Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.007G028300 Phaseolus vulgaris HOM05D004679 ORTHO05D005524 4.6e-108 394.8 234 100.0
VMungo0720G2998 Vigna mungo HOM05D004679 ORTHO05D005524 2.7e-76 289.3 222 80.2
Glyma.20G116700 Glycine max HOM05D004679 ORTHO05D005524 2.5e-61 239.6 234 68.8
Glyma.10G273200 Glycine max HOM05D004679 ORTHO05D005524 2.3e-59 233.0 231 65.4
Ca_11162_v3 Cicer arietinum L. HOM05D004679 ORTHO05D005524 7.2e-45 184.9 236 56.4
Phvul.003G030600 Phaseolus vulgaris HOM05D004679 ORTHO05D005524 4.5e-39 165.6 255 42.0
VMungo1215G2497 Vigna mungo HOM05D004679 ORTHO05D005524 5.9e-39 165.2 255 45.1
Glyma.08G261000 Glycine max HOM05D004679 ORTHO05D005524 1.3e-38 164.1 254 48.4
Psat6g226440 Pisum sativum HOM05D004679 ORTHO05D005524 3.8e-38 162.5 145 53.8
Glyma.01G080500 Glycine max HOM05D004679 ORTHO05D005524 5.0e-38 162.2 259 48.6
Psat2g095800 Pisum sativum HOM05D004679 ORTHO05D005524 7.2e-37 158.3 245 45.3
arahy.Tifrunner.gnm1.ann1.ZDDP39 Arachis hypogaea HOM05D004679 ORTHO05D005524 6.1e-36 155.2 248 40.7
TPR.G27958 Trifolium pratense HOM05D004679 ORTHO05D005524 1.0e-35 154.5 252 39.3
Lalb_Chr10g0100061 Lupinus albus HOM05D004679 ORTHO05D005524 2.3e-35 153.3 168 50.0
TPR.G18826 Trifolium pratense HOM05D004679 ORTHO05D005524 1.1e-34 151.0 242 50.4
Medtr5g056480 Medicago truncatula HOM05D004679 ORTHO05D005524 3.3e-34 149.4 254 43.7
Lj2g0027656 Lotus japonicus HOM05D004679 ORTHO05D005524 9.7e-34 147.9 167 46.1
Medtr1g110550 Medicago truncatula HOM05D004679 ORTHO05D005524 1.1e-32 144.4 219 49.3
Lalb_Chr04g0254681 Lupinus albus HOM05D004679 ORTHO05D005524 1.8e-32 143.7 252 40.9
Ca_07534_v3 Cicer arietinum L. HOM05D004679 ORTHO05D005524 5.3e-32 142.1 249 50.2
Lalb_Chr21g0308861 Lupinus albus HOM05D004679 ORTHO05D005524 8.0e-28 128.3 238 44.1
TWI79G1695 Tripterygium wilfordii HOM05D004679 ORTHO05D005524 4.0e-27 125.9 258 40.3
Lj5g0021418 Lotus japonicus HOM05D004679 ORTHO05D005524 1.3e-25 120.9 154 47.4
Potri.010G123600 Populus trichocarpa HOM05D004679 ORTHO05D005524 1.7e-25 120.6 161 41.6
Lalb_Chr06g0166021 Lupinus albus HOM05D004679 ORTHO05D005524 6.3e-25 118.6 249 44.6
CANSAT01G1145 Cannabis sativa HOM05D004679 ORTHO05D005524 3.1e-24 116.3 147 44.9
Sabra08G0092400 Salix brachista HOM05D004679 ORTHO05D005524 4.1e-24 115.9 183 40.4
Potri.008G121700 Populus trichocarpa HOM05D004679 ORTHO05D005524 7.0e-24 115.2 184 38.0
TWI31G1336 Tripterygium wilfordii HOM05D004679 ORTHO05D005524 1.6e-23 114.0 262 39.7
Actinidia16661 Actinidia chinensis HOM05D004679 ORTHO05D005524 3.5e-23 112.8 178 38.2
Cpa.g.sc1.28 Carica papaya HOM05D004679 ORTHO05D005524 3.5e-23 112.8 146 43.2
CiPaw.15G086800 Carya illinoinensis HOM05D004679 ORTHO05D005524 3.5e-23 112.8 179 37.4
Ciclev10015600m.g Citrus clementina HOM05D004679 ORTHO05D005524 5.9e-23 112.1 187 34.2
Sabra10G0093600 Salix brachista HOM05D004679 ORTHO05D005524 1.3e-22 110.9 188 39.4
FAN07G0705 Fragaria x ananassa HOM05D004679 ORTHO05D005524 2.2e-22 110.2 150 41.3
FAN12G2517 Fragaria x ananassa HOM05D004679 ORTHO05D005524 2.9e-22 109.8 172 39.0
FvH4_4g27210 Fragaria vesca HOM05D004679 ORTHO05D005524 3.8e-22 109.4 150 40.7
Atru.chr11.115 Acer truncatum HOM05D004679 ORTHO05D005524 6.5e-22 108.6 172 37.8
CiPaw.16G065600 Carya illinoinensis HOM05D004679 ORTHO05D005524 6.5e-22 108.6 183 36.6
Manes.06G066900 Manihot esculenta HOM05D004679 ORTHO05D005524 8.5e-22 108.2 180 37.8
FAN12G3270 Fragaria x ananassa HOM05D004679 ORTHO05D005524 1.1e-21 107.8 150 40.0
Manes.14G103500 Manihot esculenta HOM05D004679 ORTHO05D005524 1.5e-21 107.5 266 42.5
ClCG05G022630 Citrullus lanatus HOM05D004679 ORTHO05D005524 1.9e-21 107.1 184 35.3
FAN22G1304 Fragaria x ananassa HOM05D004679 ORTHO05D005524 3.2e-21 106.3 148 39.9
CsaV3_5G034410 Cucumis sativus L. HOM05D004679 ORTHO05D005524 5.5e-21 105.5 183 33.9
RcHm_v2.0_Chr4g0435001 Rosa chinensis HOM05D004679 ORTHO05D005524 5.5e-21 105.5 148 38.5
Duzib268G0767 Durio zibethinus HOM05D004679 ORTHO05D005524 9.4e-21 104.8 261 33.7
MELO3C012256.2 Cucumis melo HOM05D004679 ORTHO05D005524 4.7e-20 102.4 146 35.6
Dinv31629 Davidia involucrata HOM05D004679 ORTHO05D005524 6.1e-20 102.1 154 39.6
Dinv21072 Davidia involucrata HOM05D004679 ORTHO05D005524 1.4e-19 100.9 164 38.4
Duzib251G0437 Durio zibethinus HOM05D004679 ORTHO05D005524 1.8e-19 100.5 261 30.7
Cfa018585 Carpinus fangiana HOM05D004679 ORTHO05D005524 3.0e-19 99.8 190 36.3
Thecc.02G227400 Theobroma cacao HOM05D004679 ORTHO05D005524 4.0e-19 99.4 263 37.3
Haze_17496 Corylus avellana HOM05D004679 ORTHO05D005524 6.8e-19 98.6 191 37.2
Prupe.1G312600 Prunus persica HOM05D004679 ORTHO05D005524 6.8e-19 98.6 167 34.1
Sc14g0007400 Simmondsia chinensis HOM05D004679 ORTHO05D005524 8.8e-19 98.2 170 37.1
Gorai.005G192000 Gossypium raimondii HOM05D004679 ORTHO05D005524 1.5e-18 97.4 263 33.5
Gohir.D02G170800 Gossypium hirsutum HOM05D004679 ORTHO05D005524 2.0e-18 97.1 188 34.6
CSS0010437 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 1.3e-17 94.4 262 37.8
MD16G1041500 Malus domestica HOM05D004679 ORTHO05D005524 1.3e-17 94.4 147 38.1
CSS0014673 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 1.7e-17 94.0 262 37.8
Gohir.A03G147600 Gossypium hirsutum HOM05D004679 ORTHO05D005524 2.2e-17 93.6 263 33.1
COL.COLO4_05113 Corchorus olitorius HOM05D004679 ORTHO05D005524 6.3e-17 92.0 254 28.7
MD13G1040500 Malus domestica HOM05D004679 ORTHO05D005524 1.8e-16 90.5 157 35.7
QL01p041129 Quercus lobata HOM05D004679 ORTHO05D005524 1.8e-16 90.5 138 41.3
Duzib248G1266 Durio zibethinus HOM05D004679 ORTHO05D005524 9.1e-16 88.2 261 34.5
Sopen05g005230 Solanum pennellii HOM05D004679 ORTHO05D005524 1.2e-15 87.8 168 31.0
Oeu003185.3 Olea europaea HOM05D004679 ORTHO05D005524 1.6e-15 87.4 163 36.2
AL1G39920 Arabidopsis lyrata HOM05D004679 ORTHO05D005524 2.0e-15 87.0 158 36.7
Nn4g23867 Nelumbo nucifera HOM05D004679 ORTHO05D005524 2.0e-15 87.0 148 38.5
Solyc05g009420.1 Solanum lycopersicum HOM05D004679 ORTHO05D005524 2.0e-15 87.0 168 31.0
Carub.0001s2510 Capsella rubella HOM05D004679 ORTHO05D005524 3.5e-15 86.3 161 36.0
PGR102G2503 Punica granatum HOM05D004679 ORTHO05D005524 3.5e-15 86.3 176 33.0
SalBow8G2470 Salvia bowleyana HOM05D004679 ORTHO05D005524 3.5e-15 86.3 163 38.0
Nn3g17866 Nelumbo nucifera HOM05D004679 ORTHO05D005524 4.5e-15 85.9 171 35.1
Rhsim09G0106900 Rhododendron simsii HOM05D004679 ORTHO05D005524 7.7e-15 85.1 166 42.8
Oeu034235.1 Olea europaea HOM05D004679 ORTHO05D005524 1.0e-14 84.7 145 35.2
SGA_v2.0_scaffold36G14543 Striga asiatica HOM05D004679 ORTHO05D005524 1.3e-14 84.3 135 38.5
BcaC06g35214 Brassica carinata HOM05D004679 ORTHO05D005524 1.7e-14 84.0 158 34.8
C07p18590 Brassica napus HOM05D004679 ORTHO05D005524 1.7e-14 84.0 158 34.8
BolC7t42370H Brassica oleracea HOM05D004679 ORTHO05D005524 1.7e-14 84.0 158 34.8
TAR629G3220 Trochodendron aralioides HOM05D004679 ORTHO05D005524 1.7e-14 84.0 169 35.5
BcaB03g14040 Brassica carinata HOM05D004679 ORTHO05D005524 2.3e-14 83.6 160 34.4
Sp1g22820 Schrenkiella parvula HOM05D004679 ORTHO05D005524 2.3e-14 83.6 160 35.6
CSS0006602 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 3.8e-14 82.8 183 35.5
DCAR_026738 Daucus carota HOM05D004679 ORTHO05D005524 5.0e-14 82.4 133 38.3
TAR371G1108 Trochodendron aralioides HOM05D004679 ORTHO05D005524 6.5e-14 82.0 152 32.9
CSS0017035 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 8.6e-14 81.6 165 35.2
Migut.L01056 Erythranthe guttata HOM05D004679 ORTHO05D005524 8.6e-14 81.6 153 35.9
SGA_v2.0_scaffold38G14941 Striga asiatica HOM05D004679 ORTHO05D005524 8.6e-14 81.6 143 37.1
Cc11_g10010 Coffea canephora HOM05D004679 ORTHO05D005524 1.1e-13 81.3 196 34.2
MBI09_g16518_MAGBIO Magnolia biondii HOM05D004679 ORTHO05D005524 1.1e-13 81.3 133 33.8
Ah.03g137540 Amaranthus hybridus HOM05D004679 ORTHO05D005524 1.5e-13 80.9 146 35.6
AT1G25400 Arabidopsis thaliana HOM05D004679 ORTHO05D005524 1.5e-13 80.9 156 34.0
PGSC0003DMG400014542 Solanum tuberosum HOM05D004679 ORTHO05D005524 1.5e-13 80.9 167 29.3
Nitab4.5_0003715g0040 Nicotiana tabacum HOM05D004679 ORTHO05D005524 1.9e-13 80.5 161 30.4
Nitab4.5_0005548g0020 Nicotiana tabacum HOM05D004679 ORTHO05D005524 2.5e-13 80.1 156 35.3
Nitab4.5_0005669g0020 Nicotiana tabacum HOM05D004679 ORTHO05D005524 2.5e-13 80.1 170 30.0
CARHR026080 Cardamine hirsuta HOM05D004679 ORTHO05D005524 9.5e-13 78.2 157 31.2
MSTRG.7662 Avicennia marina HOM05D004679 ORTHO05D005524 1.2e-12 77.8 187 31.6
ClCG08G005010 Citrullus lanatus HOM05D004679 ORTHO05D005524 2.8e-12 76.6 258 29.5
Sp5g23510 Schrenkiella parvula HOM05D004679 ORTHO05D005524 2.8e-12 76.6 167 32.3
BraA07t29036Z Brassica rapa HOM05D004679 ORTHO05D005524 3.6e-12 76.3 146 35.6
Hma1.2p1_0061F.1_g033750 Hydrangea macrophylla HOM05D004679 ORTHO05D005524 3.6e-12 76.3 177 34.5
Nitab4.5_0000057g0200 Nicotiana tabacum HOM05D004679 ORTHO05D005524 4.7e-12 75.9 161 33.5
A07p12580 Brassica napus HOM05D004679 ORTHO05D005524 8.0e-12 75.1 144 34.7
AUR62035202 Chenopodium quinoa HOM05D004679 ORTHO05D005524 8.0e-12 75.1 144 31.9
BcaC08g46281 Brassica carinata HOM05D004679 ORTHO05D005524 1.0e-11 74.7 170 30.6
BcaC08g46285 Brassica carinata HOM05D004679 ORTHO05D005524 1.0e-11 74.7 170 30.6
C06p41510 Brassica napus HOM05D004679 ORTHO05D005524 1.0e-11 74.7 170 30.6
BolC6t39272H Brassica oleracea HOM05D004679 ORTHO05D005524 1.0e-11 74.7 170 30.6
THA.LOC104821925 Tarenaya hassleriana HOM05D004679 ORTHO05D005524 1.8e-11 73.9 151 33.1
MSTRG.848 Avicennia marina HOM05D004679 ORTHO05D005524 2.3e-11 73.6 145 35.9
Carub.0002s1495 Capsella rubella HOM05D004679 ORTHO05D005524 3.0e-11 73.2 165 32.1
Eucgr.B03012 Eucalyptus grandis HOM05D004679 ORTHO05D005524 3.0e-11 73.2 162 33.3
Sed0007978 Sechium edule HOM05D004679 ORTHO05D005524 6.8e-11 72.0 172 33.7
Lj6P756T16 Lonicera japonica HOM05D004679 ORTHO05D005524 8.8e-11 71.6 152 35.5
PGSC0003DMG400005982 Solanum tuberosum HOM05D004679 ORTHO05D005524 1.2e-10 71.2 162 33.3
Eucgr.G02311 Eucalyptus grandis HOM05D004679 ORTHO05D005524 2.0e-10 70.5 158 32.3
Sed0011079 Sechium edule HOM05D004679 ORTHO05D005524 2.6e-10 70.1 142 32.4
Aqoxy3G00274 Aquilegia oxysepala HOM05D004679 ORTHO05D005524 3.4e-10 69.7 159 34.0
AL2G27300 Arabidopsis lyrata HOM05D004679 ORTHO05D005524 4.4e-10 69.3 183 29.0
A07p34850 Brassica napus HOM05D004679 ORTHO05D005524 9.8e-10 68.2 167 28.7
BcaC03g14945 Brassica carinata HOM05D004679 ORTHO05D005524 1.3e-09 67.8 162 30.9
AT1G68440 Arabidopsis thaliana HOM05D004679 ORTHO05D005524 1.7e-09 67.4 179 30.2
BcaB03g15806 Brassica carinata HOM05D004679 ORTHO05D005524 1.7e-09 67.4 175 30.9
CsaV3_6G003280 Cucumis sativus L. HOM05D004679 ORTHO05D005524 1.7e-09 67.4 176 29.0
Solyc04g007250.1 Solanum lycopersicum HOM05D004679 ORTHO05D005524 2.2e-09 67.0 161 32.3
CARHR061220 Cardamine hirsuta HOM05D004679 ORTHO05D005524 2.8e-09 66.6 170 28.2
Sopen04g002310 Solanum pennellii HOM05D004679 ORTHO05D005524 2.8e-09 66.6 142 35.9
Ah.02g128020 Amaranthus hybridus HOM05D004679 ORTHO05D005524 3.7e-09 66.2 139 31.7
A02p14990 Brassica napus HOM05D004679 ORTHO05D005524 3.7e-09 66.2 169 32.0
BcaB05g24380 Brassica carinata HOM05D004679 ORTHO05D005524 6.3e-09 65.5 140 30.7
EL10Ac6g14380 Beta vulgaris HOM05D004679 ORTHO05D005524 8.3e-09 65.1 163 32.5
C02p24550 Brassica napus HOM05D004679 ORTHO05D005524 8.3e-09 65.1 164 30.5
MELO3C011535.2 Cucumis melo HOM05D004679 ORTHO05D005524 1.4e-08 64.3 77 37.7
BolC2t08557H Brassica oleracea HOM05D004679 ORTHO05D005524 1.8e-08 63.9 139 31.7
Thhalv10018918m.g Eutrema salsugineum HOM05D004679 ORTHO05D005524 5.4e-08 62.4 139 30.9
Thhalv10008406m.g Eutrema salsugineum HOM05D004679 ORTHO05D005524 9.2e-08 61.6 142 34.5
Sed0013939 Sechium edule HOM05D004679 ORTHO05D005524 9.2e-08 61.6 132 30.3
BraA02t06566Z Brassica rapa HOM05D004679 ORTHO05D005524 5.9e-07 58.9 169 30.2
PSO017G6556 Papaver somniferum HOM05D004679 ORTHO05D005524 2.3e-06 57.0 130 33.8


User provided reference genes

Program Settings