Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO801G0206 Papaver somniferum HOM05D005598 ORTHO05D006587 2.3e-139 498.8 243 100.0
PSO339G6152 Papaver somniferum HOM05D005598 ORTHO05D006587 6.3e-137 490.7 242 97.9
CSS0000091 Camellia sinensis var. sinensis HOM05D005598 ORTHO05D006587 3.0e-118 428.7 241 85.1
QL04p046731 Quercus lobata HOM05D005598 ORTHO05D006587 4.3e-117 424.9 241 83.4
TAR636G1340 Trochodendron aralioides HOM05D005598 ORTHO05D006587 1.8e-115 419.5 241 83.4
Rhsim09G0141700 Rhododendron simsii HOM05D005598 ORTHO05D006587 5.2e-115 417.9 241 83.8
Dinv10930 Davidia involucrata HOM05D005598 ORTHO05D006587 1.2e-114 416.8 241 83.0
CDE08G1414 Ceratophyllum demersum HOM05D005598 ORTHO05D006587 3.4e-114 415.2 234 83.3
PGR142G4231 Punica granatum HOM05D005598 ORTHO05D006587 5.8e-114 414.5 241 82.6
Lj2C33T4 Lonicera japonica HOM05D005598 ORTHO05D006587 1.7e-113 412.9 235 82.6
Sabra08G0013100 Salix brachista HOM05D005598 ORTHO05D006587 1.7e-113 412.9 231 84.8
Haze_03295 Corylus avellana HOM05D005598 ORTHO05D006587 4.9e-113 411.4 240 82.1
Nn6g34854 Nelumbo nucifera HOM05D005598 ORTHO05D006587 4.9e-113 411.4 241 81.3
Sed0022725 Sechium edule HOM05D005598 ORTHO05D006587 4.9e-113 411.4 233 82.8
Manes.10G062100 Manihot esculenta HOM05D005598 ORTHO05D006587 6.4e-113 411.0 241 80.9
Actinidia34728 Actinidia chinensis HOM05D005598 ORTHO05D006587 1.1e-112 410.2 241 81.7
Gohir.D05G288900 Gossypium hirsutum HOM05D005598 ORTHO05D006587 1.1e-112 410.2 241 81.3
Cc02_g09610 Coffea canephora HOM05D005598 ORTHO05D006587 1.4e-112 409.8 231 84.0
Potri.008G019800 Populus trichocarpa HOM05D005598 ORTHO05D006587 1.4e-112 409.8 231 84.4
MELO3C017716.2 Cucumis melo HOM05D005598 ORTHO05D006587 2.4e-112 409.1 232 83.2
Migut.F01603 Erythranthe guttata HOM05D005598 ORTHO05D006587 3.2e-112 408.7 241 80.5
Aqoxy4G02744 Aquilegia oxysepala HOM05D005598 ORTHO05D006587 4.1e-112 408.3 241 80.5
CsaV3_4G003460 Cucumis sativus L. HOM05D005598 ORTHO05D006587 4.1e-112 408.3 242 80.6
MSTRG.23901 Avicennia marina HOM05D005598 ORTHO05D006587 7.1e-112 407.5 241 80.5
Prupe.2G069600 Prunus persica HOM05D005598 ORTHO05D006587 7.1e-112 407.5 233 81.5
Gohir.A05G287700 Gossypium hirsutum HOM05D005598 ORTHO05D006587 1.2e-111 406.8 241 80.5
Eucgr.G02689 Eucalyptus grandis HOM05D005598 ORTHO05D006587 1.6e-111 406.4 242 80.2
Thecc.10G109100 Theobroma cacao HOM05D005598 ORTHO05D006587 1.6e-111 406.4 241 80.9
CANSAT56G2222 Cannabis sativa HOM05D005598 ORTHO05D006587 2.1e-111 406.0 241 80.9
CiPaw.13G040600 Carya illinoinensis HOM05D005598 ORTHO05D006587 2.1e-111 406.0 241 79.7
Duzib128G1802 Durio zibethinus HOM05D005598 ORTHO05D006587 2.1e-111 406.0 241 80.9
RcHm_v2.0_Chr5g0049931 Rosa chinensis HOM05D005598 ORTHO05D006587 2.7e-111 405.6 241 79.3
MD02G1261600 Malus domestica HOM05D005598 ORTHO05D006587 3.5e-111 405.2 241 80.1
Gorai.009G304000 Gossypium raimondii HOM05D005598 ORTHO05D006587 6.0e-111 404.4 241 80.5
Nitab4.5_0003590g0030 Nicotiana tabacum HOM05D005598 ORTHO05D006587 6.0e-111 404.4 231 84.0
TWI38G0756 Tripterygium wilfordii HOM05D005598 ORTHO05D006587 6.0e-111 404.4 241 80.9
GSVIVG01010722001 Vitis vinifera HOM05D005598 ORTHO05D006587 6.0e-111 404.4 241 81.3
SalBow6G5745 Salvia bowleyana HOM05D005598 ORTHO05D006587 7.8e-111 404.1 241 80.5
Peaxi162Scf00173g00110 Petunia axillaris HOM05D005598 ORTHO05D006587 2.3e-110 402.5 232 82.3
Sopen11g002760 Solanum pennellii HOM05D005598 ORTHO05D006587 3.0e-110 402.1 231 83.1
Atru.chr12.1043 Acer truncatum HOM05D005598 ORTHO05D006587 3.9e-110 401.7 241 79.3
CAN.G645.19 Capsicum annuum HOM05D005598 ORTHO05D006587 5.1e-110 401.4 231 82.7
COL.COLO4_38547 Corchorus olitorius HOM05D005598 ORTHO05D006587 6.6e-110 401.0 241 79.3
Solyc11g006860.2 Solanum lycopersicum HOM05D005598 ORTHO05D006587 6.6e-110 401.0 231 83.1
Lsat_1_v5_gn_2_104400 Lactuca sativa HOM05D005598 ORTHO05D006587 1.1e-109 400.2 231 80.5
Ca_25662_v3 Cicer arietinum L. HOM05D005598 ORTHO05D006587 1.5e-109 399.8 241 78.8
PGSC0003DMG400023970 Solanum tuberosum HOM05D005598 ORTHO05D006587 1.5e-109 399.8 231 82.7
ECA238G1649 Erigeron canadensis HOM05D005598 ORTHO05D006587 2.5e-109 399.1 241 79.7
Carub.0004s0468 Capsella rubella HOM05D005598 ORTHO05D006587 3.3e-109 398.7 231 79.7
Phvul.007G022800 Phaseolus vulgaris HOM05D005598 ORTHO05D006587 3.3e-109 398.7 234 80.3
Ciclev10016103m.g Citrus clementina HOM05D005598 ORTHO05D006587 4.3e-109 398.3 241 76.8
Hund06785 Selenicereus undatus HOM05D005598 ORTHO05D006587 5.6e-109 397.9 231 81.4
THA.LOC104824207 Tarenaya hassleriana HOM05D005598 ORTHO05D006587 5.6e-109 397.9 242 77.3
HPP92_000055 Vanilla planifolia HOM05D005598 ORTHO05D006587 5.6e-109 397.9 234 80.3
Aa31LG7G12150 Aethionema arabicum HOM05D005598 ORTHO05D006587 7.3e-109 397.5 231 79.2
Medtr1g111980 Medicago truncatula HOM05D005598 ORTHO05D006587 9.5e-109 397.1 241 78.8
ATR0820G296 Amborella trichopoda HOM05D005598 ORTHO05D006587 1.2e-108 396.7 230 81.3
AUR62042081 Chenopodium quinoa HOM05D005598 ORTHO05D006587 1.6e-108 396.4 231 80.5
FAN11G2626 Fragaria x ananassa HOM05D005598 ORTHO05D006587 1.6e-108 396.4 231 80.1
SGA_v2.0_scaffold62G21319 Striga asiatica HOM05D005598 ORTHO05D006587 1.6e-108 396.4 241 78.4
DCAR_006354 Daucus carota HOM05D005598 ORTHO05D006587 2.1e-108 396.0 231 80.1
EL10Ac4g08688 Beta vulgaris HOM05D005598 ORTHO05D006587 2.8e-108 395.6 231 80.1
Lj5g0018811 Lotus japonicus HOM05D005598 ORTHO05D006587 4.7e-108 394.8 241 78.4
Lalb_Chr02g0146251 Lupinus albus HOM05D005598 ORTHO05D006587 4.7e-108 394.8 241 79.7
arahy.Tifrunner.gnm1.ann1.8DLZ0X Arachis hypogaea HOM05D005598 ORTHO05D006587 6.2e-108 394.4 241 77.2
Sp4g04110 Schrenkiella parvula HOM05D005598 ORTHO05D006587 6.2e-108 394.4 231 79.2
ClCG07G015650 Citrullus lanatus HOM05D005598 ORTHO05D006587 1.1e-107 393.7 263 73.0
arahy.Tifrunner.gnm1.ann1.L8YGTT Arachis hypogaea HOM05D005598 ORTHO05D006587 1.4e-107 393.3 241 76.8
vmacro10312 Vaccinium macrocarpon HOM05D005598 ORTHO05D006587 1.4e-107 393.3 241 79.7
VMungo0720G0111 Vigna mungo HOM05D005598 ORTHO05D006587 1.4e-107 393.3 234 79.1
BcaB06g28035 Brassica carinata HOM05D005598 ORTHO05D006587 2.4e-107 392.5 231 78.8
AT2G25100 Arabidopsis thaliana HOM05D005598 ORTHO05D006587 3.1e-107 392.1 231 77.9
CARHR116600 Cardamine hirsuta HOM05D005598 ORTHO05D006587 3.1e-107 392.1 231 78.4
HanXRQChr11g0342091 Helianthus annuus HOM05D005598 ORTHO05D006587 4.0e-107 391.7 241 78.4
BraA04t17544Z Brassica rapa HOM05D005598 ORTHO05D006587 5.2e-107 391.3 231 78.4
FvH4_3g27560 Fragaria vesca HOM05D005598 ORTHO05D006587 6.8e-107 391.0 231 79.2
TPR.G2473 Trifolium pratense HOM05D005598 ORTHO05D006587 6.8e-107 391.0 241 77.2
BcaC02g08374 Brassica carinata HOM05D005598 ORTHO05D006587 8.9e-107 390.6 231 77.9
C04p55060 Brassica napus HOM05D005598 ORTHO05D006587 8.9e-107 390.6 231 77.9
BolC4t27046H Brassica oleracea HOM05D005598 ORTHO05D006587 8.9e-107 390.6 231 77.9
Oeu024809.1 Olea europaea HOM05D005598 ORTHO05D006587 8.9e-107 390.6 264 72.3
A04p19500 Brassica napus HOM05D005598 ORTHO05D006587 1.2e-106 390.2 231 77.9
Sc09g0005330 Simmondsia chinensis HOM05D005598 ORTHO05D006587 5.8e-106 387.9 231 80.1
Nitab4.5_0002586g0090 Nicotiana tabacum HOM05D005598 ORTHO05D006587 3.8e-105 385.2 266 72.6
Os11g0153900 Oryza sativa ssp. japonica HOM05D005598 ORTHO05D006587 2.4e-104 382.5 232 77.2
FAN16G3025 Fragaria x ananassa HOM05D005598 ORTHO05D006587 4.2e-104 381.7 231 77.5
CSS0039611 Camellia sinensis var. sinensis HOM05D005598 ORTHO05D006587 7.1e-104 380.9 248 75.0
Cpa.g.c34135 Carica papaya HOM05D005598 ORTHO05D006587 3.9e-102 375.2 221 79.6
SEGI_12354 Sequoiadendron giganteum HOM05D005598 ORTHO05D006587 5.1e-102 374.8 238 72.7
TWI63G1098 Tripterygium wilfordii HOM05D005598 ORTHO05D006587 3.6e-100 368.6 241 75.1
unitig_736.g22318 Utricularia gibba HOM05D005598 ORTHO05D006587 1.8e-99 366.3 237 71.3
Thhalv10000575m.g Eutrema salsugineum HOM05D005598 ORTHO05D006587 3.4e-98 362.1 231 74.5
Psat0s4121g0080 Pisum sativum HOM05D005598 ORTHO05D006587 1.3e-97 360.1 241 73.4
Dinv11826 Davidia involucrata HOM05D005598 ORTHO05D006587 1.1e-93 347.1 204 82.4
Pp3c13_7860 Physcomitrium patens HOM05D005598 ORTHO05D006587 1.1e-93 347.1 223 71.3
Glyma.10G278500 Glycine max HOM05D005598 ORTHO05D006587 1.3e-92 343.6 207 78.7
Zm00001eb406890 Zea mays HOM05D005598 ORTHO05D006587 1.8e-91 339.7 208 76.4
Mapoly0006s0052 Marchantia polymorpha HOM05D005598 ORTHO05D006587 1.2e-87 327.0 223 65.9
MBI01_g02157_MAGBIO Magnolia biondii HOM05D005598 ORTHO05D006587 6.0e-87 324.7 188 81.9
AagrBONN_evm.TU.Sc2ySwM_362.477 Anthoceros agrestis HOM05D005598 ORTHO05D006587 1.3e-84 317.0 224 65.6
DCAR_006363 Daucus carota HOM05D005598 ORTHO05D006587 5.0e-65 251.9 183 72.1
AL4G16260 Arabidopsis lyrata HOM05D005598 ORTHO05D006587 6.1e-63 245.0 148 76.4
SMO347G0320 Selaginella moellendorffii HOM05D005598 ORTHO05D006587 2.3e-62 243.0 213 56.3
AUR62041514 Chenopodium quinoa HOM05D005598 ORTHO05D006587 4.3e-61 238.8 342 42.4
Lalb_Chr21g0309151 Lupinus albus HOM05D005598 ORTHO05D006587 8.5e-57 224.6 153 74.5
Haze_26455 Corylus avellana HOM05D005598 ORTHO05D006587 1.8e-54 216.9 219 50.2
Cre17.g701350 Chlamydomonas reinhardtii HOM05D005598 ORTHO05D006587 1.3e-52 210.7 220 44.5
Ah.04g160180 Amaranthus hybridus HOM05D005598 ORTHO05D006587 3.5e-50 202.6 119 80.7
Psat4g059000 Pisum sativum HOM05D005598 ORTHO05D006587 1.7e-49 200.3 115 78.3
CBR_g29781 Chara braunii HOM05D005598 ORTHO05D006587 1.0e-46 191.0 193 52.8
CiPaw.14G033400 Carya illinoinensis HOM05D005598 ORTHO05D006587 9.7e-45 184.5 207 54.6
Glyma.07G162800 Glycine max HOM05D005598 ORTHO05D006587 1.4e-43 180.6 221 48.0
Cfa026153 Carpinus fangiana HOM05D005598 ORTHO05D006587 8.8e-38 161.4 221 42.5
MD02G1261400 Malus domestica HOM05D005598 ORTHO05D006587 1.3e-36 157.5 175 50.9
Psat0s449g0080 Pisum sativum HOM05D000909 ORTHO05D000928 3.7e-28 129.4 74 82.4
Zm00001eb407010 Zea mays HOM05D005598 ORTHO05D006587 1.4e-27 127.5 81 79.0
HanXRQChr05g0158341 Helianthus annuus HOM05D005598 ORTHO05D006587 4.5e-26 122.5 92 66.3
Psat0s1058g0040 Pisum sativum HOM05D005598 ORTHO05D006587 2.6e-21 106.7 52 92.3
Psat4g071240 Pisum sativum HOM05D005598 ORTHO05D006587 2.7e-18 96.7 200 37.0
SEGI_12669 Sequoiadendron giganteum HOM05D005598 ORTHO05D006587 2.7e-18 96.7 55 76.4
Lsat_1_v5_gn_9_94660 Lactuca sativa HOM05D005598 ORTHO05D006587 1.7e-17 94.0 60 73.3
Psat5g185320 Pisum sativum HOM05D000559 ORTHO05D006587 8.6e-17 91.7 56 75.0
MBI01_g19134_MAGBIO Magnolia biondii HOM05D005598 ORTHO05D006587 1.2e-15 87.8 48 79.2
Psat5g299440 Pisum sativum HOM05D005598 ORTHO05D006587 1.8e-14 84.0 111 44.1
Sabra10G0187600 Salix brachista HOM05D005598 ORTHO05D006587 9.8e-13 78.2 59 62.7
Lalb_Chr21g0309141 Lupinus albus HOM05D005598 ORTHO05D006587 2.2e-12 77.0 56 69.6
Cre13.g561900 Chlamydomonas reinhardtii HOM05D016613 ORTHO05D014817 1.2e-07 61.2 182 29.7
Mapoly0023s0164 Marchantia polymorpha HOM05D016613 ORTHO05D014817 1.2e-07 61.2 184 31.0
Psat7g021760 Pisum sativum HOM05D000559 ORTHO05D000596 2.8e-07 60.1 30 83.3
A09p55890 Brassica napus HOM05D005598 ORTHO05D040595 3.6e-07 59.7 75 42.7
BraA09t40992Z Brassica rapa HOM05D005598 ORTHO05D040595 4.7e-07 59.3 53 54.7
Pp3c2_19600 Physcomitrium patens HOM05D016613 ORTHO05D014817 6.2e-07 58.9 168 28.0
Psat6g162040 Pisum sativum HOM05D005598 ORTHO05D006587 1.1e-06 58.2 61 55.7
Psat0s447g0040 Pisum sativum HOM05D005598 ORTHO05D322697 3.1e-06 56.6 115 35.7
SMO118G0286 Selaginella moellendorffii HOM05D016613 ORTHO05D014817 3.1e-06 56.6 171 29.2
BolC8t51460H Brassica oleracea HOM05D005598 ORTHO05D041141 5.2e-06 55.8 51 56.9


User provided reference genes

Program Settings