e-24 115.9 103 45.6
Thhalv10023988m.g Eutrema salsugineum HOM05D002444 ORTHO05D004748 3.7e-24 115.5 95 52.6
Carub.0002s0784 Capsella rubella HOM05D002444 ORTHO05D004748 4.9e-24 115.2 109 47.7
Rhsim04G0232700 Rhododendron simsii HOM05D002444 ORTHO05D004748 4.9e-24 115.2 117 43.6
THA.LOC104816880 Tarenaya hassleriana HOM05D002444 ORTHO05D004748 4.9e-24 115.2 92 53.3
AT1G56320 Arabidopsis thaliana HOM05D002444 ORTHO05D004748 6.3e-24 114.8 95 52.6
SalBow5G4491 Salvia bowleyana HOM05D000356 ORTHO05D000265 6.3e-24 114.8 130 40.8
Duzib151G1201 Durio zibethinus HOM05D002444 ORTHO05D004748 8.3e-24 114.4 136 41.2
BcaC09g49563 Brassica carinata HOM05D002444 ORTHO05D004748 1.1e-23 114.0 133 42.1
A01p27390 Brassica napus HOM05D002444 ORTHO05D004748 1.1e-23 114.0 133 42.1
BraA01t02879Z Brassica rapa HOM05D002444 ORTHO05D004748 1.1e-23 114.0 133 42.1
Ciclev10003857m.g Citrus clementina HOM05D002444 ORTHO05D004748 1.1e-23 114.0 95 53.7
Sp2g06560 Schrenkiella parvula HOM05D002444 ORTHO05D004748 1.1e-23 114.0 95 52.6
Dinv02080 Davidia involucrata HOM05D000043 ORTHO05D000600 1.4e-23 113.6 124 44.4
Migut.N00054 Erythranthe guttata HOM05D002444 ORTHO05D004748 1.4e-23 113.6 93 50.5
AL1G65930 Arabidopsis lyrata HOM05D002444 ORTHO05D004748 1.8e-23 113.2 95 52.6
arahy.Tifrunner.gnm1.ann1.TF3LVT Arachis hypogaea HOM05D002444 ORTHO05D004748 1.8e-23 113.2 107 46.7
BolC1t03479H Brassica oleracea HOM05D001136 ORTHO05D004748 2.4e-23 112.8 95 51.6
RcHm_v2.0_Chr4g0424351 Rosa chinensis HOM05D002444 ORTHO05D004748 2.4e-23 112.8 99 47.5
BcaB04g20158 Brassica carinata HOM05D002444 ORTHO05D004748 3.2e-23 112.5 95 51.6
Sopen01g026460 Solanum pennellii HOM05D002444 ORTHO05D004748 4.1e-23 112.1 119 44.5
CARHR289860 Cardamine hirsuta HOM05D002444 ORTHO05D004748 5.4e-23 111.7 95 50.5
Sp2g19700 Schrenkiella parvula HOM05D002444 ORTHO05D004748 5.4e-23 111.7 113 42.5
Hma1.2p1_0078F.1_g040160 Hydrangea macrophylla HOM05D002444 ORTHO05D004748 7.0e-23 111.3 154 39.6
MSTRG.3869 Avicennia marina HOM05D002444 ORTHO05D004748 1.2e-22 110.5 94 50.0
Solyc01g060260.4 Solanum lycopersicum HOM05D002444 ORTHO05D004748 1.2e-22 110.5 119 42.9
PGSC0003DMG403007553 Solanum tuberosum HOM05D002444 ORTHO05D004748 1.2e-22 110.5 119 42.9
HanXRQChr05g0148181 Helianthus annuus HOM05D002444 ORTHO05D004748 1.6e-22 110.2 111 46.8
Ciclev10006963m.g Citrus clementina HOM05D002444 ORTHO05D004748 2.0e-22 109.8 135 40.7
Thhalv10004800m.g Eutrema salsugineum HOM05D002444 ORTHO05D004748 2.0e-22 109.8 114 42.1
Lsat_1_v5_gn_6_114241 Lactuca sativa HOM05D002444 ORTHO05D004748 2.0e-22 109.8 117 46.2
Lj6A687G30 Lonicera japonica HOM05D002444 ORTHO05D004748 2.7e-22 109.4 103 46.6
Zm00001eb014450 Zea mays HOM05D002444 ORTHO05D004748 2.7e-22 109.4 115 43.5
AL8G23000 Arabidopsis lyrata HOM05D002444 ORTHO05D004748 4.5e-22 108.6 102 43.1
CARHR182180 Cardamine hirsuta HOM05D002444 ORTHO05D004748 5.9e-22 108.2 112 43.8
Aa31LG11G7920 Aethionema arabicum HOM05D002444 ORTHO05D004748 7.8e-22 107.8 106 48.1
Haze_04077 Corylus avellana HOM05D002444 ORTHO05D004748 7.8e-22 107.8 66 72.7
AT5G49350 Arabidopsis thaliana HOM05D002444 ORTHO05D004748 1.3e-21 107.1 119 41.2
BcaC06g30700 Brassica carinata HOM05D000446 ORTHO05D000321 1.3e-21 107.1 102 45.1
Carub.0008s0925 Capsella rubella HOM05D002444 ORTHO05D004748 1.3e-21 107.1 102 43.1
Lsat_1_v5_gn_2_45680 Lactuca sativa HOM05D002444 ORTHO05D004748 1.3e-21 107.1 103 47.6
CAN.G197.18 Capsicum annuum HOM05D002444 ORTHO05D004748 1.7e-21 106.7 101 45.5
TAR633G0381 Trochodendron aralioides HOM05D002444 ORTHO05D004748 1.7e-21 106.7 88 53.4
Sc16g0008950 Simmondsia chinensis HOM05D002444 ORTHO05D004748 2.9e-21 105.9 119 42.9
Sc19g0003190 Simmondsia chinensis HOM05D002444 ORTHO05D004748 2.9e-21 105.9 105 43.8
THA.LOC109116877 Tarenaya hassleriana HOM05D002444 ORTHO05D004748 2.9e-21 105.9 103 47.6
A06p38390 Brassica napus HOM05D002444 ORTHO05D004748 3.9e-21 105.5 124 41.9
BraA06t26753Z Brassica rapa HOM05D002444 ORTHO05D004748 3.9e-21 105.5 124 41.9
Eucgr.H04030 Eucalyptus grandis HOM05D002444 ORTHO05D004748 3.9e-21 105.5 93 49.5
Nitab4.5_0000169g0080 Nicotiana tabacum HOM05D002444 ORTHO05D004748 3.9e-21 105.5 86 50.0
BolC7t44514H Brassica oleracea HOM05D002444 ORTHO05D004748 6.6e-21 104.8 102 43.1
Nitab4.5_0005333g0030 Nicotiana tabacum HOM05D002444 ORTHO05D004748 8.6e-21 104.4 85 51.8
BcaNung02598 Brassica carinata HOM05D002444 ORTHO05D004748 1.1e-20 104.0 102 43.1
C07p39870 Brassica napus HOM05D000446 ORTHO05D000321 1.1e-20 104.0 102 43.1
Migut.G00098 Erythranthe guttata HOM05D002444 ORTHO05D004748 1.5e-20 103.6 120 37.5
C01p35210 Brassica napus HOM05D002444 ORTHO05D004748 3.3e-20 102.4 123 41.5
Os03g0304100 Oryza sativa ssp. japonica HOM05D002444 ORTHO05D004748 4.3e-20 102.1 181 35.9
EL10Ac4g09827 Beta vulgaris HOM05D002444 ORTHO05D004748 5.6e-20 101.7 88 50.0
Os01g0253800 Oryza sativa ssp. japonica HOM05D002444 ORTHO05D004748 5.6e-20 101.7 133 36.8
SGA_v2.0_scaffold18G08390 Striga asiatica HOM05D002444 ORTHO05D009235 1.6e-19 100.1 103 44.7
unitig_748.g8711 Utricularia gibba HOM05D002444 ORTHO05D004748 1.6e-19 100.1 97 39.2
Aa31LG2G11540 Aethionema arabicum HOM05D002444 ORTHO05D004748 2.1e-19 99.8 92 46.7
Ah.04g154860 Amaranthus hybridus HOM05D002444 ORTHO05D009235 3.6e-19 99.0 121 38.0
EL10Ac3g04919 Beta vulgaris HOM05D002444 ORTHO05D009235 4.7e-19 98.6 93 45.2
SalBow8G4791 Salvia bowleyana HOM05D002444 ORTHO05D004748 1.8e-18 96.7 121 36.4
AUR62016142 Chenopodium quinoa HOM05D002444 ORTHO05D004748 3.1e-18 95.9 96 42.7
AUR62042953 Chenopodium quinoa HOM05D002444 ORTHO05D009235 8.9e-18 94.4 93 43.0
Hund11954 Selenicereus undatus HOM05D002444 ORTHO05D004748 1.2e-17 94.0 96 39.6
SalBow8G0484 Salvia bowleyana HOM05D002444 ORTHO05D004748 2.0e-17 93.2 121 36.4
SEGI_31666 Sequoiadendron giganteum HOM05D002444 ORTHO05D004748 2.0e-17 93.2 94 45.7
Hund03099 Selenicereus undatus HOM05D002444 ORTHO05D004748 3.4e-17 92.4 104 40.4
Zm00001eb127660 Zea mays HOM05D002444 ORTHO05D004748 2.2e-16 89.7 162 35.2
Lj6A687G28 Lonicera japonica HOM05D002444 ORTHO05D004748 8.3e-16 87.8 105 43.8
SHI00165 Sapria himalayana HOM05D002444 ORTHO05D004748 5.4e-15 85.1 97 40.2
HPP92_021761 Vanilla planifolia HOM05D002444 ORTHO05D004748 2.0e-14 83.2 94 36.2
HPP92_026765 Vanilla planifolia HOM05D002444 ORTHO05D004748 7.8e-14 81.3 131 32.8
arahy.Tifrunner.gnm1.ann1.84BLH7 Arachis hypogaea HOM05D002444 ORTHO05D004748 5.0e-13 78.6 83 42.2
Os05g0355900 Oryza sativa ssp. japonica HOM05D002444 ORTHO05D004748 3.6e-11 72.4 123 30.9
Sabra05G0012900 Salix brachista HOM05D002444 ORTHO05D004748 1.1e-10 70.9 126 35.7
arahy.Tifrunner.gnm1.ann1.YQC48T Arachis hypogaea HOM05D002444 ORTHO05D004748 4.0e-10 68.9 55 52.7
Cfa015454 Carpinus fangiana HOM05D002444 ORTHO05D004748 1.9e-07 60.1 49 49.0
Lsat_1_v5_gn_9_13661 Lactuca sativa HOM05D008739 ORTHO05D010871 1.9e-07 60.1 66 36.4
Ciclev10003751m.g Citrus clementina HOM05D002444 ORTHO05D004748 4.1e-07 58.9 72 43.1
CANSAT54G2708 Cannabis sativa HOM05D002444 ORTHO05D004748 9.2e-07 57.8 126 31.0
AagrBONN_evm.TU.Sc2ySwM_344.1126 Anthoceros agrestis HOM05D002444 ORTHO05D004748 2.7e-06 56.2 126 29.4
Cpa.g.sc2.284 Carica papaya HOM05D008739 ORTHO05D010871 6.0e-06 55.1 70 40.0
Actinidia31640 Actinidia chinensis HOM05D008739 ORTHO05D010871 7.8e-06 54.7 105 32.4
Thecc.10G185700 Theobroma cacao HOM05D008739 ORTHO05D010871 7.8e-06 54.7 86 36.0


User provided reference genes

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