Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G156300 Phaseolus vulgaris HOM05D006778 ORTHO05D008341 3.7e-67 258.1 130 100.0
Glyma.10G042900 Glycine max HOM05D006778 ORTHO05D008341 2.8e-54 215.3 134 84.3
Glyma.13G130200 Glycine max HOM05D006778 ORTHO05D008341 1.0e-48 196.8 128 78.9
Lj3g0024250 Lotus japonicus HOM05D006778 ORTHO05D008341 7.3e-47 190.7 134 74.6
Lj5g0022938 Lotus japonicus HOM05D006778 ORTHO05D008341 1.6e-46 189.5 134 75.4
Medtr1g069150 Medicago truncatula HOM05D006778 ORTHO05D008341 1.2e-44 183.3 150 65.3
Lalb_Chr21g0314231 Lupinus albus HOM05D006778 ORTHO05D008341 1.5e-44 183.0 135 72.6
Psat6g064720 Pisum sativum HOM05D006778 ORTHO05D008341 1.6e-41 172.9 149 59.7
arahy.Tifrunner.gnm1.ann1.01AYHN Arachis hypogaea HOM05D006778 ORTHO05D008341 3.0e-40 168.7 132 65.9
arahy.Tifrunner.gnm1.ann1.PE83GC Arachis hypogaea HOM05D006778 ORTHO05D008341 6.6e-40 167.5 132 65.9
SGA_v2.0_scaffold8G04666 Striga asiatica HOM05D006778 ORTHO05D008341 1.9e-39 166.0 134 62.7
TPR.G33801 Trifolium pratense HOM05D006778 ORTHO05D008341 5.6e-39 164.5 146 60.3
Actinidia37573 Actinidia chinensis HOM05D006778 ORTHO05D008341 1.1e-37 160.2 133 61.7
CiPaw.03G152900 Carya illinoinensis HOM05D006778 ORTHO05D008341 2.0e-36 156.0 134 62.7
Nitab4.5_0001740g0070 Nicotiana tabacum HOM05D006778 ORTHO05D008341 2.6e-36 155.6 136 59.6
FAN15G2222 Fragaria x ananassa HOM05D006778 ORTHO05D008341 4.4e-36 154.8 133 63.2
Nitab4.5_0003180g0010 Nicotiana tabacum HOM05D006778 ORTHO05D008341 1.7e-35 152.9 136 58.1
TAR362G0656 Trochodendron aralioides HOM05D006778 ORTHO05D008341 1.7e-35 152.9 129 62.0
GSVIVG01028519001 Vitis vinifera HOM05D006778 ORTHO05D008341 3.7e-35 151.8 131 61.1
Prupe.8G209000 Prunus persica HOM05D006778 ORTHO05D008341 6.4e-35 151.0 131 61.1
Sed0012724 Sechium edule HOM05D006778 ORTHO05D008341 6.4e-35 151.0 130 59.2
RcHm_v2.0_Chr6g0285481 Rosa chinensis HOM05D006778 ORTHO05D008341 8.3e-35 150.6 144 57.6
Manes.12G043800 Manihot esculenta HOM05D006778 ORTHO05D008341 2.4e-34 149.1 130 60.0
CiPaw.04G108200 Carya illinoinensis HOM05D006778 ORTHO05D008341 3.2e-34 148.7 161 52.2
CAN.G941.43 Capsicum annuum HOM05D006778 ORTHO05D008341 5.4e-34 147.9 134 54.5
Migut.D00505 Erythranthe guttata HOM05D006778 ORTHO05D008341 7.0e-34 147.5 131 56.5
FvH4_2g19780 Fragaria vesca HOM05D006778 ORTHO05D008341 1.6e-33 146.4 151 55.6
ClCG07G001620 Citrullus lanatus HOM05D006778 ORTHO05D008341 4.6e-33 144.8 131 58.8
Cc01_g17420 Coffea canephora HOM05D006778 ORTHO05D008341 1.0e-32 143.7 130 57.7
Cfa002523 Carpinus fangiana HOM05D006778 ORTHO05D008341 1.3e-32 143.3 128 61.7
PGR044G1830 Punica granatum HOM05D006778 ORTHO05D008341 6.6e-32 141.0 130 53.8
vmacro02733 Vaccinium macrocarpon HOM05D006778 ORTHO05D008341 8.6e-32 140.6 163 50.3
ECA247G0226 Erigeron canadensis HOM05D000070 ORTHO05D003190 1.1e-31 140.2 130 59.2
Sabra02G0191900 Salix brachista HOM05D006778 ORTHO05D008341 1.1e-31 140.2 131 58.0
QL07p037469 Quercus lobata HOM05D006778 ORTHO05D008341 1.5e-31 139.8 163 50.9
MELO3C026499.2 Cucumis melo HOM05D006778 ORTHO05D008341 1.9e-31 139.4 132 57.6
CsaV3_6G036140 Cucumis sativus L. HOM05D006778 ORTHO05D008341 1.9e-31 139.4 132 56.8
Solyc06g008020.3 Solanum lycopersicum HOM05D006778 ORTHO05D008341 3.3e-31 138.7 138 50.7
AUR62031811 Chenopodium quinoa HOM05D006778 ORTHO05D008341 5.6e-31 137.9 168 44.6
BcaC09g51658 Brassica carinata HOM05D006778 ORTHO05D008341 7.3e-31 137.5 152 50.7
Sopen06g002860 Solanum pennellii HOM05D006778 ORTHO05D008341 9.5e-31 137.1 138 50.0
Nn1g03098 Nelumbo nucifera HOM05D006778 ORTHO05D008341 1.2e-30 136.7 153 51.0
BcaNung01362 Brassica carinata HOM05D006778 ORTHO05D008341 1.6e-30 136.3 152 52.6
MD05G1182200 Malus domestica HOM05D006778 ORTHO05D008341 1.6e-30 136.3 132 59.1
THA.LOC104820057 Tarenaya hassleriana HOM05D006778 ORTHO05D008341 1.6e-30 136.3 130 55.4
Rhsim13G0042100 Rhododendron simsii HOM05D006778 ORTHO05D008341 2.1e-30 136.0 129 55.8
DCAR_012626 Daucus carota HOM05D006778 ORTHO05D008341 3.6e-30 135.2 142 54.9
Sp7g26820 Schrenkiella parvula HOM05D006778 ORTHO05D008341 3.6e-30 135.2 152 48.7
CANSAT01G2408 Cannabis sativa HOM05D006778 ORTHO05D008341 4.7e-30 134.8 150 50.0
CANSAT01G3118 Cannabis sativa HOM05D006778 ORTHO05D008341 4.7e-30 134.8 154 48.7
VMungo0720G2677 Vigna mungo HOM05D006778 ORTHO05D008341 1.1e-29 133.7 93 81.7
Aqoxy2G03836 Aquilegia oxysepala HOM05D006778 ORTHO05D008341 1.4e-29 133.3 128 55.5
EL10Ac7g17819 Beta vulgaris HOM05D006778 ORTHO05D008341 1.8e-29 132.9 140 50.7
ATR0787G018 Amborella trichopoda HOM05D006778 ORTHO05D008341 4.0e-29 131.7 130 53.1
Thecc.01G232400 Theobroma cacao HOM05D006778 ORTHO05D008341 4.0e-29 131.7 173 44.5
CARHR236610 Cardamine hirsuta HOM05D006778 ORTHO05D008341 5.2e-29 131.3 169 46.2
Potri.002G252700 Populus trichocarpa HOM05D006778 ORTHO05D008341 1.2e-28 130.2 126 55.6
Cpa.g.sc8.198 Carica papaya HOM05D006778 ORTHO05D008341 1.5e-28 129.8 128 53.9
Pp3c19_5220 Physcomitrium patens HOM05D006778 ORTHO05D008341 4.4e-28 128.3 130 52.3
Thhalv10026155m.g Eutrema salsugineum HOM05D006778 ORTHO05D008341 5.8e-28 127.9 158 48.1
FAN24G1005 Fragaria x ananassa HOM05D006778 ORTHO05D008341 7.5e-28 127.5 149 50.3
Duzib133G1327 Durio zibethinus HOM05D006778 ORTHO05D008341 1.3e-27 126.7 170 42.9
HPP92_014070 Vanilla planifolia HOM05D006778 ORTHO05D008341 2.9e-27 125.6 129 53.5
COL.COLO4_28579 Corchorus olitorius HOM05D006778 ORTHO05D008341 8.3e-27 124.0 159 44.0
AT4G28820 Arabidopsis thaliana HOM05D006778 ORTHO05D008341 1.4e-26 123.2 159 45.9
Gohir.D08G211201 Gossypium hirsutum HOM05D006778 ORTHO05D008341 2.4e-26 122.5 157 45.2
PGR044G0410 Punica granatum HOM05D006778 ORTHO05D008341 5.4e-26 121.3 126 49.2
TWI14G0487 Tripterygium wilfordii HOM05D006778 ORTHO05D008341 2.7e-25 119.0 188 42.6
A01p09090 Brassica napus HOM05D006778 ORTHO05D008341 3.5e-25 118.6 163 45.4
Gorai.004G223900 Gossypium raimondii HOM05D006778 ORTHO05D008341 3.5e-25 118.6 171 43.3
Carub.0007s1182 Capsella rubella HOM05D006778 ORTHO05D008341 7.8e-25 117.5 159 44.0
Gohir.A08G193200 Gossypium hirsutum HOM05D006778 ORTHO05D008341 1.3e-24 116.7 166 44.0
BolC1t01026H Brassica oleracea HOM05D006778 ORTHO05D008341 3.0e-24 115.5 164 45.1
AL7G23670 Arabidopsis lyrata HOM05D006778 ORTHO05D008341 2.5e-23 112.5 187 40.1
C01p10640 Brassica napus HOM05D006778 ORTHO05D008341 9.5e-23 110.5 161 44.7
CDE06G1811 Ceratophyllum demersum HOM05D006778 ORTHO05D008341 2.1e-22 109.4 151 41.1
BraA01t00857Z Brassica rapa HOM05D006778 ORTHO05D008341 6.2e-22 107.8 160 43.1
CSS0042066 Camellia sinensis var. sinensis HOM05D006778 ORTHO05D008341 8.1e-22 107.5 145 44.1
Dinv19236 Davidia involucrata HOM05D006778 ORTHO05D008341 8.1e-22 107.5 136 46.3
CDE07G0370 Ceratophyllum demersum HOM05D006778 ORTHO05D008341 1.1e-21 107.1 129 45.0
BolC7t46124H Brassica oleracea HOM05D006778 ORTHO05D008341 5.2e-21 104.8 201 37.8
Mapoly0102s0014 Marchantia polymorpha HOM05D006778 ORTHO05D008341 8.9e-21 104.0 139 43.9
Ca_09622_v3 Cicer arietinum L. HOM05D006778 ORTHO05D008341 2.6e-20 102.4 67 77.6
Zm00001eb149030 Zea mays HOM05D006778 ORTHO05D008341 4.4e-20 101.7 129 42.6
C07p56450 Brassica napus HOM05D006778 ORTHO05D008341 2.2e-19 99.4 201 36.8
MSTRG.18371 Avicennia marina HOM05D006778 ORTHO05D008341 1.1e-18 97.1 131 43.5
AagrBONN_evm.TU.Sc2ySwM_228.3325 Anthoceros agrestis HOM05D006778 ORTHO05D008341 1.4e-18 96.7 130 43.1
CBR_g29688 Chara braunii HOM05D006778 ORTHO05D008341 1.9e-18 96.3 136 41.9
SMO111G0074 Selaginella moellendorffii HOM05D006778 ORTHO05D008341 4.2e-18 95.1 128 42.2
Haze_24755 Corylus avellana HOM05D006778 ORTHO05D008341 7.1e-18 94.4 88 58.0
Haze_24757 Corylus avellana HOM05D006778 ORTHO05D008341 7.1e-18 94.4 88 58.0
A03p58430 Brassica napus HOM05D006778 ORTHO05D008341 1.7e-16 89.7 198 35.9
PGSC0003DMG400014691 Solanum tuberosum HOM05D006778 ORTHO05D008341 3.9e-16 88.6 133 39.8
Atru.chr5.1931 Acer truncatum HOM05D006778 ORTHO05D008341 1.1e-15 87.0 99 50.5
AUR62008897 Chenopodium quinoa HOM05D006778 ORTHO05D008341 5.6e-15 84.7 143 35.7
Hma1.2p1_1858F.1_g305520 Hydrangea macrophylla HOM05D006778 ORTHO05D008341 3.6e-14 82.0 42 78.6
Actinidia30101 Actinidia chinensis HOM05D006778 ORTHO05D008341 6.2e-14 81.3 75 58.7
AagrBONN_evm.TU.Sc2ySwM_368.1574 Anthoceros agrestis HOM05D006778 ORTHO05D008341 1.1e-13 80.5 104 44.2
MCO09G744 Micromonas commoda HOM05D004020 ORTHO05D004735 5.3e-13 78.2 141 33.3
Peaxi162Scf00499g00413 Petunia axillaris HOM05D006778 ORTHO05D008341 2.6e-12 75.9 96 45.8
MD10G1170500 Malus domestica HOM05D006778 ORTHO05D008341 5.8e-12 74.7 122 40.2
Aa31LG2G21570 Aethionema arabicum HOM05D006778 ORTHO05D008341 1.3e-11 73.6 155 33.5
Hund05528 Selenicereus undatus HOM05D006778 ORTHO05D008341 1.4e-10 70.1 117 41.9
Sc17g0002480 Simmondsia chinensis HOM05D006778 ORTHO05D008341 4.2e-10 68.6 96 45.8
Sed0026958 Sechium edule HOM05D006778 ORTHO05D008341 1.6e-09 66.6 65 55.4
Lsat_1_v5_gn_9_11140 Lactuca sativa HOM05D006778 ORTHO05D008341 2.7e-09 65.9 90 46.7
PSO063G2427 Papaver somniferum HOM05D006778 ORTHO05D008341 2.7e-09 65.9 90 45.6
PSO017G3634 Papaver somniferum HOM05D006778 ORTHO05D008341 3.5e-09 65.5 90 44.4
SEGI_27672 Sequoiadendron giganteum HOM05D006778 ORTHO05D008341 1.7e-08 63.2 61 59.0
SalBow4G2567 Salvia bowleyana HOM05D006778 ORTHO05D008341 3.9e-08 62.0 54 61.1
BraA03t14903Z Brassica rapa HOM05D006778 ORTHO05D008341 5.1e-08 61.6 47 68.1
unitig_749.g13722 Utricularia gibba HOM05D006778 ORTHO05D008341 6.6e-08 61.2 90 38.9
MBI11_g20194_MAGBIO Magnolia biondii HOM05D006778 ORTHO05D008341 1.5e-07 60.1 52 55.8
Gohir.A05G416601 Gossypium hirsutum HOM05D006778 ORTHO05D008341 2.8e-06 55.8 84 44.0
Gohir.A05G417001 Gossypium hirsutum HOM05D006778 ORTHO05D008341 2.8e-06 55.8 84 44.0
Gohir.D08G007200 Gossypium hirsutum HOM05D006778 ORTHO05D008341 2.8e-06 55.8 84 44.0
Gorai.012G000200 Gossypium raimondii HOM05D006778 ORTHO05D008341 2.8e-06 55.8 84 44.0


User provided reference genes

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