Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G098200 Phaseolus vulgaris HOM05D007861 ORTHO05D007271 7.8e-52 206.8 104 100.0
Glyma.20G182100 Glycine max HOM05D007861 ORTHO05D007271 1.0e-35 153.3 105 81.9
Glyma.10G208600 Glycine max HOM05D007861 ORTHO05D007271 1.6e-33 146.0 110 78.2
Medtr1g094250 Medicago truncatula HOM05D007861 ORTHO05D007271 1.9e-26 122.5 95 68.4
Lj5g0009165 Lotus japonicus HOM05D007861 ORTHO05D007271 1.5e-23 112.8 104 65.4
Psat6g181720 Pisum sativum HOM05D007861 ORTHO05D007271 4.5e-23 111.3 105 61.9
TPR.G10289 Trifolium pratense HOM05D007861 ORTHO05D007271 2.9e-22 108.6 99 64.6
Lalb_Chr02g0152111 Lupinus albus HOM05D007861 ORTHO05D007271 2.1e-20 102.4 102 55.9
Sabra10G0174600 Salix brachista HOM05D007861 ORTHO05D007271 6.9e-16 87.4 90 53.3
Cfa001682 Carpinus fangiana HOM05D009695 ORTHO05D007271 1.7e-14 82.8 95 51.6
Potri.010G226200 Populus trichocarpa HOM05D007861 ORTHO05D007271 2.9e-14 82.0 92 51.1
Potri.008G036000 Populus trichocarpa HOM05D007861 ORTHO05D007271 9.4e-13 77.0 102 47.1
QL08p054789 Quercus lobata HOM05D009695 ORTHO05D007271 1.2e-12 76.6 97 48.5
Haze_16853 Corylus avellana HOM05D009695 ORTHO05D007271 2.1e-12 75.9 86 48.8
CiPaw.01G269700 Carya illinoinensis HOM05D007861 ORTHO05D007271 2.7e-12 75.5 93 49.5
CiPaw.02G172600 Carya illinoinensis HOM05D019773 ORTHO05D007271 4.6e-12 74.7 98 49.0
TAR633G0087 Trochodendron aralioides HOM05D007861 ORTHO05D007271 4.6e-12 74.7 92 48.9
Prupe.2G209700 Prunus persica HOM05D019773 ORTHO05D007271 7.9e-12 73.9 107 48.6
Manes.07G095300 Manihot esculenta HOM05D009695 ORTHO05D007271 1.4e-11 73.2 96 47.9
CSS0012629 Camellia sinensis var. sinensis HOM05D007861 ORTHO05D007271 2.3e-11 72.4 104 45.2
Ciclev10033954m.g Citrus clementina HOM05D007861 ORTHO05D007271 7.4e-10 67.4 92 46.7
Nn2g11569 Nelumbo nucifera HOM05D007861 ORTHO05D007271 7.4e-10 67.4 90 46.7
Aqoxy1G01166 Aquilegia oxysepala HOM05D007861 ORTHO05D007271 2.2e-09 65.9 84 46.4
Lsat_1_v5_gn_8_20640 Lactuca sativa HOM05D007861 ORTHO05D007271 2.2e-09 65.9 98 43.9
Nn2g13767 Nelumbo nucifera HOM05D007861 ORTHO05D007271 2.8e-09 65.5 99 41.4
Haze_23757 Corylus avellana HOM05D007861 ORTHO05D007271 4.8e-09 64.7 60 53.3
Cfa010349 Carpinus fangiana HOM05D007861 ORTHO05D007271 1.1e-08 63.5 60 51.7
Gorai.009G311600 Gossypium raimondii HOM05D009695 ORTHO05D007271 4.1e-08 61.6 86 43.0
AL5G35930 Arabidopsis lyrata HOM05D009695 ORTHO05D007271 5.3e-08 61.2 92 42.4
DCAR_019088 Daucus carota HOM05D009695 ORTHO05D007271 6.9e-08 60.8 106 41.5
Thhalv10011102m.g Eutrema salsugineum HOM05D009695 ORTHO05D007271 6.9e-08 60.8 63 54.0
RcHm_v2.0_Chr1g0362761 Rosa chinensis HOM05D019773 ORTHO05D007271 6.9e-08 60.8 99 42.4
Gohir.D05G294900 Gossypium hirsutum HOM05D009695 ORTHO05D007271 9.1e-08 60.5 86 43.0
Eucgr.G02861 Eucalyptus grandis HOM05D007861 ORTHO05D007271 1.2e-07 60.1 104 39.4
Manes.04G015900 Manihot esculenta HOM05D007861 ORTHO05D007271 2.0e-07 59.3 65 44.6
VMungo1127G1395 Vigna mungo HOM05D007861 ORTHO05D007271 2.6e-07 58.9 56 50.0
Cc02_g11000 Coffea canephora HOM05D009695 ORTHO05D007271 3.4e-07 58.5 93 44.1
FAN03G2059 Fragaria x ananassa HOM05D019773 ORTHO05D007271 3.4e-07 58.5 107 36.4
FAN06G4130 Fragaria x ananassa HOM05D019773 ORTHO05D007271 3.4e-07 58.5 107 38.3
FAN10G2337 Fragaria x ananassa HOM05D019773 ORTHO05D007271 3.4e-07 58.5 107 36.4
Prupe.6G107700 Prunus persica HOM05D007861 ORTHO05D007271 3.4e-07 58.5 68 44.1
CARHR164810 Cardamine hirsuta HOM05D009695 ORTHO05D007271 4.5e-07 58.2 91 39.6
Phvul.011G083700 Phaseolus vulgaris HOM05D007861 ORTHO05D007271 4.5e-07 58.2 111 36.9
Rhsim03G0116500 Rhododendron simsii HOM05D009695 ORTHO05D007271 4.5e-07 58.2 72 44.4
arahy.Tifrunner.gnm1.ann1.JM7P1B Arachis hypogaea HOM05D051911 ORTHO05D007271 1.0e-06 57.0 53 58.5
Cpa.g.sc53.122 Carica papaya HOM05D009695 ORTHO05D007271 1.0e-06 57.0 90 41.1
Gohir.A05G294400 Gossypium hirsutum HOM05D009695 ORTHO05D007271 1.0e-06 57.0 86 41.9
Migut.F01962 Erythranthe guttata HOM05D007861 ORTHO05D007271 1.3e-06 56.6 62 51.6
COL.COLO4_10198 Corchorus olitorius HOM05D009695 ORTHO05D007271 1.7e-06 56.2 67 44.8
Manes.10G049800 Manihot esculenta HOM05D009695 ORTHO05D007271 1.7e-06 56.2 100 43.0
MELO3C026916.2 Cucumis melo HOM05D007861 ORTHO05D007271 2.2e-06 55.8 92 41.3
Gohir.D05G106401 Gossypium hirsutum HOM05D007861 ORTHO05D007271 2.2e-06 55.8 30 73.3
Gorai.009G110500 Gossypium raimondii HOM05D007861 ORTHO05D007271 2.2e-06 55.8 30 73.3
C04p57110 Brassica napus HOM05D014739 ORTHO05D007271 2.9e-06 55.5 54 53.7
BraA04t17695Z Brassica rapa HOM05D014739 ORTHO05D007271 2.9e-06 55.5 54 53.7
CiPaw.13G118000 Carya illinoinensis HOM05D007861 ORTHO05D007271 2.9e-06 55.5 96 35.4
Gohir.A05G106400 Gossypium hirsutum HOM05D007861 ORTHO05D007271 2.9e-06 55.5 30 73.3
Glyma.12G079100 Glycine max HOM05D007861 ORTHO05D007271 5.0e-06 54.7 47 51.1
Solyc11g069730.1 Solanum lycopersicum HOM05D007861 ORTHO05D007271 5.0e-06 54.7 98 38.8
arahy.Tifrunner.gnm1.ann1.DME8QF Arachis hypogaea HOM05D051911 ORTHO05D007271 6.5e-06 54.3 31 74.2
BcaB01g00155 Brassica carinata HOM05D009695 ORTHO05D007271 6.5e-06 54.3 93 40.9
BcaC02g08213 Brassica carinata HOM05D014739 ORTHO05D007271 6.5e-06 54.3 41 61.0
A04p21280 Brassica napus HOM05D014739 ORTHO05D007271 6.5e-06 54.3 41 61.0
BolC4t27246H Brassica oleracea HOM05D014739 ORTHO05D007271 6.5e-06 54.3 41 61.0
Thecc.10G081700 Theobroma cacao HOM05D009695 ORTHO05D007271 6.5e-06 54.3 60 48.3
Carub.0004s0882 Capsella rubella HOM05D014739 ORTHO05D007271 8.5e-06 53.9 41 58.5
CsaV3_6G014180 Cucumis sativus L. HOM05D007861 ORTHO05D007271 8.5e-06 53.9 95 41.1
Glyma.11G195000 Glycine max HOM05D007861 ORTHO05D007271 8.5e-06 53.9 47 51.1


User provided reference genes

Program Settings