Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G109200 Phaseolus vulgaris HOM05D001533 ORTHO05D005122 1.1e-177 626.7 345 100.0
VMungo1215G1138 Vigna mungo HOM05D001533 ORTHO05D005122 2.0e-168 595.9 345 94.8
Glyma.01G166700 Glycine max HOM05D001533 ORTHO05D005122 1.1e-158 563.5 345 89.0
Lj2g0008453 Lotus japonicus HOM05D001533 ORTHO05D005122 1.1e-142 510.4 345 81.4
Glyma.11G076600 Glycine max HOM05D001533 ORTHO05D005122 2.4e-142 509.2 331 85.8
Lj4g0002557 Lotus japonicus HOM05D001533 ORTHO05D005122 4.3e-139 498.4 345 79.4
Glyma.02G049100 Glycine max HOM05D001533 ORTHO05D005122 1.6e-138 496.5 345 80.3
Prupe.7G167200 Prunus persica HOM05D001533 ORTHO05D005122 3.7e-138 495.4 345 78.0
MD02G1133400 Malus domestica HOM05D001533 ORTHO05D005122 1.1e-137 493.8 345 78.3
Cfa006964 Carpinus fangiana HOM05D001533 ORTHO05D005122 5.3e-137 491.5 335 78.8
QL06p033501 Quercus lobata HOM05D001533 ORTHO05D005122 6.9e-137 491.1 344 78.2
VMungo0251G1454 Vigna mungo HOM05D001533 ORTHO05D005122 2.6e-136 489.2 345 78.3
Ciclev10025997m.g Citrus clementina HOM05D001533 ORTHO05D005122 1.7e-135 486.5 345 75.9
Haze_03774 Corylus avellana HOM05D001533 ORTHO05D005122 3.8e-135 485.3 335 77.9
TWI09G0584 Tripterygium wilfordii HOM05D001533 ORTHO05D005122 1.1e-134 483.8 345 75.9
RcHm_v2.0_Chr2g0099581 Rosa chinensis HOM05D001533 ORTHO05D005122 1.9e-134 483.0 345 77.7
Thecc.01G020200 Theobroma cacao HOM05D001533 ORTHO05D005122 3.2e-134 482.3 345 75.9
Cpa.g.sc6.238 Carica papaya HOM05D001533 ORTHO05D005122 4.2e-134 481.9 345 75.4
Phvul.003G262700 Phaseolus vulgaris HOM05D001533 ORTHO05D005122 7.1e-134 481.1 345 77.1
CiPaw.07G057700 Carya illinoinensis HOM05D001533 ORTHO05D005122 1.0e-132 477.2 337 76.0
TWI53G2031 Tripterygium wilfordii HOM05D001533 ORTHO05D005122 1.0e-132 477.2 342 76.3
COL.COLO4_21923 Corchorus olitorius HOM05D001533 ORTHO05D005122 1.3e-132 476.9 346 75.7
Manes.01G145100 Manihot esculenta HOM05D001533 ORTHO05D005122 3.0e-132 475.7 345 75.4
TPR.G30063 Trifolium pratense HOM05D001533 ORTHO05D005122 5.1e-132 474.9 345 75.7
vmacro18418 Vaccinium macrocarpon HOM05D001533 ORTHO05D005122 5.1e-132 474.9 345 73.6
Rhsim08G0034200 Rhododendron simsii HOM05D001533 ORTHO05D005122 6.7e-132 474.6 345 73.9
MELO3C016393.2 Cucumis melo HOM05D001533 ORTHO05D005122 1.1e-131 473.8 345 75.9
FvH4_1g11960 Fragaria vesca HOM05D001533 ORTHO05D005122 1.9e-131 473.0 345 76.2
FAN26G0519 Fragaria x ananassa HOM05D001533 ORTHO05D005122 1.9e-131 473.0 345 76.2
FAN23G2041 Fragaria x ananassa HOM05D001533 ORTHO05D005122 9.6e-131 470.7 345 75.9
FAN19G0503 Fragaria x ananassa HOM05D001533 ORTHO05D005122 1.6e-130 469.9 345 75.7
FAN28G1062 Fragaria x ananassa HOM05D001533 ORTHO05D005122 2.1e-130 469.5 345 75.7
CiPaw.08G132200 Carya illinoinensis HOM05D001533 ORTHO05D005122 6.3e-130 468.0 345 73.0
Glyma.16G129200 Glycine max HOM05D001533 ORTHO05D005122 8.2e-130 467.6 345 76.8
CsaV3_4G005560 Cucumis sativus L. HOM05D001533 ORTHO05D005122 1.1e-129 467.2 345 75.1
Peaxi162Scf00083g00714 Petunia axillaris HOM05D001533 ORTHO05D005122 1.1e-129 467.2 345 72.5
Potri.005G115500 Populus trichocarpa HOM05D001533 ORTHO05D005122 1.1e-129 467.2 341 75.7
Cc00_g26600 Coffea canephora HOM05D001533 ORTHO05D005122 2.4e-129 466.1 345 73.0
Nitab4.5_0006286g0040 Nicotiana tabacum HOM05D001533 ORTHO05D005122 4.1e-129 465.3 345 72.5
Ca_22369_v3 Cicer arietinum L. HOM05D001533 ORTHO05D005122 6.9e-129 464.5 345 75.9
Actinidia31002 Actinidia chinensis HOM05D001533 ORTHO05D005122 9.0e-129 464.2 345 72.5
TAR381G0830 Trochodendron aralioides HOM05D001533 ORTHO05D005122 1.0e-127 460.7 345 72.2
ClCG07G008590 Citrullus lanatus HOM05D001533 ORTHO05D005122 1.3e-127 460.3 335 75.5
CAN.G1671.6 Capsicum annuum HOM05D001533 ORTHO05D005122 2.5e-126 456.1 345 71.6
Sabra05G0094600 Salix brachista HOM05D001533 ORTHO05D005122 4.2e-126 455.3 370 70.3
Dinv33621 Davidia involucrata HOM05D001533 ORTHO05D005122 5.5e-126 454.9 345 72.5
Sed0027203 Sechium edule HOM05D001533 ORTHO05D005122 9.3e-126 454.1 342 74.0
Solyc02g083990.3 Solanum lycopersicum HOM05D001533 ORTHO05D005122 4.6e-125 451.8 345 70.4
Duzib187G1725 Durio zibethinus HOM05D001533 ORTHO05D005122 6.1e-125 451.4 347 71.2
Potri.007G012600 Populus trichocarpa HOM05D001533 ORTHO05D005122 3.9e-124 448.7 341 73.0
CAN.G893.6 Capsicum annuum HOM05D001533 ORTHO05D005122 6.7e-124 448.0 345 69.9
Sopen02g028790 Solanum pennellii HOM05D001533 ORTHO05D005122 1.9e-123 446.4 345 69.6
CSS0008566 Camellia sinensis var. sinensis HOM05D001533 ORTHO05D005122 1.6e-122 443.4 317 77.0
Nn6g32353 Nelumbo nucifera HOM05D001533 ORTHO05D005122 1.6e-122 443.4 341 72.1
arahy.Tifrunner.gnm1.ann1.H1V2NS Arachis hypogaea HOM05D001533 ORTHO05D005122 3.7e-122 442.2 328 76.5
Solyc03g033580.3 Solanum lycopersicum HOM05D001533 ORTHO05D005122 2.0e-120 436.4 345 68.4
Sopen03g006360 Solanum pennellii HOM05D001533 ORTHO05D005122 2.9e-119 432.6 345 67.8
Lalb_Chr09g0321781 Lupinus albus HOM05D001533 ORTHO05D005122 7.2e-118 427.9 345 71.6
Nitab4.5_0000438g0040 Nicotiana tabacum HOM05D001533 ORTHO05D005122 7.2e-118 427.9 313 72.2
Peaxi162Scf00034g00264 Petunia axillaris HOM05D001533 ORTHO05D005122 4.6e-117 425.2 345 66.1
SGA_v2.0_scaffold137G35090 Striga asiatica HOM05D001533 ORTHO05D005122 6.1e-117 424.9 345 67.0
Gorai.003G010300 Gossypium raimondii HOM05D001533 ORTHO05D005122 3.9e-116 422.2 345 67.8
PSO170G0469 Papaver somniferum HOM05D001533 ORTHO05D005122 8.8e-116 421.0 335 69.6
CSS0030027 Camellia sinensis var. sinensis HOM05D001533 ORTHO05D005122 1.5e-115 420.2 345 67.8
Gohir.A02G170000 Gossypium hirsutum HOM05D001533 ORTHO05D005122 4.4e-115 418.7 345 67.2
PSO700G0386 Papaver somniferum HOM05D001533 ORTHO05D005122 1.4e-113 413.7 335 68.4
arahy.Tifrunner.gnm1.ann1.JA3WP2 Arachis hypogaea HOM05D001533 ORTHO05D005122 1.2e-112 410.6 289 77.9
MSTRG.2705 Avicennia marina HOM05D001533 ORTHO05D005122 7.7e-112 407.9 317 71.0
SalBow3G3323 Salvia bowleyana HOM05D001533 ORTHO05D005122 7.7e-112 407.9 394 60.7
Duzib264G0112 Durio zibethinus HOM05D001533 ORTHO05D005122 2.2e-111 406.4 345 66.1
CANSAT80G2154 Cannabis sativa HOM05D001533 ORTHO05D005122 5.5e-110 401.7 345 67.0
Manes.02G103600 Manihot esculenta HOM05D001533 ORTHO05D005122 2.7e-109 399.4 345 65.5
Gohir.A11G176200 Gossypium hirsutum HOM05D001533 ORTHO05D005122 3.6e-109 399.1 345 65.8
Hma1.2p1_0743F.1_g211570 Hydrangea macrophylla HOM05D001533 ORTHO05D005122 6.1e-109 398.3 345 64.1
Gohir.D03G010000 Gossypium hirsutum HOM05D001533 ORTHO05D005122 7.9e-109 397.9 345 64.9
Atru.chr3.790 Acer truncatum HOM05D001533 ORTHO05D005122 1.1e-107 394.0 345 65.5
Lj2C466T13 Lonicera japonica HOM05D001533 ORTHO05D005122 1.5e-107 393.7 346 64.7
Hma1.2p1_2281F.1_g318810 Hydrangea macrophylla HOM05D001533 ORTHO05D005122 2.6e-107 392.9 289 71.3
Lalb_Chr16g0377521 Lupinus albus HOM05D001533 ORTHO05D005122 9.7e-107 391.0 345 66.4
Gorai.007G195800 Gossypium raimondii HOM05D001533 ORTHO05D005122 5.3e-105 385.2 345 64.3
Lalb_Chr05g0229891 Lupinus albus HOM05D001533 ORTHO05D005122 9.1e-105 384.4 345 64.6
Nitab4.5_0006119g0010 Nicotiana tabacum HOM05D001533 ORTHO05D005122 2.0e-104 383.3 341 61.6
Gohir.D11G183900 Gossypium hirsutum HOM05D001533 ORTHO05D005122 7.7e-104 381.3 345 64.1
DCAR_016613 Daucus carota HOM05D001533 ORTHO05D005122 1.7e-103 380.2 337 63.8
Eucgr.J02426 Eucalyptus grandis HOM05D001533 ORTHO05D005122 2.7e-101 372.9 346 63.0
Nn5g29330 Nelumbo nucifera HOM05D001533 ORTHO05D005122 1.4e-100 370.5 340 62.1
Duzib147G0876 Durio zibethinus HOM05D001533 ORTHO05D005122 2.3e-100 369.8 345 61.7
Oeu035307.1 Olea europaea HOM05D001533 ORTHO05D005122 1.2e-99 367.5 345 60.6
CANSAT01G1879 Cannabis sativa HOM05D001533 ORTHO05D005122 1.5e-99 367.1 345 62.6
THA.LOC104804260 Tarenaya hassleriana HOM05D001533 ORTHO05D005122 1.5e-99 367.1 347 61.1
TAR628G0959 Trochodendron aralioides HOM05D001533 ORTHO05D005122 4.4e-99 365.5 345 60.3
AUR62043756 Chenopodium quinoa HOM05D001533 ORTHO05D005122 1.3e-98 364.0 345 61.4
AUR62044201 Chenopodium quinoa HOM05D001533 ORTHO05D005122 1.3e-98 364.0 345 61.4
THA.LOC104807492 Tarenaya hassleriana HOM05D001533 ORTHO05D005122 1.2e-96 357.5 345 60.0
AUR62007522 Chenopodium quinoa HOM05D001533 ORTHO05D005122 2.0e-96 356.7 338 60.7
Aa31LG1G14750 Aethionema arabicum HOM05D001533 ORTHO05D005122 3.8e-95 352.4 343 59.2
GSVIVG01018794001 Vitis vinifera HOM05D001533 ORTHO05D005122 3.2e-94 349.4 345 60.0
Lj4C217T16 Lonicera japonica HOM05D001533 ORTHO05D005122 4.2e-94 349.0 336 62.2
Oeu005320.1 Olea europaea HOM05D001533 ORTHO05D005122 5.5e-94 348.6 317 64.0
Nitab4.5_0001959g0020 Nicotiana tabacum HOM05D001533 ORTHO05D005122 9.4e-94 347.8 287 65.5
Os06g0715400 Oryza sativa ssp. japonica HOM05D001533 ORTHO05D005122 1.6e-93 347.1 333 58.3
Sp3g31420 Schrenkiella parvula HOM05D001533 ORTHO05D005122 2.1e-93 346.7 348 59.8
Hund16484 Selenicereus undatus HOM05D001533 ORTHO05D005122 4.7e-93 345.5 345 57.4
PGSC0003DMG400003635 Solanum tuberosum HOM05D001533 ORTHO05D005122 4.7e-93 345.5 259 70.3
EL10As8g23833 Beta vulgaris HOM05D001533 ORTHO05D005122 1.5e-91 340.5 366 56.0
Zm00001eb228040 Zea mays HOM05D001533 ORTHO05D005122 2.2e-90 336.7 324 59.0
Psat6g005760 Pisum sativum HOM05D001533 ORTHO05D005122 6.3e-90 335.1 295 65.4
AL3G51060 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 2.4e-89 333.2 350 58.0
AT2G17990 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 5.4e-89 332.0 350 57.7
Psat4g098560 Pisum sativum HOM05D001533 ORTHO05D005122 1.2e-88 330.9 346 58.7
ECA246G3074 Erigeron canadensis HOM05D001533 ORTHO05D005122 1.6e-88 330.5 334 56.9
Thhalv10004494m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 7.2e-86 321.6 341 56.0
Carub.0003s3213 Capsella rubella HOM05D001533 ORTHO05D005122 1.2e-85 320.9 348 56.6
PGR119G1411 Punica granatum HOM05D001533 ORTHO05D005122 2.8e-85 319.7 334 57.8
Thhalv10022777m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 6.8e-84 315.1 338 58.6
CARHR108480 Cardamine hirsuta HOM05D001533 ORTHO05D005122 2.0e-83 313.5 325 58.5
Aqoxy6G02302 Aquilegia oxysepala HOM05D001533 ORTHO05D005122 3.4e-83 312.8 340 57.6
A07p02680 Brassica napus HOM05D001533 ORTHO05D005122 4.1e-81 305.8 346 57.2
BraA07t28064Z Brassica rapa HOM05D001533 ORTHO05D005122 4.1e-81 305.8 346 57.2
MBI05_g43883_MAGBIO Magnolia biondii HOM05D001533 ORTHO05D005122 7.8e-80 301.6 338 55.0
C07p04980 Brassica napus HOM05D001533 ORTHO05D005122 1.3e-79 300.8 346 56.4
BcaB08g34783 Brassica carinata HOM05D001533 ORTHO05D005122 3.8e-79 299.3 319 58.0
BcaC06g36351 Brassica carinata HOM05D001533 ORTHO05D005122 1.1e-78 297.7 346 55.8
Aa31LG8G15170 Aethionema arabicum HOM05D001533 ORTHO05D005122 3.3e-78 296.2 348 54.0
Sp2g30440 Schrenkiella parvula HOM05D001533 ORTHO05D005122 3.3e-78 296.2 288 60.8
Sc16g0002080 Simmondsia chinensis HOM05D001533 ORTHO05D005122 3.3e-78 296.2 345 52.8
Oeu048459.1 Olea europaea HOM05D001533 ORTHO05D005122 2.3e-76 290.0 315 56.2
AT5G66250 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 4.0e-76 289.3 345 52.8
CDE04G1263 Ceratophyllum demersum HOM05D001533 ORTHO05D005122 1.2e-75 287.7 329 49.8
AL8G45270 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 2.0e-75 287.0 343 52.5
AL6G43540 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 4.4e-75 285.8 343 53.9
CDE02G4489 Ceratophyllum demersum HOM05D001533 ORTHO05D005122 1.1e-73 281.2 321 51.4
A06p33470 Brassica napus HOM05D001533 ORTHO05D005122 3.5e-72 276.2 333 54.1
BraA06t26280Z Brassica rapa HOM05D001533 ORTHO05D005122 8.6e-71 271.6 328 53.4
Medtr8g076020 Medicago truncatula HOM05D001533 ORTHO05D005122 8.6e-71 271.6 345 50.7
BolC3t18147H Brassica oleracea HOM05D001533 ORTHO05D005122 4.3e-70 269.2 323 54.5
Carub.0008s2824 Capsella rubella HOM05D001533 ORTHO05D005122 5.6e-70 268.9 343 50.1
C09p11970 Brassica napus HOM05D001533 ORTHO05D005122 4.7e-69 265.8 285 57.2
Aa31LG6G13050 Aethionema arabicum HOM05D001533 ORTHO05D005122 8.9e-68 261.5 345 48.4
A09p10100 Brassica napus HOM05D001533 ORTHO05D005122 5.8e-67 258.8 284 56.0
BolC9t54085H Brassica oleracea HOM05D001533 ORTHO05D005122 9.8e-67 258.1 303 53.8
Thhalv10025665m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 1.7e-66 257.3 341 48.4
BraA09t36653Z Brassica rapa HOM05D001533 ORTHO05D005122 6.4e-66 255.4 296 53.7
C03p58890 Brassica napus HOM05D001533 ORTHO05D005122 1.1e-65 254.6 323 52.3
BcaNung04495 Brassica carinata HOM05D001533 ORTHO05D005122 1.9e-65 253.8 228 62.7
Ah.02g124450 Amaranthus hybridus HOM05D001533 ORTHO05D005122 3.5e-64 249.6 268 54.1
Sp7g33880 Schrenkiella parvula HOM05D001533 ORTHO05D005122 2.3e-63 246.9 312 50.3
ATR0680G362 Amborella trichopoda HOM05D001533 ORTHO05D005122 5.4e-57 225.7 339 41.6
Carub.0007s0413 Capsella rubella HOM05D001533 ORTHO05D005122 9.2e-57 224.9 338 45.9
AagrBONN_evm.TU.Sc2ySwM_228.4945 Anthoceros agrestis HOM05D001533 ORTHO05D005122 2.7e-56 223.4 347 39.8
Lsat_1_v5_gn_4_146800 Lactuca sativa HOM05D001533 ORTHO05D005122 6.6e-55 218.8 320 45.0
BolC7t40899H Brassica oleracea HOM05D001533 ORTHO05D005122 3.3e-54 216.5 291 49.8
MD15G1246600 Malus domestica HOM05D001533 ORTHO05D005122 4.3e-54 216.1 138 89.1
SMO358G0186 Selaginella moellendorffii HOM05D001533 ORTHO05D005122 1.1e-52 211.5 290 45.9
Lsat_1_v5_gn_4_146821 Lactuca sativa HOM05D001533 ORTHO05D005122 2.4e-52 210.3 338 42.9
SEGI_32707 Sequoiadendron giganteum HOM05D001533 ORTHO05D005122 3.2e-49 199.9 336 37.8
CARHR281470 Cardamine hirsuta HOM05D001533 ORTHO05D005122 1.7e-47 194.1 226 51.8
BcaNung04499 Brassica carinata HOM05D001533 ORTHO05D005122 5.6e-46 189.1 266 46.6
HanXRQChr16g0531321 Helianthus annuus HOM05D001533 ORTHO05D005122 2.4e-44 183.7 177 56.5
unitig_899.g14709 Utricularia gibba HOM05D001533 ORTHO05D000063 5.4e-41 172.6 140 67.9
AT4G36105 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 9.3e-41 171.8 304 43.4
AUR62043805 Chenopodium quinoa HOM05D001533 ORTHO05D005122 2.3e-39 167.2 172 61.0
HPP92_007128 Vanilla planifolia HOM05D001533 ORTHO05D005122 1.3e-37 161.4 194 49.5
C01p02930 Brassica napus HOM05D001533 ORTHO05D024397 3.2e-33 146.7 314 39.2
CARHR244500 Cardamine hirsuta HOM05D001533 ORTHO05D005122 5.1e-31 139.4 317 38.5
BolC1t00279H Brassica oleracea HOM05D001533 ORTHO05D024397 6.9e-28 129.0 292 38.7
unitig_699.g19710 Utricularia gibba HOM05D001533 ORTHO05D005122 1.8e-23 114.4 172 46.5
A01p02640 Brassica napus HOM05D001533 ORTHO05D024397 1.5e-22 111.3 311 34.7
BraA01t00250Z Brassica rapa HOM05D001533 ORTHO05D024397 1.5e-22 111.3 311 34.7
A09p11640 Brassica napus HOM05D001533 ORTHO05D019802 5.5e-17 92.8 111 58.6
arahy.Tifrunner.gnm1.ann1.2HD0B7 Arachis hypogaea HOM05D001533 ORTHO05D019802 1.5e-14 84.7 54 83.3
CARHR281460 Cardamine hirsuta HOM05D001533 ORTHO05D019802 2.5e-14 84.0 55 80.0
BcaNung00764 Brassica carinata HOM05D001533 ORTHO05D024397 3.3e-14 83.6 292 32.2
BraA09t36810Z Brassica rapa HOM05D001533 ORTHO05D019802 4.3e-14 83.2 111 55.0
BolC9t54258H Brassica oleracea HOM05D001533 ORTHO05D019802 7.9e-08 62.4 116 46.6
BcaC04g22938 Brassica carinata HOM05D001533 ORTHO05D019802 1.9e-06 57.8 109 42.2


User provided reference genes

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