Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G040700 Phaseolus vulgaris HOM05D003735 ORTHO05D004550 1.9e-242 842.0 418 100.0
Phvul.007G040800 Phaseolus vulgaris HOM05D003735 ORTHO05D004550 6.2e-233 810.4 418 95.7
VMungo0720G1863 Vigna mungo HOM05D003735 ORTHO05D004550 8.7e-227 790.0 418 92.6
Glyma.10G261300 Glycine max HOM05D003735 ORTHO05D004550 1.9e-221 772.3 418 90.4
arahy.Tifrunner.gnm1.ann1.SBY3PD Arachis hypogaea HOM05D003735 ORTHO05D004550 3.5e-220 768.1 417 89.4
arahy.Tifrunner.gnm1.ann1.28YLK9 Arachis hypogaea HOM05D003735 ORTHO05D004550 1.0e-219 766.5 417 89.2
Glyma.20G129700 Glycine max HOM05D003735 ORTHO05D004550 3.0e-219 765.0 418 90.2
arahy.Tifrunner.gnm1.ann1.HR3ZI9 Arachis hypogaea HOM05D003735 ORTHO05D004550 1.5e-215 752.7 417 87.3
Medtr1g107235 Medicago truncatula HOM05D003735 ORTHO05D004550 2.6e-215 751.9 416 87.5
Ca_11068_v3 Cicer arietinum L. HOM05D003735 ORTHO05D004550 4.5e-215 751.1 418 86.6
TPR.G3239 Trifolium pratense HOM05D003735 ORTHO05D004550 7.6e-215 750.4 416 86.1
Lj5g0001181 Lotus japonicus HOM05D003735 ORTHO05D004550 5.0e-214 747.7 418 86.8
Psat6g217600 Pisum sativum HOM05D003735 ORTHO05D004550 6.1e-212 740.7 416 85.6
Ca_11064_v3 Cicer arietinum L. HOM05D003735 ORTHO05D004550 1.5e-210 736.1 418 84.2
Psat6g217400 Pisum sativum HOM05D003735 ORTHO05D004550 1.5e-210 736.1 414 84.3
Lalb_Chr02g0145261 Lupinus albus HOM05D003735 ORTHO05D004550 3.3e-210 734.9 418 85.2
arahy.Tifrunner.gnm1.ann1.678ZZJ Arachis hypogaea HOM05D003735 ORTHO05D004550 9.7e-210 733.4 450 80.9
TPR.G19078 Trifolium pratense HOM05D003735 ORTHO05D004550 8.2e-201 703.7 420 82.6
COL.COLO4_32583 Corchorus olitorius HOM05D003735 ORTHO05D004550 6.9e-200 700.7 415 80.5
CSS0013486 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 1.2e-199 699.9 416 79.1
Dinv15769 Davidia involucrata HOM05D003735 ORTHO05D004550 1.0e-198 696.8 416 79.3
Potri.009G094800 Populus trichocarpa HOM05D003735 ORTHO05D004550 1.3e-198 696.4 416 78.6
Gorai.008G022500 Gossypium raimondii HOM05D003735 ORTHO05D004550 1.7e-198 696.0 415 80.0
Actinidia00406 Actinidia chinensis HOM05D003735 ORTHO05D004550 3.8e-198 694.9 416 79.3
Rhsim11G0159400 Rhododendron simsii HOM05D003735 ORTHO05D004550 5.0e-198 694.5 416 78.4
Cfa004592 Carpinus fangiana HOM05D003735 ORTHO05D004550 8.5e-198 693.7 416 79.6
QL11p033367 Quercus lobata HOM05D003735 ORTHO05D004550 3.2e-197 691.8 417 78.9
Ciclev10028518m.g Citrus clementina HOM05D003735 ORTHO05D004550 4.2e-197 691.4 416 78.4
Thecc.02G109200 Theobroma cacao HOM05D003735 ORTHO05D004550 5.5e-197 691.0 414 78.3
Gohir.D12G022000 Gossypium hirsutum HOM05D003735 ORTHO05D004550 7.2e-197 690.6 415 79.5
Prupe.8G136000 Prunus persica HOM05D003735 ORTHO05D004550 9.4e-197 690.3 416 79.8
Potri.001G299700 Populus trichocarpa HOM05D003735 ORTHO05D004550 1.2e-196 689.9 416 77.9
CANSAT25G2742 Cannabis sativa HOM05D003735 ORTHO05D004550 1.6e-196 689.5 415 78.3
GSVIVG01037915001 Vitis vinifera HOM05D003735 ORTHO05D004550 1.6e-196 689.5 416 79.1
Eucgr.I01098 Eucalyptus grandis HOM05D003735 ORTHO05D004550 2.1e-196 689.1 416 78.4
Gohir.A12G021500 Gossypium hirsutum HOM05D003735 ORTHO05D004550 3.6e-196 688.3 415 79.0
Sabra09G0072900 Salix brachista HOM05D003735 ORTHO05D004550 3.6e-196 688.3 416 78.1
Rhsim11G0159300 Rhododendron simsii HOM05D003735 ORTHO05D004550 1.0e-195 686.8 416 77.4
Haze_10183 Corylus avellana HOM05D003735 ORTHO05D004550 1.4e-195 686.4 416 78.8
Dinv42198 Davidia involucrata HOM05D003735 ORTHO05D004550 1.8e-195 686.0 416 77.9
Sabra09G0073100 Salix brachista HOM05D003735 ORTHO05D004550 1.8e-195 686.0 416 77.9
ClCG05G010320 Citrullus lanatus HOM05D003735 ORTHO05D004550 2.3e-195 685.6 416 78.1
Manes.07G071000 Manihot esculenta HOM05D003735 ORTHO05D004550 5.2e-195 684.5 415 77.1
Duzib132G0856 Durio zibethinus HOM05D003735 ORTHO05D004550 6.7e-195 684.1 437 75.7
MD10G1147300 Malus domestica HOM05D003735 ORTHO05D004550 6.7e-195 684.1 417 78.9
Atru.chr5.2510 Acer truncatum HOM05D003735 ORTHO05D004550 1.1e-194 683.3 416 78.1
Manes.07G071100 Manihot esculenta HOM05D003735 ORTHO05D004550 1.1e-194 683.3 414 77.1
Haze_10190 Corylus avellana HOM05D003735 ORTHO05D004550 1.5e-194 682.9 436 75.9
CiPaw.05G012200 Carya illinoinensis HOM05D003735 ORTHO05D004550 2.6e-194 682.2 416 77.4
Duzib248G1182 Durio zibethinus HOM05D003735 ORTHO05D004550 2.6e-194 682.2 415 78.1
Gorai.008G022400 Gossypium raimondii HOM05D003735 ORTHO05D004550 3.3e-194 681.8 415 78.8
Cpa.g.sc106.101 Carica papaya HOM05D003735 ORTHO05D004550 5.7e-194 681.0 416 77.6
MD10G1098700 Malus domestica HOM05D003735 ORTHO05D004550 2.2e-193 679.1 417 78.2
Manes.07G071116 Manihot esculenta HOM05D003735 ORTHO05D004550 2.2e-193 679.1 414 77.1
CiPaw.05G012300 Carya illinoinensis HOM05D003735 ORTHO05D004550 6.3e-193 677.6 416 77.2
Lj9A323T50 Lonicera japonica HOM05D003735 ORTHO05D004550 6.3e-193 677.6 418 76.8
MELO3C019550.2 Cucumis melo HOM05D003735 ORTHO05D004550 1.1e-192 676.8 416 76.4
GSVIVG01037913001 Vitis vinifera HOM05D003735 ORTHO05D004550 2.4e-192 675.6 416 77.4
Nn5g30431 Nelumbo nucifera HOM05D003735 ORTHO05D004550 5.3e-192 674.5 416 75.7
Thecc.02G109600 Theobroma cacao HOM05D003735 ORTHO05D004550 1.2e-191 673.3 432 75.7
Prupe.7G233900 Prunus persica HOM05D003735 ORTHO05D004550 1.6e-191 672.9 414 76.6
CsaV3_3G018170 Cucumis sativus L. HOM05D003735 ORTHO05D004550 3.5e-191 671.8 416 75.7
vmacro01999 Vaccinium macrocarpon HOM05D003735 ORTHO05D004550 3.5e-191 671.8 433 74.4
Hma1.2p1_0796F.1_g219280 Hydrangea macrophylla HOM05D003735 ORTHO05D004550 7.7e-191 670.6 416 76.9
PGR142G3714 Punica granatum HOM05D003735 ORTHO05D004550 2.2e-190 669.1 414 77.5
Migut.N01162 Erythranthe guttata HOM05D003735 ORTHO05D004550 6.5e-190 667.5 415 76.1
SalBow3G2544 Salvia bowleyana HOM05D003735 ORTHO05D004550 1.5e-189 666.4 409 76.0
SGA_v2.0_scaffold393G50713 Striga asiatica HOM05D003735 ORTHO05D004550 3.2e-189 665.2 417 74.1
Lalb_Chr09g0319561 Lupinus albus HOM05D003735 ORTHO05D004550 1.6e-188 662.9 421 76.7
EL10Ac9g22264 Beta vulgaris HOM05D003735 ORTHO05D004550 2.1e-188 662.5 415 76.1
FvH4_2g05040 Fragaria vesca HOM05D003735 ORTHO05D004550 2.1e-188 662.5 416 75.7
FAN24G3115 Fragaria x ananassa HOM05D003735 ORTHO05D004550 2.1e-188 662.5 416 75.5
RcHm_v2.0_Chr6g0254911 Rosa chinensis HOM05D003735 ORTHO05D004550 2.7e-188 662.1 416 75.7
BolC6t35561H Brassica oleracea HOM05D003735 ORTHO05D004550 3.6e-188 661.8 416 75.2
Cc02_g19320 Coffea canephora HOM05D003735 ORTHO05D004550 3.6e-188 661.8 416 74.8
RcHm_v2.0_Chr2g0122061 Rosa chinensis HOM05D003735 ORTHO05D004550 3.6e-188 661.8 416 75.5
C06p04320 Brassica napus HOM05D003735 ORTHO05D004550 6.1e-188 661.0 416 75.2
BcaC08g43148 Brassica carinata HOM05D003735 ORTHO05D004550 8.0e-188 660.6 416 75.2
DCAR_021982 Daucus carota HOM05D003735 ORTHO05D004550 4.0e-187 658.3 416 75.0
THA.LOC104825376 Tarenaya hassleriana HOM05D003735 ORTHO05D004550 1.2e-186 656.8 416 74.3
MSTRG.5338 Avicennia marina HOM05D003735 ORTHO05D004550 1.5e-186 656.4 414 73.9
A06p03780 Brassica napus HOM05D003735 ORTHO05D004550 3.3e-186 655.2 416 74.5
BraA06t23583Z Brassica rapa HOM05D003735 ORTHO05D004550 3.3e-186 655.2 416 74.3
Gohir.D12G022100 Gossypium hirsutum HOM05D003735 ORTHO05D004550 3.3e-186 655.2 415 76.1
Peaxi162Scf00016g02426 Petunia axillaris HOM05D003735 ORTHO05D004550 3.3e-186 655.2 416 75.5
Hund06312 Selenicereus undatus HOM05D003735 ORTHO05D004550 4.4e-186 654.8 411 75.7
CARHR039880 Cardamine hirsuta HOM05D003735 ORTHO05D004550 5.7e-186 654.4 417 74.8
VMungo1215G1247 Vigna mungo HOM05D003735 ORTHO05D004550 5.7e-186 654.4 423 74.5
TWI75G1082 Tripterygium wilfordii HOM05D003735 ORTHO05D004550 7.5e-186 654.1 417 74.8
TWI79G0069 Tripterygium wilfordii HOM05D003735 ORTHO05D004550 1.7e-185 652.9 414 74.6
FAN27G1495 Fragaria x ananassa HOM05D003735 ORTHO05D004550 2.2e-185 652.5 432 73.1
Sp1g36700 Schrenkiella parvula HOM05D003735 ORTHO05D004550 4.8e-185 651.4 416 74.3
AUR62025585 Chenopodium quinoa HOM05D003735 ORTHO05D004550 6.3e-185 651.0 411 74.7
FAN20G1457 Fragaria x ananassa HOM05D003735 ORTHO05D004550 6.3e-185 651.0 432 72.7
Sopen01g049750 Solanum pennellii HOM05D003735 ORTHO05D004550 1.4e-184 649.8 416 75.2
Carub.0001s3903 Capsella rubella HOM05D003735 ORTHO05D004550 2.4e-184 649.0 416 75.0
FAN15G3608 Fragaria x ananassa HOM05D003735 ORTHO05D004550 2.4e-184 649.0 432 72.7
Solyc01g107550.3 Solanum lycopersicum HOM05D003735 ORTHO05D004550 2.4e-184 649.0 416 75.2
MBI16_g19654_MAGBIO Magnolia biondii HOM05D003735 ORTHO05D004550 3.1e-184 648.7 402 77.6
AT1G49820 Arabidopsis thaliana HOM05D003735 ORTHO05D004550 4.1e-184 648.3 418 74.4
PGSC0003DMG400025861 Solanum tuberosum HOM05D003735 ORTHO05D004550 1.2e-183 646.7 416 75.2
Nitab4.5_0011634g0020 Nicotiana tabacum HOM05D003735 ORTHO05D004550 1.6e-183 646.4 430 73.7
BcaB07g33662 Brassica carinata HOM05D003735 ORTHO05D004550 4.5e-183 644.8 417 72.9
Thhalv10011522m.g Eutrema salsugineum HOM05D003735 ORTHO05D004550 7.7e-183 644.0 417 73.1
HPP92_011617 Vanilla planifolia HOM05D003735 ORTHO05D004550 7.7e-183 644.0 412 75.5
Os04g0669800 Oryza sativa ssp. japonica HOM05D003735 ORTHO05D004550 1.0e-182 643.7 412 73.3
Aa31LG10G4250 Aethionema arabicum HOM05D003735 ORTHO05D004550 1.3e-182 643.3 418 73.9
AUR62001369 Chenopodium quinoa HOM05D003735 ORTHO05D004550 1.7e-182 642.9 411 74.0
AUR62039068 Chenopodium quinoa HOM05D003735 ORTHO05D004550 2.2e-182 642.5 412 74.5
CAN.G606.4 Capsicum annuum HOM05D003735 ORTHO05D004550 5.0e-182 641.3 416 74.3
Os04g0669900 Oryza sativa ssp. japonica HOM05D003735 ORTHO05D004550 1.6e-180 636.3 413 72.6
Oeu029527.5 Olea europaea HOM05D003735 ORTHO05D004550 2.7e-180 635.6 456 67.5
Zm00001eb433310 Zea mays HOM05D003735 ORTHO05D004550 6.1e-180 634.4 414 71.3
AL1G57300 Arabidopsis lyrata HOM05D003735 ORTHO05D004550 1.0e-179 633.6 416 73.3
CSS0020963 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 1.8e-179 632.9 416 73.3
CDE02G0578 Ceratophyllum demersum HOM05D003735 ORTHO05D004550 3.0e-179 632.1 417 71.9
MSTRG.27746 Avicennia marina HOM05D003735 ORTHO05D004550 9.8e-178 627.1 414 69.8
HanXRQChr10g0296961 Helianthus annuus HOM05D003735 ORTHO05D004550 2.8e-177 625.5 412 73.5
Lsat_1_v5_gn_5_115400 Lactuca sativa HOM05D003735 ORTHO05D004550 1.8e-176 622.9 412 73.1
CSS0002879 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 2.4e-176 622.5 359 80.8
MD10G1098200 Malus domestica HOM05D003735 ORTHO05D004550 3.1e-176 622.1 417 72.7
ECA234G0132 Erigeron canadensis HOM05D003735 ORTHO05D004550 1.6e-175 619.8 415 72.8
TPR.G3238 Trifolium pratense HOM05D003735 ORTHO05D004550 2.0e-175 619.4 343 85.4
Oeu013756.1 Olea europaea HOM05D003735 ORTHO05D004550 1.3e-174 616.7 500 61.6
unitig_747.g21222 Utricularia gibba HOM05D003735 ORTHO05D004550 6.5e-174 614.4 417 69.5
PSO675G8377 Papaver somniferum HOM05D003735 ORTHO05D004550 8.0e-172 607.4 416 70.9
Lj9C323T5 Lonicera japonica HOM05D003735 ORTHO05D004550 4.0e-171 605.1 368 77.4
Ah.01g018310 Amaranthus hybridus HOM05D003735 ORTHO05D004550 6.8e-171 604.4 414 71.5
PSO541G1406 Papaver somniferum HOM05D003735 ORTHO05D004550 8.8e-171 604.0 416 71.6
ATR0589G073 Amborella trichopoda HOM05D003735 ORTHO05D004550 6.3e-169 597.8 411 70.6
Sed0001414 Sechium edule HOM05D003735 ORTHO05D004550 1.8e-168 596.3 358 78.5
ECA232G2787 Erigeron canadensis HOM05D003735 ORTHO05D004550 1.2e-164 583.6 414 68.1
RcHm_v2.0_Chr6g0254921 Rosa chinensis HOM05D003735 ORTHO05D004550 5.7e-162 574.7 363 74.4
BcaC08g43149 Brassica carinata HOM05D003735 ORTHO05D004550 1.7e-161 573.2 416 68.8
Eucgr.I01100 Eucalyptus grandis HOM05D003735 ORTHO05D004550 2.4e-160 569.3 341 78.3
SMO340G0152 Selaginella moellendorffii HOM05D003735 ORTHO05D004550 2.0e-154 549.7 412 63.6
Pp3c6_19060 Physcomitrium patens HOM05D003735 ORTHO05D004550 8.3e-153 544.3 412 61.9
vmacro01998 Vaccinium macrocarpon HOM05D003735 ORTHO05D004550 4.7e-148 528.5 433 62.6
Mapoly0029s0020 Marchantia polymorpha HOM05D003735 ORTHO05D004550 4.9e-145 518.5 411 60.3
DCAR_001652 Daucus carota HOM05D003735 ORTHO05D004550 3.2e-144 515.8 414 60.4
AagrBONN_evm.TU.Sc2ySwM_344.2850 Anthoceros agrestis HOM05D003735 ORTHO05D004550 4.1e-144 515.4 410 59.8
arahy.Tifrunner.gnm1.ann1.TAI6X1 Arachis hypogaea HOM05D003735 ORTHO05D004550 2.2e-137 493.0 315 78.4
Cfa004590 Carpinus fangiana HOM05D003735 ORTHO05D004550 2.3e-134 483.0 301 77.1
AUR62010319 Chenopodium quinoa HOM05D003735 ORTHO05D004550 5.4e-128 461.8 340 66.5
CBR_g23696 Chara braunii HOM05D003735 ORTHO05D004550 7.1e-128 461.5 427 52.9
QL11p033306 Quercus lobata HOM05D003735 ORTHO05D004550 8.4e-121 438.0 302 72.2
arahy.Tifrunner.gnm1.ann1.Z6IW8Q Arachis hypogaea HOM05D003735 ORTHO05D004550 1.1e-112 411.0 235 83.8
QL11p033359 Quercus lobata HOM05D003735 ORTHO05D004550 4.8e-108 395.6 223 83.0
Cre16.g673550 Chlamydomonas reinhardtii HOM05D003735 ORTHO05D007494 2.9e-105 386.3 402 49.3
Peaxi162Scf00152g00332 Petunia axillaris HOM05D003735 ORTHO05D004550 1.2e-103 380.9 284 65.8
CBR_g12222 Chara braunii HOM05D003735 ORTHO05D004550 9.7e-101 371.3 498 40.4
PRCOL_00000373 Prasinoderma coloniale HOM05D003735 ORTHO05D006943 1.7e-97 360.5 406 46.3
MCO11G261 Micromonas commoda HOM05D003735 ORTHO05D007494 3.8e-97 359.4 411 46.0
Glyma.01G244200 Glycine max HOM05D003735 ORTHO05D004550 9.3e-96 354.8 244 70.5
Nitab4.5_0026736g0020 Nicotiana tabacum HOM05D003735 ORTHO05D004550 4.2e-88 329.3 198 77.3
Nitab4.5_0001143g0070 Nicotiana tabacum HOM05D003735 ORTHO05D004550 1.8e-86 323.9 198 75.8
Cc02_g18410 Coffea canephora HOM05D003735 ORTHO05D004550 8.2e-76 288.5 221 64.7
arahy.Tifrunner.gnm1.ann1.83SMNU Arachis hypogaea HOM05D003735 ORTHO05D004550 1.8e-75 287.3 226 68.6
Glyma.01G244132 Glycine max HOM05D003735 ORTHO05D004550 1.6e-71 274.2 157 83.4
Cc01_g17410 Coffea canephora HOM05D003735 ORTHO05D004550 1.4e-67 261.2 174 70.7
Hma1.2p1_1023F.1_g249070 Hydrangea macrophylla HOM05D003735 ORTHO05D004550 1.2e-66 258.1 258 53.9
arahy.Tifrunner.gnm1.ann1.B546P6 Arachis hypogaea HOM05D003735 ORTHO05D004550 8.0e-63 245.4 167 72.5
ATR0589G120 Amborella trichopoda HOM05D003735 ORTHO05D004550 4.8e-60 236.1 160 71.9
Ciclev10029480m.g Citrus clementina HOM05D003735 ORTHO05D004550 5.0e-57 226.1 179 63.1
QL11p033356 Quercus lobata HOM05D003735 ORTHO05D004550 4.1e-51 206.5 126 76.2
Peaxi162Scf00152g00233 Petunia axillaris HOM05D003735 ORTHO05D004550 5.4e-51 206.1 229 50.2
Gorai.013G047300 Gossypium raimondii HOM05D003735 ORTHO05D004550 2.9e-49 200.3 187 55.1
ATR0589G125 Amborella trichopoda HOM05D003735 ORTHO05D004550 1.1e-48 198.4 124 74.2
Aqoxy6G02845 Aquilegia oxysepala HOM05D003735 ORTHO05D004550 2.5e-48 197.2 126 75.4
Gohir.A13G043900 Gossypium hirsutum HOM05D003735 ORTHO05D004550 1.6e-47 194.5 335 37.9
Nitab4.5_0001143g0030 Nicotiana tabacum HOM05D003735 ORTHO05D004550 2.1e-47 194.1 121 71.9
Gohir.D13G042333 Gossypium hirsutum HOM05D003735 ORTHO05D004550 4.9e-44 183.0 341 37.2
ATR0589G028 Amborella trichopoda HOM05D003735 ORTHO05D004550 6.8e-38 162.5 122 63.1
TPR.G20408 Trifolium pratense HOM05D003735 ORTHO05D004550 9.2e-35 152.1 87 86.2
TAR376G0098 Trochodendron aralioides HOM05D003735 ORTHO05D004550 3.0e-33 147.1 95 74.7
Gorai.013G047400 Gossypium raimondii HOM05D003735 ORTHO05D004550 7.1e-27 125.9 124 54.8
MBI14_g39937_MAGBIO Magnolia biondii HOM05D003735 ORTHO05D022889 1.6e-26 124.8 75 77.3
Nn4g25342 Nelumbo nucifera HOM05D003735 ORTHO05D004550 8.9e-22 109.0 71 70.4
TPR.G31649 Trifolium pratense HOM05D000067 ORTHO05D000097 9.9e-21 105.5 87 55.2
TPR.G13570 Trifolium pratense HOM05D003735 ORTHO05D004354 4.9e-20 103.2 87 55.2
Aqoxy6G02846 Aquilegia oxysepala HOM05D003735 ORTHO05D004550 2.6e-13 80.9 57 66.7
ATR0589G078 Amborella trichopoda HOM05D003735 ORTHO05D004550 7.8e-10 69.3 59 62.7
Sabra16G0188100 Salix brachista HOM05D003735 ORTHO05D349252 9.6e-08 62.4 35 74.3
BcaC08g43052 Brassica carinata HOM05D003735 ORTHO05D004550 2.8e-07 60.8 58 46.6
Cre07.g342900 Chlamydomonas reinhardtii HOM05D003735 ORTHO05D146703 5.3e-06 56.6 301 21.3


User provided reference genes

Program Settings