Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G241108 Phaseolus vulgaris HOM05D005059 ORTHO05D004248 6.6e-45 183.7 97 100.0
Glyma.08G118500 Glycine max HOM05D005059 ORTHO05D004248 3.1e-34 148.3 97 83.5
Glyma.05G161100 Glycine max HOM05D005059 ORTHO05D004248 2.6e-33 145.2 97 79.4
TPR.G6728 Trifolium pratense HOM05D005059 ORTHO05D004248 1.1e-23 113.2 101 60.4
Ca_00473_v3 Cicer arietinum L. HOM05D005059 ORTHO05D004248 1.9e-23 112.5 93 64.5
Glyma.13G226600 Glycine max HOM05D005059 ORTHO05D004248 1.2e-22 109.8 98 65.3
Psat7g068640 Pisum sativum HOM05D005059 ORTHO05D004248 2.1e-22 109.0 101 61.4
Phvul.006G173000 Phaseolus vulgaris HOM05D005059 ORTHO05D004248 2.7e-22 108.6 99 64.6
Medtr8g087390 Medicago truncatula HOM05D005059 ORTHO05D004248 6.0e-22 107.5 101 61.4
Lj4g0014521 Lotus japonicus HOM05D005059 ORTHO05D004248 2.3e-21 105.5 99 64.6
Ca_17896_v3 Cicer arietinum L. HOM05D005059 ORTHO05D004248 3.9e-21 104.8 99 60.6
arahy.Tifrunner.gnm1.ann1.YNVN02 Arachis hypogaea HOM05D005059 ORTHO05D004248 8.7e-21 103.6 100 62.0
CiPaw.09G073100 Carya illinoinensis HOM05D005059 ORTHO05D004248 8.7e-21 103.6 97 60.8
PGSC0003DMG400028485 Solanum tuberosum HOM05D005059 ORTHO05D004248 3.3e-20 101.7 93 62.4
Lj6g0009726 Lotus japonicus HOM05D005059 ORTHO05D004248 7.4e-20 100.5 100 63.0
QL05p049931 Quercus lobata HOM05D005059 ORTHO05D004248 7.4e-20 100.5 96 60.4
arahy.Tifrunner.gnm1.ann1.YXRF57 Arachis hypogaea HOM05D005059 ORTHO05D004248 1.6e-19 99.4 98 58.2
CSS0038855 Camellia sinensis var. sinensis HOM05D005059 ORTHO05D004248 1.6e-19 99.4 98 59.2
Haze_06169 Corylus avellana HOM05D005059 ORTHO05D004248 2.1e-19 99.0 98 59.2
Psat1g194640 Pisum sativum HOM05D005059 ORTHO05D004248 2.1e-19 99.0 96 55.2
Lalb_Chr15g0086331 Lupinus albus HOM05D005059 ORTHO05D004248 4.8e-19 97.8 100 60.0
Oeu060173.1 Olea europaea HOM05D005059 ORTHO05D004248 6.2e-19 97.4 98 57.1
SalBow7G3765 Salvia bowleyana HOM05D005059 ORTHO05D004248 1.1e-18 96.7 97 54.6
TAR626G0600 Trochodendron aralioides HOM05D005059 ORTHO05D004248 1.8e-18 95.9 97 58.8
CAN.G411.50 Capsicum annuum HOM05D005059 ORTHO05D004248 2.4e-18 95.5 93 61.3
Medtr2g016800 Medicago truncatula HOM05D005059 ORTHO05D004248 2.4e-18 95.5 99 55.6
Sopen02g021130 Solanum pennellii HOM05D005059 ORTHO05D004248 5.3e-18 94.4 88 60.2
Prupe.4G067000 Prunus persica HOM05D005059 ORTHO05D004248 1.2e-17 93.2 98 54.1
Rhsim13G0187800 Rhododendron simsii HOM05D005059 ORTHO05D004248 1.2e-17 93.2 98 56.1
Glyma.15G085800 Glycine max HOM05D005059 ORTHO05D004248 2.6e-17 92.0 99 59.6
TAR624G0872 Trochodendron aralioides HOM05D005059 ORTHO05D004248 2.6e-17 92.0 97 58.8
Lsat_1_v5_gn_7_25601 Lactuca sativa HOM05D005059 ORTHO05D004248 5.8e-17 90.9 89 60.7
Nn3g21078 Nelumbo nucifera HOM05D005059 ORTHO05D004248 5.8e-17 90.9 98 58.2
Cfa000656 Carpinus fangiana HOM05D005059 ORTHO05D004248 2.2e-16 89.0 100 56.0
PGR042G3020 Punica granatum HOM05D005059 ORTHO05D004248 2.2e-16 89.0 102 55.9
Migut.H01411 Erythranthe guttata HOM05D005059 ORTHO05D004248 2.9e-16 88.6 100 52.0
MD00G1009200 Malus domestica HOM05D005059 ORTHO05D004248 2.9e-16 88.6 98 55.1
MD00G1221100 Malus domestica HOM05D005059 ORTHO05D004248 2.9e-16 88.6 98 55.1
Potri.004G061300 Populus trichocarpa HOM05D005059 ORTHO05D004248 2.9e-16 88.6 107 52.3
Thecc.06G165400 Theobroma cacao HOM05D005059 ORTHO05D004248 2.9e-16 88.6 97 56.7
Oeu060178.1 Olea europaea HOM05D005059 ORTHO05D004248 3.8e-16 88.2 97 51.5
CSS0000215 Camellia sinensis var. sinensis HOM05D005059 ORTHO05D004248 4.9e-16 87.8 92 54.3
DCAR_005145 Daucus carota HOM05D005059 ORTHO05D004248 6.5e-16 87.4 101 54.5
MSTRG.13233 Avicennia marina HOM05D005059 ORTHO05D004248 8.4e-16 87.0 89 55.1
Nn6g34461 Nelumbo nucifera HOM05D005059 ORTHO05D004248 8.4e-16 87.0 97 52.6
Hma1.2p1_0113F.1_g055120 Hydrangea macrophylla HOM05D005059 ORTHO05D004248 1.1e-15 86.7 93 55.9
MD10G1275500 Malus domestica HOM05D005059 ORTHO05D004248 1.4e-15 86.3 98 53.1
TAR627G0439 Trochodendron aralioides HOM05D005059 ORTHO05D004248 2.5e-15 85.5 97 55.7
Manes.16G042800 Manihot esculenta HOM05D005059 ORTHO05D004248 3.2e-15 85.1 98 51.0
DCAR_027980 Daucus carota HOM05D005059 ORTHO05D004248 4.2e-15 84.7 102 52.0
Dinv32337 Davidia involucrata HOM05D005059 ORTHO05D004248 5.5e-15 84.3 86 58.1
Sabra04G0040600 Salix brachista HOM05D005059 ORTHO05D004248 5.5e-15 84.3 105 51.4
Lalb_Chr18g0054771 Lupinus albus HOM05D005059 ORTHO05D004248 7.1e-15 84.0 77 66.2
RcHm_v2.0_Chr5g0011661 Rosa chinensis HOM05D005059 ORTHO05D004248 9.3e-15 83.6 101 52.5
COL.COLO4_31233 Corchorus olitorius HOM05D005059 ORTHO05D004248 1.6e-14 82.8 101 53.5
FvH4_3g07300 Fragaria vesca HOM05D005059 ORTHO05D004248 2.1e-14 82.4 100 50.0
FAN16G0464 Fragaria x ananassa HOM05D005059 ORTHO05D004248 2.1e-14 82.4 100 53.0
Oeu043118.1 Olea europaea HOM05D005059 ORTHO05D004248 2.1e-14 82.4 98 57.1
TWI53G1149 Tripterygium wilfordii HOM05D005059 ORTHO05D004248 2.7e-14 82.0 100 55.0
Oeu040922.1 Olea europaea HOM05D005059 ORTHO05D004248 3.5e-14 81.6 98 53.1
TAR624G0770 Trochodendron aralioides HOM05D005059 ORTHO05D004248 3.5e-14 81.6 93 55.9
Cc02_g15600 Coffea canephora HOM05D005059 ORTHO05D004248 4.6e-14 81.3 100 48.0
FAN21G0043 Fragaria x ananassa HOM05D005059 ORTHO05D004248 4.6e-14 81.3 100 52.0
MBI06_g16696_MAGBIO Magnolia biondii HOM05D005059 ORTHO05D004248 4.6e-14 81.3 91 53.8
CiPaw.10G061800 Carya illinoinensis HOM05D005059 ORTHO05D004248 6.0e-14 80.9 98 55.1
FAN25G1124 Fragaria x ananassa HOM05D005059 ORTHO05D004248 6.0e-14 80.9 100 49.0
FAN11G2282 Fragaria x ananassa HOM05D005059 ORTHO05D004248 7.9e-14 80.5 100 49.0
Gohir.A05G153400 Gossypium hirsutum HOM05D005059 ORTHO05D004248 7.9e-14 80.5 99 54.5
SalBow8G0022 Salvia bowleyana HOM05D005059 ORTHO05D004248 1.0e-13 80.1 55 70.9
Manes.17G059300 Manihot esculenta HOM05D005059 ORTHO05D004248 1.3e-13 79.7 103 50.5
TPR.G4530 Trifolium pratense HOM05D005059 ORTHO05D004248 2.3e-13 79.0 67 62.7
Rhsim13G0187700 Rhododendron simsii HOM05D005059 ORTHO05D004248 3.0e-13 78.6 97 50.5
Gohir.D05G156000 Gossypium hirsutum HOM05D005059 ORTHO05D004248 3.9e-13 78.2 99 53.5
Gorai.009G160500 Gossypium raimondii HOM05D005059 ORTHO05D004248 3.9e-13 78.2 99 53.5
Aqoxy4G00224 Aquilegia oxysepala HOM05D005059 ORTHO05D004248 8.7e-13 77.0 99 51.5
Dinv18371 Davidia involucrata HOM05D000126 ORTHO05D000085 1.1e-12 76.6 92 48.9
Potri.011G070500 Populus trichocarpa HOM05D005059 ORTHO05D004248 1.1e-12 76.6 105 50.5
Gorai.010G161500 Gossypium raimondii HOM05D005059 ORTHO05D004248 1.5e-12 76.3 100 51.0
Dinv12752 Davidia involucrata HOM05D005059 ORTHO05D004248 1.9e-12 75.9 60 70.0
MBI07_g00460_MAGBIO Magnolia biondii HOM05D005059 ORTHO05D004248 3.3e-12 75.1 60 68.3
Atru.chr10.1568 Acer truncatum HOM05D005059 ORTHO05D004248 5.7e-12 74.3 85 54.1
Gohir.D06G138900 Gossypium hirsutum HOM05D005059 ORTHO05D004248 5.7e-12 74.3 100 51.0
MSTRG.7430 Avicennia marina HOM05D005059 ORTHO05D004248 7.4e-12 73.9 99 48.5
Eucgr.D00466 Eucalyptus grandis HOM05D005059 ORTHO05D004248 7.4e-12 73.9 100 51.0
Ciclev10018148m.g Citrus clementina HOM05D005059 ORTHO05D004248 1.3e-11 73.2 94 53.2
Sabra11G0055200 Salix brachista HOM05D005059 ORTHO05D004248 1.6e-11 72.8 102 47.1
DCAR_027979 Daucus carota HOM05D005059 ORTHO05D004248 4.8e-11 71.2 108 43.5
SGA_v2.0_scaffold1G00085 Striga asiatica HOM05D005059 ORTHO05D004248 4.8e-11 71.2 96 43.8
Migut.M01008 Erythranthe guttata HOM05D005059 ORTHO05D004248 6.3e-11 70.9 99 47.5
Gohir.A06G133800 Gossypium hirsutum HOM05D005059 ORTHO05D004248 8.2e-11 70.5 100 50.0
CSS0027903 Camellia sinensis var. sinensis HOM05D008890 ORTHO05D004248 1.1e-10 70.1 98 54.1
BcaB03g13892 Brassica carinata HOM05D005059 ORTHO05D004248 2.4e-10 68.9 99 45.5
TAR629G2882 Trochodendron aralioides HOM05D005059 ORTHO05D004248 2.4e-10 68.9 85 50.6
AT1G29290 Arabidopsis thaliana HOM05D005059 ORTHO05D004248 5.3e-10 67.8 103 46.6
Sed0013946 Sechium edule HOM05D005059 ORTHO05D004248 6.9e-10 67.4 97 52.6
Manes.03G100250 Manihot esculenta HOM05D008890 ORTHO05D004248 9.0e-10 67.0 100 44.0
AL1G43080 Arabidopsis lyrata HOM05D005059 ORTHO05D004248 1.5e-09 66.2 104 45.2
AUR62039479 Chenopodium quinoa HOM05D005059 ORTHO05D004248 2.0e-09 65.9 60 60.0
ClCG01G023900 Citrullus lanatus HOM05D005059 ORTHO05D004248 2.0e-09 65.9 92 47.8
BcaB07g32517 Brassica carinata HOM05D005059 ORTHO05D004248 2.6e-09 65.5 99 42.4
A09p37060 Brassica napus HOM05D005059 ORTHO05D004248 3.4e-09 65.1 99 42.4
BraA09t39221Z Brassica rapa HOM05D005059 ORTHO05D004248 3.4e-09 65.1 99 42.4
CARHR028610 Cardamine hirsuta HOM05D005059 ORTHO05D004248 3.4e-09 65.1 99 41.4
BcaB03g13023 Brassica carinata HOM05D009829 ORTHO05D012418 4.5e-09 64.7 100 45.0
Rhsim04G0027000 Rhododendron simsii HOM05D002453 ORTHO05D008746 4.5e-09 64.7 75 54.7
AL1G29130 Arabidopsis lyrata HOM05D009829 ORTHO05D012418 5.9e-09 64.3 103 42.7
Thhalv10009585m.g Eutrema salsugineum HOM05D005059 ORTHO05D004248 5.9e-09 64.3 105 44.8
TAR627G0061 Trochodendron aralioides HOM05D005059 ORTHO05D004248 7.6e-09 63.9 85 49.4
BcaB03g12151 Brassica carinata HOM05D005059 ORTHO05D004248 1.0e-08 63.5 51 64.7
Thhalv10009335m.g Eutrema salsugineum HOM05D009829 ORTHO05D012418 1.0e-08 63.5 104 43.3
Dinv15004 Davidia involucrata HOM05D005059 ORTHO05D004248 1.3e-08 63.2 76 56.6
AT1G16950 Arabidopsis thaliana HOM05D009829 ORTHO05D012418 1.7e-08 62.8 103 42.7
BcaC05g26955 Brassica carinata HOM05D005059 ORTHO05D004248 1.7e-08 62.8 99 42.4
C05p28050 Brassica napus HOM05D005059 ORTHO05D004248 1.7e-08 62.8 99 42.4
BolC5t31533H Brassica oleracea HOM05D005059 ORTHO05D004248 1.7e-08 62.8 99 42.4
Carub.0001s1668 Capsella rubella HOM05D009829 ORTHO05D012418 1.7e-08 62.8 95 44.2
A07p10740 Brassica napus HOM05D005059 ORTHO05D004248 2.2e-08 62.4 97 41.2
BraA07t28869Z Brassica rapa HOM05D005059 ORTHO05D004248 2.2e-08 62.4 97 41.2
CSS0004272 Camellia sinensis var. sinensis HOM05D005059 ORTHO05D004248 2.2e-08 62.4 91 47.3
Actinidia18806 Actinidia chinensis HOM05D005059 ORTHO05D004248 2.9e-08 62.0 74 48.6
Oeu061362.1 Olea europaea HOM05D005059 ORTHO05D004248 2.9e-08 62.0 97 44.3
CARHR017460 Cardamine hirsuta HOM05D009829 ORTHO05D012418 5.0e-08 61.2 102 43.1
Lalb_Chr13g0295291 Lupinus albus HOM05D005059 ORTHO05D004248 5.0e-08 61.2 71 56.3
THA.LOC104820608 Tarenaya hassleriana HOM05D005059 ORTHO05D004248 5.0e-08 61.2 55 61.8
Ah.14g086980 Amaranthus hybridus HOM05D005059 ORTHO05D004248 6.5e-08 60.8 61 57.4
Hma1.2p1_1016F.1_g248040 Hydrangea macrophylla HOM05D005059 ORTHO05D004248 6.5e-08 60.8 97 44.3
A08p31200 Brassica napus HOM05D009829 ORTHO05D012418 8.5e-08 60.5 100 43.0
Sp1g15090 Schrenkiella parvula HOM05D009829 ORTHO05D012418 8.5e-08 60.5 105 43.8
BcaC06g35423 Brassica carinata HOM05D005059 ORTHO05D004248 1.1e-07 60.1 98 40.8
C07p16340 Brassica napus HOM05D005059 ORTHO05D004248 1.1e-07 60.1 98 40.8
BolC7t42128H Brassica oleracea HOM05D005059 ORTHO05D004248 1.1e-07 60.1 98 40.8
BcaC07g38826 Brassica carinata HOM05D009829 ORTHO05D012418 1.4e-07 59.7 100 43.0
Carub.0001s2751 Capsella rubella HOM05D005059 ORTHO05D004248 1.4e-07 59.7 100 40.0
Nitab4.5_0000788g0070 Nicotiana tabacum HOM05D005059 ORTHO05D004248 1.4e-07 59.7 98 43.9
C08p17660 Brassica napus HOM05D009829 ORTHO05D012418 1.9e-07 59.3 100 43.0
BolC8t49391H Brassica oleracea HOM05D009829 ORTHO05D012418 1.9e-07 59.3 100 43.0
CDE02G4707 Ceratophyllum demersum HOM05D001096 ORTHO05D001629 1.9e-07 59.3 88 42.0
Sp1g25220 Schrenkiella parvula HOM05D005059 ORTHO05D004248 1.9e-07 59.3 96 44.8
Hma1.2p1_0373F.1_g138420 Hydrangea macrophylla HOM05D005059 ORTHO05D004248 3.2e-07 58.5 71 52.1
MELO3C035718.2 Cucumis melo HOM05D005059 ORTHO05D004248 4.2e-07 58.2 108 40.7
PSO339G2616 Papaver somniferum HOM05D005059 ORTHO05D004248 4.2e-07 58.2 101 44.6
BcaB02g06660 Brassica carinata HOM05D009829 ORTHO05D012418 5.5e-07 57.8 104 41.3
BcaB02g06661 Brassica carinata HOM05D009829 ORTHO05D012418 5.5e-07 57.8 104 41.3
C05p15270 Brassica napus HOM05D009829 ORTHO05D012418 7.2e-07 57.4 98 40.8
BraA08t35043Z Brassica rapa HOM05D009829 ORTHO05D012418 7.2e-07 57.4 100 42.0
A06p12860 Brassica napus HOM05D009829 ORTHO05D012418 9.3e-07 57.0 98 40.8
BraA06t24446Z Brassica rapa HOM05D009829 ORTHO05D012418 9.3e-07 57.0 98 40.8
Thecc.07G128300 Theobroma cacao HOM05D008890 ORTHO05D004248 9.3e-07 57.0 96 37.5
Aa31LG7G1380 Aethionema arabicum HOM05D009829 ORTHO05D012418 2.1e-06 55.8 63 47.6
Thecc.07G128100 Theobroma cacao HOM05D008890 ORTHO05D004248 2.1e-06 55.8 97 43.3
Nitab4.5_0006663g0010 Nicotiana tabacum HOM05D005059 ORTHO05D004248 2.7e-06 55.5 99 40.4
BcaC07g41449 Brassica carinata HOM05D009829 ORTHO05D012418 4.6e-06 54.7 95 38.9
Aa31LG6G6240 Aethionema arabicum HOM05D005059 ORTHO05D004248 6.1e-06 54.3 101 39.6
A08p25180 Brassica napus HOM05D005059 ORTHO05D004248 6.1e-06 54.3 105 38.1
BraA08t34472Z Brassica rapa HOM05D005059 ORTHO05D004248 6.1e-06 54.3 105 38.1
Lsat_1_v5_gn_7_102321 Lactuca sativa HOM05D005059 ORTHO05D004248 6.1e-06 54.3 98 43.9
EL10Ac4g08366 Beta vulgaris HOM05D005059 ORTHO05D004248 7.9e-06 53.9 56 57.1
BcaC01g00093 Brassica carinata HOM05D005059 ORTHO05D004248 7.9e-06 53.9 105 41.9
BcaC05g25551 Brassica carinata HOM05D009829 ORTHO05D012418 7.9e-06 53.9 98 40.8
C03p75700 Brassica napus HOM05D005059 ORTHO05D004248 7.9e-06 53.9 105 41.9
C08p44170 Brassica napus HOM05D009829 ORTHO05D000015 7.9e-06 53.9 80 43.8
BolC3t19830H Brassica oleracea HOM05D005059 ORTHO05D004248 7.9e-06 53.9 105 41.9
BolC8t51964H Brassica oleracea HOM05D009829 ORTHO05D000015 7.9e-06 53.9 80 43.8


User provided reference genes

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