Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.001G169600 Phaseolus vulgaris HOM05D006937 ORTHO05D008747 1.2e-77 293.1 152 100.0
Glyma.01G053200 Glycine max HOM05D006937 ORTHO05D008747 1.3e-71 273.1 152 91.4
VMungo1215G2773 Vigna mungo HOM05D006937 ORTHO05D008747 1.3e-71 273.1 151 91.4
Glyma.02G111700 Glycine max HOM05D006937 ORTHO05D008747 4.9e-71 271.2 152 90.8
Lj1g0016193 Lotus japonicus HOM05D006937 ORTHO05D008747 1.5e-67 259.6 152 86.8
Lj6g0000786 Lotus japonicus HOM05D006937 ORTHO05D008747 3.7e-66 255.0 152 84.9
Medtr5g042620 Medicago truncatula HOM05D006937 ORTHO05D008747 6.9e-65 250.8 152 82.2
Prupe.1G280000 Prunus persica HOM05D006937 ORTHO05D008747 1.5e-64 249.6 152 82.2
Gohir.D05G305600 Gossypium hirsutum HOM05D006937 ORTHO05D008747 3.4e-64 248.4 152 80.3
Gorai.009G325600 Gossypium raimondii HOM05D006937 ORTHO05D008747 3.4e-64 248.4 152 80.3
Manes.01G032100 Manihot esculenta HOM05D006937 ORTHO05D008747 4.5e-64 248.1 152 80.9
Thecc.02G339100 Theobroma cacao HOM05D006937 ORTHO05D008747 7.6e-64 247.3 152 80.9
Lalb_Chr10g0098481 Lupinus albus HOM05D006937 ORTHO05D008747 1.0e-63 246.9 152 84.2
Gohir.A05G305601 Gossypium hirsutum HOM05D006937 ORTHO05D008747 1.3e-63 246.5 152 80.3
MD13G1068100 Malus domestica HOM05D006937 ORTHO05D008747 6.5e-63 244.2 153 80.4
MD16G1066900 Malus domestica HOM05D006937 ORTHO05D008747 1.1e-62 243.4 153 79.7
Ciclev10032989m.g Citrus clementina HOM05D006937 ORTHO05D008747 1.9e-62 242.7 152 80.9
COL.COLO4_27967 Corchorus olitorius HOM05D006937 ORTHO05D008747 2.5e-62 242.3 152 78.3
CsaV3_7G033500 Cucumis sativus L. HOM05D006937 ORTHO05D008747 3.2e-62 241.9 151 76.8
Eucgr.G02475 Eucalyptus grandis HOM05D006937 ORTHO05D008747 3.2e-62 241.9 152 80.3
TWI60G0457 Tripterygium wilfordii HOM05D006937 ORTHO05D008747 3.2e-62 241.9 149 81.2
MELO3C024261.2 Cucumis melo HOM05D006937 ORTHO05D008747 4.2e-62 241.5 151 77.5
Potri.008G091400 Populus trichocarpa HOM05D006937 ORTHO05D008747 4.2e-62 241.5 152 78.9
QL03p069840 Quercus lobata HOM05D006937 ORTHO05D008747 4.2e-62 241.5 151 78.1
arahy.Tifrunner.gnm1.ann1.TRF8LB Arachis hypogaea HOM05D006937 ORTHO05D008747 2.1e-61 239.2 152 80.9
Atru.chr11.1713 Acer truncatum HOM05D006937 ORTHO05D008747 2.7e-61 238.8 152 79.6
TPR.G19944 Trifolium pratense HOM05D006937 ORTHO05D008747 2.7e-61 238.8 152 78.3
Sed0004013 Sechium edule HOM05D006937 ORTHO05D008747 4.6e-61 238.0 152 75.7
Sopen05g007730 Solanum pennellii HOM05D006937 ORTHO05D008747 4.6e-61 238.0 145 78.6
arahy.Tifrunner.gnm1.ann1.A48TS2 Arachis hypogaea HOM05D006937 ORTHO05D008747 7.9e-61 237.3 159 79.2
CiPaw.06G089000 Carya illinoinensis HOM05D006937 ORTHO05D008747 1.3e-60 236.5 152 77.0
PGSC0003DMG401028340 Solanum tuberosum HOM05D006937 ORTHO05D008747 1.3e-60 236.5 145 79.3
CSS0011527 Camellia sinensis var. sinensis HOM05D006937 ORTHO05D008747 1.8e-60 236.1 145 80.7
CANSAT64G0520 Cannabis sativa HOM05D006937 ORTHO05D008747 1.8e-60 236.1 152 75.7
MSTRG.2329 Avicennia marina HOM05D006937 ORTHO05D008747 2.3e-60 235.7 141 82.3
CAN.G1642.3 Capsicum annuum HOM05D006937 ORTHO05D008747 3.0e-60 235.3 143 81.1
Sed0007221 Sechium edule HOM05D006937 ORTHO05D008747 3.9e-60 235.0 152 75.0
FvH4_4g30700 Fragaria vesca HOM05D006937 ORTHO05D008747 6.7e-60 234.2 152 76.3
Migut.E00068 Erythranthe guttata HOM05D006937 ORTHO05D008747 1.1e-59 233.4 143 78.3
Dinv34099 Davidia involucrata HOM05D003669 ORTHO05D005046 1.9e-59 232.6 143 79.7
FAN17G2174 Fragaria x ananassa HOM05D006937 ORTHO05D008747 1.9e-59 232.6 152 75.7
CAN.G964.22 Capsicum annuum HOM05D006937 ORTHO05D008747 2.5e-59 232.3 143 81.1
RcHm_v2.0_Chr4g0439101 Rosa chinensis HOM05D006937 ORTHO05D008747 2.5e-59 232.3 152 75.7
arahy.Tifrunner.gnm1.ann1.8BL9U8 Arachis hypogaea HOM05D006937 ORTHO05D008747 5.7e-59 231.1 151 79.5
FAN07G0310 Fragaria x ananassa HOM05D006937 ORTHO05D008747 9.7e-59 230.3 152 75.0
SGA_v2.0_scaffold287G47146 Striga asiatica HOM05D006937 ORTHO05D008747 2.2e-58 229.2 141 80.1
TAR629G2875 Trochodendron aralioides HOM05D006937 ORTHO05D008747 2.8e-58 228.8 145 75.9
DCAR_018308 Daucus carota HOM05D006937 ORTHO05D008747 4.8e-58 228.0 143 77.6
GSVIVG01025409001 Vitis vinifera HOM05D006937 ORTHO05D008747 1.1e-57 226.9 144 76.4
Eucgr.D01709 Eucalyptus grandis HOM05D006937 ORTHO05D008747 2.4e-57 225.7 152 77.0
Cc11_g12540 Coffea canephora HOM05D006937 ORTHO05D008747 6.9e-57 224.2 142 78.9
SGA_v2.0_scaffold114G32026 Striga asiatica HOM05D006937 ORTHO05D008747 2.0e-56 222.6 151 75.5
Haze_11954 Corylus avellana HOM05D006937 ORTHO05D008747 2.6e-56 222.2 161 73.3
Zm00001eb326530 Zea mays HOM05D006937 ORTHO05D008747 2.6e-56 222.2 145 75.2
Nn3g17337 Nelumbo nucifera HOM05D006937 ORTHO05D008747 1.3e-55 219.9 145 75.2
ATR0730G163 Amborella trichopoda HOM05D006937 ORTHO05D008747 2.2e-55 219.2 141 75.9
EL10Ac6g13467 Beta vulgaris HOM05D006937 ORTHO05D008747 3.8e-55 218.4 143 74.1
unitig_744.g24284 Utricularia gibba HOM05D006937 ORTHO05D008747 5.0e-55 218.0 153 73.2
Lsat_1_v5_gn_3_20221 Lactuca sativa HOM05D006937 ORTHO05D008747 2.5e-54 215.7 142 74.6
Os07g0595800 Oryza sativa ssp. japonica HOM05D006937 ORTHO05D008747 2.5e-54 215.7 139 74.8
Psat2g127680 Pisum sativum HOM05D006937 ORTHO05D008747 7.2e-54 214.2 130 83.1
HanXRQChr17g0537301 Helianthus annuus HOM05D006937 ORTHO05D008747 1.6e-53 213.0 139 74.1
Lj3A1033G46 Lonicera japonica HOM05D006937 ORTHO05D008747 2.1e-53 212.6 131 80.2
Duzib268G1027 Durio zibethinus HOM05D006937 ORTHO05D008747 7.9e-53 210.7 152 71.1
Aqoxy3G03499 Aquilegia oxysepala HOM05D006937 ORTHO05D008747 1.8e-52 209.5 140 73.6
Aqoxy5G02063 Aquilegia oxysepala HOM05D006937 ORTHO05D008747 1.8e-52 209.5 140 73.6
ECA246G2190 Erigeron canadensis HOM05D006937 ORTHO05D008747 6.7e-52 207.6 141 70.9
Oeu016239.1 Olea europaea HOM05D006937 ORTHO05D008747 1.1e-51 206.8 129 78.3
PSO675G6138 Papaver somniferum HOM05D006937 ORTHO05D008747 5.7e-51 204.5 142 69.7
Hund25447 Selenicereus undatus HOM05D006937 ORTHO05D008747 5.7e-51 204.5 143 72.0
Nitab4.5_0000391g0170 Nicotiana tabacum HOM05D006937 ORTHO05D008747 1.7e-50 203.0 143 72.7
PGR119G1353 Punica granatum HOM05D006937 ORTHO05D008747 2.8e-50 202.2 157 65.0
AUR62024142 Chenopodium quinoa HOM05D006937 ORTHO05D008747 1.4e-49 199.9 143 71.3
PGR142G2813 Punica granatum HOM05D006937 ORTHO05D008747 1.8e-49 199.5 152 65.8
SEGI_41088 Sequoiadendron giganteum HOM05D006937 ORTHO05D008747 1.8e-49 199.5 137 70.1
Nitab4.5_0008978g0010 Nicotiana tabacum HOM05D006937 ORTHO05D008747 9.1e-49 197.2 190 59.5
AUR62005588 Chenopodium quinoa HOM05D006937 ORTHO05D008747 4.5e-48 194.9 139 71.2
Actinidia31958 Actinidia chinensis HOM05D003669 ORTHO05D005046 8.5e-47 190.7 148 68.2
Ca_04880_v3 Cicer arietinum L. HOM05D006937 ORTHO05D008747 1.4e-44 183.3 109 82.6
Rhsim12G0077900 Rhododendron simsii HOM05D006937 ORTHO05D008747 3.9e-44 181.8 111 78.4
PSO541G5056 Papaver somniferum HOM05D006937 ORTHO05D008747 5.2e-44 181.4 142 64.1
FAN12G3635 Fragaria x ananassa HOM05D006937 ORTHO05D008747 8.8e-44 180.6 132 71.2
Aqoxy5G02982 Aquilegia oxysepala HOM05D006937 ORTHO05D008747 1.3e-42 176.8 140 65.0
THA.LOC104808654 Tarenaya hassleriana HOM05D006937 ORTHO05D008747 1.1e-41 173.7 152 55.9
Sc11g0000570 Simmondsia chinensis HOM05D006937 ORTHO05D008747 1.8e-41 172.9 111 73.0
AL1G39070 Arabidopsis lyrata HOM05D006937 ORTHO05D008747 2.6e-40 169.1 149 55.7
arahy.Tifrunner.gnm1.ann1.J4SELD Arachis hypogaea HOM05D006937 ORTHO05D008747 4.5e-40 168.3 111 80.2
AagrBONN_evm.TU.Sc2ySwM_228.447 Anthoceros agrestis HOM05D006937 ORTHO05D008747 7.7e-40 167.5 137 59.1
Aa31LG7G8430 Aethionema arabicum HOM05D006937 ORTHO05D008747 1.3e-39 166.8 152 55.3
CDE11G0882 Ceratophyllum demersum HOM05D006937 ORTHO05D008747 1.7e-39 166.4 156 55.1
A07p13030 Brassica napus HOM05D001252 ORTHO05D005295 2.2e-39 166.0 149 56.4
BcaC06g35132 Brassica carinata HOM05D006937 ORTHO05D008747 3.8e-39 165.2 143 58.0
Carub.0001s2437 Capsella rubella HOM05D006937 ORTHO05D008747 3.8e-39 165.2 143 57.3
AT1G26660 Arabidopsis thaliana HOM05D006937 ORTHO05D008747 5.0e-39 164.9 153 55.6
BraA07t29074Z Brassica rapa HOM05D001252 ORTHO05D005295 5.0e-39 164.9 149 55.7
Mapoly0006s0094 Marchantia polymorpha HOM05D006937 ORTHO05D008747 5.0e-39 164.9 138 58.0
BcaB03g14081 Brassica carinata HOM05D006937 ORTHO05D008747 6.5e-39 164.5 145 56.6
Thhalv10008997m.g Eutrema salsugineum HOM05D006937 ORTHO05D008747 6.5e-39 164.5 149 54.4
Sp6g00050 Schrenkiella parvula HOM05D006937 ORTHO05D008747 1.1e-38 163.7 143 55.9
BcaB05g21932 Brassica carinata HOM05D006937 ORTHO05D008747 1.5e-38 163.3 145 55.9
C07p19480 Brassica napus HOM05D001252 ORTHO05D005295 5.5e-38 161.4 149 55.0
BolC7t42467H Brassica oleracea HOM05D001252 ORTHO05D001661 5.5e-38 161.4 149 55.0
Pp3c21_19110 Physcomitrium patens HOM05D006937 ORTHO05D008747 9.4e-38 160.6 133 57.1
HPP92_013408 Vanilla planifolia HOM05D006937 ORTHO05D008747 2.1e-37 159.5 127 63.8
CBR_g48697 Chara braunii HOM05D006937 ORTHO05D008747 3.6e-37 158.7 140 51.4
SHI35111 Sapria himalayana HOM05D006937 ORTHO05D008747 1.2e-35 153.7 141 57.4
Peaxi162Scf00222g00024 Petunia axillaris HOM05D006937 ORTHO05D008747 4.4e-35 151.8 116 64.7
Sabra08G0068400 Salix brachista HOM05D006937 ORTHO05D008747 2.2e-31 139.4 116 61.2
SalBow8G3842 Salvia bowleyana HOM05D006937 ORTHO05D008747 3.2e-30 135.6 141 50.4
CSS0016362 Camellia sinensis var. sinensis HOM05D006937 ORTHO05D008747 4.7e-29 131.7 149 55.0
Ah.02g130690 Amaranthus hybridus HOM05D006937 ORTHO05D008747 6.1e-29 131.3 143 51.7
ClCG09G001850 Citrullus lanatus HOM05D006937 ORTHO05D008747 2.0e-27 126.3 86 74.4
arahy.Tifrunner.gnm1.ann1.K4YSPN Arachis hypogaea HOM05D006937 ORTHO05D008747 7.7e-24 114.4 65 84.6
PSO357G0488 Papaver somniferum HOM05D006937 ORTHO05D008747 1.0e-23 114.0 81 65.4
Potri.010G163600 Populus trichocarpa HOM05D006937 ORTHO05D008747 5.4e-17 91.7 155 41.3
A09p40080 Brassica napus HOM05D004525 ORTHO05D005295 1.3e-15 87.0 75 53.3
BcaC05g26400 Brassica carinata HOM05D004525 ORTHO05D005295 4.3e-14 82.0 61 63.9
Cpa.g.sc1.69 Carica papaya HOM05D006937 ORTHO05D008747 1.4e-12 77.0 45 86.7
Sabra10G0124400 Salix brachista HOM05D006937 ORTHO05D008747 2.3e-12 76.3 112 43.8
PRCOL_00006274 Prasinoderma coloniale HOM05D006937 ORTHO05D008747 8.6e-07 57.8 145 30.3
Cc00_g19610 Coffea canephora HOM05D000421 ORTHO05D013979 1.9e-06 56.6 34 76.5
Cc08_g04320 Coffea canephora HOM05D006937 ORTHO05D013979 1.9e-06 56.6 34 76.5


User provided reference genes

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