Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO782G2032 Papaver somniferum HOM05D005292 ORTHO05D006473 9.4e-240 833.2 438 100.0
PSO478G4449 Papaver somniferum HOM05D005292 ORTHO05D006473 1.1e-216 756.5 439 92.7
GSVIVG01004916001 Vitis vinifera HOM05D005292 ORTHO05D006473 6.9e-158 561.2 315 86.0
Cfa012803 Carpinus fangiana HOM05D005292 ORTHO05D006473 7.1e-155 551.2 439 65.8
CANSAT80G2034 Cannabis sativa HOM05D005292 ORTHO05D006473 2.7e-154 549.3 321 82.6
Oeu016513.1 Olea europaea HOM05D005292 ORTHO05D006473 2.7e-154 549.3 316 82.3
Nn1g01261 Nelumbo nucifera HOM05D005292 ORTHO05D006473 1.0e-153 547.4 316 82.6
Cpa.g.sc29.95 Carica papaya HOM05D005292 ORTHO05D006473 3.0e-153 545.8 319 82.4
Atru.chr9.1428 Acer truncatum HOM05D005292 ORTHO05D006473 5.1e-153 545.0 317 82.6
CiPaw.11G147800 Carya illinoinensis HOM05D005292 ORTHO05D006473 4.3e-152 542.0 317 81.7
QL12p014915 Quercus lobata HOM05D005292 ORTHO05D006473 5.6e-152 541.6 321 82.6
COL.COLO4_31983 Corchorus olitorius HOM05D005292 ORTHO05D006473 9.6e-152 540.8 310 83.2
Duzib084G0213 Durio zibethinus HOM05D005292 ORTHO05D006473 9.6e-152 540.8 310 82.3
Thecc.03G261400 Theobroma cacao HOM05D005292 ORTHO05D006473 9.6e-152 540.8 302 84.4
Ciclev10020454m.g Citrus clementina HOM05D005292 ORTHO05D006473 8.2e-151 537.7 321 80.7
Glyma.05G052500 Glycine max HOM05D005292 ORTHO05D006473 6.9e-150 534.6 319 81.5
Glyma.17G134700 Glycine max HOM05D005292 ORTHO05D006473 6.9e-150 534.6 319 81.5
TPR.G37684 Trifolium pratense HOM05D005292 ORTHO05D006473 9.0e-150 534.3 297 84.5
arahy.Tifrunner.gnm1.ann1.VS5X7Y Arachis hypogaea HOM05D005292 ORTHO05D006473 1.2e-149 533.9 320 81.9
arahy.Tifrunner.gnm1.ann1.YRMJ3W Arachis hypogaea HOM05D005292 ORTHO05D006473 1.2e-149 533.9 320 81.9
Psat4g068120 Pisum sativum HOM05D005292 ORTHO05D006473 4.5e-149 531.9 304 83.9
TWI15G0139 Tripterygium wilfordii HOM05D005292 ORTHO05D006473 5.8e-149 531.6 298 83.9
Medtr4g102260 Medicago truncatula HOM05D005292 ORTHO05D006473 7.6e-149 531.2 305 83.6
VMungo1215G1740 Vigna mungo HOM05D005292 ORTHO05D006473 1.0e-148 530.8 319 80.9
Lj4g0005126 Lotus japonicus HOM05D005292 ORTHO05D006473 1.3e-148 530.4 439 64.5
Prupe.5G079200 Prunus persica HOM05D005292 ORTHO05D006473 2.2e-148 529.6 437 64.1
CSS0004035 Camellia sinensis var. sinensis HOM05D005292 ORTHO05D006473 2.9e-148 529.3 299 83.9
MD04G1079900 Malus domestica HOM05D005292 ORTHO05D006473 3.8e-148 528.9 320 81.2
Potri.001G118000 Populus trichocarpa HOM05D005292 ORTHO05D006473 6.5e-148 528.1 307 82.1
Potri.003G114900 Populus trichocarpa HOM05D005292 ORTHO05D006473 6.5e-148 528.1 305 82.6
Dinv21573 Davidia involucrata HOM05D005292 ORTHO05D006473 8.4e-148 527.7 286 86.7
CiPaw.12G105300 Carya illinoinensis HOM05D005292 ORTHO05D006473 1.1e-147 527.3 321 80.7
PGR031G2306 Punica granatum HOM05D005292 ORTHO05D006473 1.1e-147 527.3 309 81.6
Manes.02G033900 Manihot esculenta HOM05D005292 ORTHO05D006473 1.4e-147 526.9 426 65.5
Aqoxy7G00654 Aquilegia oxysepala HOM05D005292 ORTHO05D006473 2.5e-147 526.2 297 84.5
MSTRG.12063 Avicennia marina HOM05D005292 ORTHO05D006473 2.5e-147 526.2 318 79.6
Phvul.003G214500 Phaseolus vulgaris HOM05D005292 ORTHO05D006473 3.2e-147 525.8 319 80.3
TAR636G1323 Trochodendron aralioides HOM05D005292 ORTHO05D006473 4.2e-147 525.4 316 81.6
Ca_12278_v3 Cicer arietinum L. HOM05D005292 ORTHO05D006473 7.1e-147 524.6 424 64.4
Lj8A255T56 Lonicera japonica HOM05D005292 ORTHO05D006473 7.1e-147 524.6 307 81.8
FAN08G1347 Fragaria x ananassa HOM05D005292 ORTHO05D006473 1.2e-146 523.9 291 86.3
FAN18G3339 Fragaria x ananassa HOM05D005292 ORTHO05D006473 1.2e-146 523.9 291 86.3
Gohir.A03G012000 Gossypium hirsutum HOM05D005292 ORTHO05D006473 1.2e-146 523.9 307 81.4
Eucgr.D01991 Eucalyptus grandis HOM05D005292 ORTHO05D006473 2.7e-146 522.7 327 78.6
Lalb_Chr05g0225431 Lupinus albus HOM05D005292 ORTHO05D006473 2.7e-146 522.7 319 81.2
FAN04G0899 Fragaria x ananassa HOM05D005292 ORTHO05D006473 6.1e-146 521.5 291 85.9
Gohir.D03G157800 Gossypium hirsutum HOM05D005292 ORTHO05D006473 6.1e-146 521.5 315 79.7
THA.LOC104813867 Tarenaya hassleriana HOM05D005292 ORTHO05D006473 6.1e-146 521.5 296 82.1
FAN13G3324 Fragaria x ananassa HOM05D005292 ORTHO05D006473 1.0e-145 520.8 291 85.9
Gohir.D12G223000 Gossypium hirsutum HOM05D005292 ORTHO05D006473 1.0e-145 520.8 315 78.7
Peaxi162Scf00271g00021 Petunia axillaris HOM05D005292 ORTHO05D006473 1.0e-145 520.8 312 79.5
Nitab4.5_0003534g0020 Nicotiana tabacum HOM05D005292 ORTHO05D006473 1.8e-145 520.0 301 82.1
CDE09G1063 Ceratophyllum demersum HOM05D005292 ORTHO05D006473 2.3e-145 519.6 308 78.2
Cc08_g13210 Coffea canephora HOM05D005292 ORTHO05D006473 2.3e-145 519.6 294 84.4
CAN.G630.87 Capsicum annuum HOM05D005292 ORTHO05D006473 3.9e-145 518.8 312 79.5
Gohir.A11G020400 Gossypium hirsutum HOM05D005292 ORTHO05D006473 3.9e-145 518.8 302 82.5
Gorai.007G021400 Gossypium raimondii HOM05D005292 ORTHO05D006473 5.1e-145 518.5 306 82.0
Actinidia02093 Actinidia chinensis HOM05D005292 ORTHO05D006473 6.7e-145 518.1 293 83.3
RcHm_v2.0_Chr7g0201621 Rosa chinensis HOM05D005292 ORTHO05D006473 1.1e-144 517.3 291 85.2
Gorai.003G166300 Gossypium raimondii HOM05D005292 ORTHO05D006473 1.9e-144 516.5 307 80.5
PGSC0003DMG400003959 Solanum tuberosum HOM05D005292 ORTHO05D006473 1.9e-144 516.5 295 83.1
SGA_v2.0_scaffold120G32820 Striga asiatica HOM05D005292 ORTHO05D006473 1.9e-144 516.5 338 74.9
Sc22g0000600 Simmondsia chinensis HOM05D005292 ORTHO05D006473 5.7e-144 515.0 315 77.1
Hma1.2p1_0367F.1_g137040 Hydrangea macrophylla HOM05D005292 ORTHO05D006473 1.3e-143 513.8 307 79.2
Sed0004099 Sechium edule HOM05D005292 ORTHO05D006473 1.3e-143 513.8 317 78.2
Sopen08g027820 Solanum pennellii HOM05D005292 ORTHO05D006473 1.6e-143 513.5 317 77.9
Solyc08g079450.3 Solanum lycopersicum HOM05D005292 ORTHO05D006473 3.7e-143 512.3 312 78.8
Nitab4.5_0007591g0040 Nicotiana tabacum HOM05D005292 ORTHO05D006473 8.2e-143 511.1 288 83.7
EL10Ac5g12610 Beta vulgaris HOM05D005292 ORTHO05D006473 1.8e-142 510.0 315 77.5
Migut.A00832 Erythranthe guttata HOM05D005292 ORTHO05D006473 1.8e-142 510.0 280 84.6
Gohir.D11G020100 Gossypium hirsutum HOM05D005292 ORTHO05D006473 2.4e-142 509.6 302 81.1
CsaV3_5G003780 Cucumis sativus L. HOM05D005292 ORTHO05D006473 3.1e-142 509.2 302 81.1
SalBow1G6483 Salvia bowleyana HOM05D005292 ORTHO05D006473 4.1e-142 508.8 334 74.3
Gorai.008G239300 Gossypium raimondii HOM05D005292 ORTHO05D006473 9.0e-142 507.7 340 72.9
MBI12_g31646_MAGBIO Magnolia biondii HOM05D005292 ORTHO05D006473 2.0e-141 506.5 304 80.3
Sp6g05330 Schrenkiella parvula HOM05D005292 ORTHO05D006473 3.4e-141 505.8 301 79.1
Hund14648 Selenicereus undatus HOM05D005292 ORTHO05D006473 3.4e-141 505.8 316 76.9
AL6G47090 Arabidopsis lyrata HOM05D005292 ORTHO05D006473 4.5e-141 505.4 280 83.2
Thhalv10028717m.g Eutrema salsugineum HOM05D005292 ORTHO05D006473 7.7e-141 504.6 294 80.3
ECA233G3282 Erigeron canadensis HOM05D005292 ORTHO05D006473 1.7e-140 503.4 294 81.0
AT4G12230 Arabidopsis thaliana HOM05D005292 ORTHO05D006473 3.8e-140 502.3 299 78.9
HanXRQChr02g0046251 Helianthus annuus HOM05D005292 ORTHO05D006473 3.8e-140 502.3 316 76.9
CARHR254020 Cardamine hirsuta HOM05D005292 ORTHO05D006473 6.5e-140 501.5 294 79.6
Carub.0006s3135 Capsella rubella HOM05D005292 ORTHO05D006473 1.4e-139 500.4 305 77.4
AUR62010507 Chenopodium quinoa HOM05D005292 ORTHO05D006473 1.4e-139 500.4 308 76.9
BcaC01g04601 Brassica carinata HOM05D005292 ORTHO05D006473 1.9e-139 500.0 280 82.5
BraA03t12155Z Brassica rapa HOM05D005292 ORTHO05D006473 1.9e-139 500.0 289 80.6
BcaB01g02654 Brassica carinata HOM05D005292 ORTHO05D006473 4.2e-139 498.8 280 82.1
A03p29600 Brassica napus HOM05D005292 ORTHO05D006473 4.2e-139 498.8 289 80.3
HanXRQChr07g0188671 Helianthus annuus HOM05D005292 ORTHO05D006473 9.4e-139 497.7 326 75.2
Gohir.A12G220700 Gossypium hirsutum HOM05D005292 ORTHO05D006473 2.1e-138 496.5 322 74.8
C03p35880 Brassica napus HOM05D005292 ORTHO05D006473 4.6e-138 495.4 281 82.2
BolC3t15896H Brassica oleracea HOM05D005292 ORTHO05D006473 4.6e-138 495.4 281 82.2
Aa31LG9G10310 Aethionema arabicum HOM05D005292 ORTHO05D006473 1.1e-136 490.7 321 73.2
DCAR_006803 Daucus carota HOM05D005292 ORTHO05D006473 2.5e-136 489.6 304 77.3
vmacro14043 Vaccinium macrocarpon HOM05D005292 ORTHO05D006473 5.3e-134 481.9 288 79.9
Ah.12g058260 Amaranthus hybridus HOM05D005292 ORTHO05D006473 2.0e-133 479.9 346 68.8
Ah.02g116220 Amaranthus hybridus HOM05D005292 ORTHO05D006473 3.4e-133 479.2 266 82.0
Os10g0169800 Oryza sativa ssp. japonica HOM05D005292 ORTHO05D006473 1.0e-132 477.6 314 71.3
Sabra01G0090700 Salix brachista HOM05D005292 ORTHO05D006473 3.8e-132 475.7 391 62.7
ClCG01G003660 Citrullus lanatus HOM05D005292 ORTHO05D006473 6.5e-132 474.9 320 73.8
Dinv39082 Davidia involucrata HOM05D005292 ORTHO05D006473 1.4e-131 473.8 321 73.5
Lsat_1_v5_gn_6_9841 Lactuca sativa HOM05D005292 ORTHO05D006473 2.5e-131 473.0 265 84.2
CDE11G0205 Ceratophyllum demersum HOM05D005292 ORTHO05D006473 9.4e-131 471.1 284 77.8
Haze_08610 Corylus avellana HOM05D005292 ORTHO05D006473 3.6e-130 469.2 382 65.2
Zm00001eb026990 Zea mays HOM05D005292 ORTHO05D006473 7.9e-130 468.0 299 72.6
unitig_744.g24320 Utricularia gibba HOM05D005292 ORTHO05D006473 1.8e-129 466.8 337 68.0
ATR0757G031 Amborella trichopoda HOM05D005292 ORTHO05D006473 3.9e-129 465.7 266 82.3
AUR62017394 Chenopodium quinoa HOM05D005292 ORTHO05D006473 8.2e-127 458.0 294 73.8
Nn4g26373 Nelumbo nucifera HOM05D005292 ORTHO05D006473 8.2e-127 458.0 319 71.8
TWI15G0397 Tripterygium wilfordii HOM05D005292 ORTHO05D006473 1.6e-122 443.7 296 74.3
HPP92_014608 Vanilla planifolia HOM05D005292 ORTHO05D006473 8.0e-122 441.4 421 56.5
Pp3c6_20320 Physcomitrium patens HOM05D005292 ORTHO05D006473 7.2e-115 418.3 278 69.8
SEGI_16146 Sequoiadendron giganteum HOM05D005292 ORTHO05D006473 9.4e-115 417.9 304 65.1
SMO223G0031 Selaginella moellendorffii HOM05D005292 ORTHO05D006473 6.8e-113 411.8 274 67.9
Mapoly0066s0051 Marchantia polymorpha HOM05D005292 ORTHO05D006473 2.8e-111 406.4 291 66.3
FvH4_5g00640 Fragaria vesca HOM05D005292 ORTHO05D006473 4.8e-111 405.6 226 87.2
Sabra03G0079600 Salix brachista HOM05D005292 ORTHO05D006473 1.1e-110 404.4 219 87.2
AagrBONN_evm.TU.Sc2ySwM_368.248 Anthoceros agrestis HOM05D005292 ORTHO05D006473 1.4e-110 404.1 305 64.6
Rhsim07G0101700 Rhododendron simsii HOM05D005292 ORTHO05D006473 5.3e-110 402.1 343 62.1
TAR629G1108 Trochodendron aralioides HOM05D005292 ORTHO05D006473 1.6e-98 364.0 183 90.7
Duzib205G1434 Durio zibethinus HOM05D005292 ORTHO05D006473 2.3e-97 360.1 315 61.6
Oeu022319.3 Olea europaea HOM05D005292 ORTHO05D006473 2.3e-92 343.6 439 48.5
Actinidia14462 Actinidia chinensis HOM05D005292 ORTHO05D006473 1.4e-89 334.3 292 58.9
Aa31LG11G5120 Aethionema arabicum HOM05D005292 ORTHO05D006473 4.0e-73 279.6 155 80.6
MD06G1074900 Malus domestica HOM05D005292 ORTHO05D006473 4.4e-72 276.2 147 85.0
Dinv37766 Davidia involucrata HOM05D005292 ORTHO05D006473 5.2e-65 252.7 145 83.4
Lsat_1_v5_gn_8_156781 Lactuca sativa HOM05D005292 ORTHO05D006473 5.4e-46 189.5 173 60.1
Lsat_1_v5_gn_2_99060 Lactuca sativa HOM05D005292 ORTHO05D006473 9.6e-43 178.7 120 74.2
Lsat_1_v5_gn_8_88300 Lactuca sativa HOM05D005292 ORTHO05D006473 3.1e-41 173.7 216 46.3
MELO3C005579.2 Cucumis melo HOM05D005292 ORTHO05D006473 5.3e-41 172.9 120 75.0
Lsat_1_v5_gn_8_99640 Lactuca sativa HOM05D005292 ORTHO05D006473 3.9e-36 156.8 161 54.0
SEGI_25328 Sequoiadendron giganteum HOM05D005292 ORTHO05D006473 8.7e-36 155.6 94 68.1
SEGI_08273 Sequoiadendron giganteum HOM05D005292 ORTHO05D006473 5.5e-30 136.3 84 79.8
CDE11G1060 Ceratophyllum demersum HOM05D005292 ORTHO05D006473 1.1e-27 128.6 66 83.3
Cc08_g13200 Coffea canephora HOM05D005292 ORTHO05D006473 5.7e-27 126.3 66 84.8
TAR636G3691 Trochodendron aralioides HOM05D005292 ORTHO05D006473 2.2e-26 124.4 99 63.6
MD06G1074800 Malus domestica HOM05D005292 ORTHO05D006473 4.1e-25 120.2 72 83.3
SEGI_15988 Sequoiadendron giganteum HOM05D005292 ORTHO05D006473 5.0e-23 113.2 65 81.5
Glyma.05G052200 Glycine max HOM05D005292 ORTHO05D006473 5.5e-22 109.8 112 55.4
TWI81G0363 Tripterygium wilfordii HOM05D005292 ORTHO05D006473 2.1e-21 107.8 71 74.6
Eucgr.C02046 Eucalyptus grandis HOM05D005292 ORTHO05D006473 1.8e-17 94.7 66 72.7
vmacro17465 Vaccinium macrocarpon HOM05D002883 ORTHO05D003116 2.5e-14 84.3 66 60.6


User provided reference genes

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