Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G247400 Phaseolus vulgaris HOM05D004137 ORTHO05D004804 2.3e-39 165.2 90 100.0
VMungo1383G2992 Vigna mungo HOM05D001291 ORTHO05D004804 4.9e-34 147.5 90 83.3
Glyma.08G125200 Glycine max HOM05D004137 ORTHO05D004804 8.6e-23 110.2 63 82.5
Psat7g063840 Pisum sativum HOM05D004137 ORTHO05D004804 2.4e-12 75.5 73 58.9
Lj4g0013694 Lotus japonicus HOM05D004137 ORTHO05D004804 5.3e-12 74.3 98 56.1
Haze_22939 Corylus avellana HOM05D004137 ORTHO05D004804 5.8e-11 70.9 67 55.2
CSS0017288 Camellia sinensis var. sinensis HOM05D004137 ORTHO05D004804 7.6e-11 70.5 60 60.0
CiPaw.13G177400 Carya illinoinensis HOM05D004137 ORTHO05D004804 1.3e-10 69.7 71 54.9
Medtr8g088460 Medicago truncatula HOM05D004137 ORTHO05D004804 1.7e-10 69.3 69 55.1
Hma1.2p1_0241F.1_g100550 Hydrangea macrophylla HOM05D004137 ORTHO05D004804 3.8e-10 68.2 76 52.6
QL01p003617 Quercus lobata HOM05D004137 ORTHO05D004804 4.9e-10 67.8 70 54.3
Cpa.g.c44905 Carica papaya HOM05D004137 ORTHO05D004804 1.1e-09 66.6 62 58.1
Prupe.6G003100 Prunus persica HOM05D004137 ORTHO05D004804 1.4e-09 66.2 92 50.0
CANSAT11G0501 Cannabis sativa HOM05D004137 ORTHO05D004804 1.9e-09 65.9 95 54.7
Lalb_Chr07g0185901 Lupinus albus HOM05D004137 ORTHO05D004804 1.9e-09 65.9 96 43.8
FAN25G2990 Fragaria x ananassa HOM05D004137 ORTHO05D004804 2.4e-09 65.5 94 53.2
FAN11G0915 Fragaria x ananassa HOM05D004137 ORTHO05D004804 4.2e-09 64.7 60 56.7
DCAR_023854 Daucus carota HOM05D004137 ORTHO05D004804 9.3e-09 63.5 67 49.3
Eucgr.B03601 Eucalyptus grandis HOM05D004137 ORTHO05D004804 9.3e-09 63.5 62 54.8
FvH4_3g45760 Fragaria vesca HOM05D004137 ORTHO05D004804 9.3e-09 63.5 60 55.0
ATR0737G017 Amborella trichopoda HOM05D004137 ORTHO05D004804 1.6e-08 62.8 70 54.3
FAN21G2465 Fragaria x ananassa HOM05D004137 ORTHO05D004804 2.1e-08 62.4 96 49.0
FAN16G1350 Fragaria x ananassa HOM05D004137 ORTHO05D004804 2.7e-08 62.0 97 53.6
Lsat_1_v5_gn_1_68820 Lactuca sativa HOM05D004137 ORTHO05D004804 3.5e-08 61.6 60 50.0
MD11G1003200 Malus domestica HOM05D004137 ORTHO05D004804 3.5e-08 61.6 94 46.8
ECA248G0157 Erigeron canadensis HOM05D004137 ORTHO05D004804 4.6e-08 61.2 60 50.0
PGSC0003DMG400033149 Solanum tuberosum HOM05D004137 ORTHO05D004804 4.6e-08 61.2 66 48.5
RcHm_v2.0_Chr5g0083831 Rosa chinensis HOM05D004137 ORTHO05D004804 6.0e-08 60.8 97 52.6
PGSC0003DMG400037247 Solanum tuberosum HOM05D004137 ORTHO05D004804 6.0e-08 60.8 60 46.7
TAR623G1005 Trochodendron aralioides HOM05D004137 ORTHO05D004804 6.0e-08 60.8 68 55.9
Ciclev10017215m.g Citrus clementina HOM05D004137 ORTHO05D004804 7.8e-08 60.5 61 57.4
MD03G1003400 Malus domestica HOM05D004137 ORTHO05D004804 7.8e-08 60.5 92 50.0
Nitab4.5_0000528g0100 Nicotiana tabacum HOM05D004137 ORTHO05D004804 1.0e-07 60.1 60 46.7
Nitab4.5_0005935g0010 Nicotiana tabacum HOM05D004137 ORTHO05D004804 1.0e-07 60.1 60 46.7
Solyc06g064610.1 Solanum lycopersicum HOM05D004137 ORTHO05D004804 1.0e-07 60.1 66 48.5
Sopen11g018520 Solanum pennellii HOM05D004137 ORTHO05D004804 1.3e-07 59.7 60 48.3
Manes.15G109500 Manihot esculenta HOM05D004137 ORTHO05D004804 1.7e-07 59.3 72 48.6
Sopen06g023090 Solanum pennellii HOM05D004137 ORTHO05D004804 1.7e-07 59.3 98 39.8
HanXRQChr01g0021421 Helianthus annuus HOM05D004137 ORTHO05D004804 3.0e-07 58.5 60 46.7
Potri.001G003500 Populus trichocarpa HOM05D004137 ORTHO05D004804 3.0e-07 58.5 62 51.6
Nn7g35858 Nelumbo nucifera HOM05D004137 ORTHO05D004804 3.9e-07 58.2 74 51.4
Solyc11g042440.1 Solanum lycopersicum HOM05D004137 ORTHO05D004804 3.9e-07 58.2 60 46.7
Nn2g15861 Nelumbo nucifera HOM05D004137 ORTHO05D004804 5.1e-07 57.8 60 55.0
Potri.003G221500 Populus trichocarpa HOM05D004137 ORTHO05D004804 5.1e-07 57.8 62 50.0
HanXRQChr02g0057501 Helianthus annuus HOM05D004137 ORTHO05D004804 6.6e-07 57.4 60 45.0
TWI34G1879 Tripterygium wilfordii HOM05D004137 ORTHO05D004804 6.6e-07 57.4 61 49.2
TWI60G1175 Tripterygium wilfordii HOM05D004137 ORTHO05D004804 8.7e-07 57.0 61 49.2
Migut.J01885 Erythranthe guttata HOM05D004137 ORTHO05D004804 1.1e-06 56.6 70 52.9
Manes.03G087303 Manihot esculenta HOM05D004137 ORTHO05D004804 1.5e-06 56.2 73 45.2
THA.LOC104810322 Tarenaya hassleriana HOM05D004137 ORTHO05D004804 1.9e-06 55.8 72 43.1
AL1G63420 Arabidopsis lyrata HOM05D004137 ORTHO05D004804 5.6e-06 54.3 70 41.4
arahy.Tifrunner.gnm1.ann1.K19UZV Arachis hypogaea HOM05D004137 ORTHO05D004804 5.6e-06 54.3 50 54.0
Lalb_Chr13g0295561 Lupinus albus HOM05D004137 ORTHO05D004804 5.6e-06 54.3 95 37.9


User provided reference genes

Program Settings