Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO700G0269 Papaver somniferum HOM05D005339 ORTHO05D006561 5.3e-174 614.4 339 100.0
PSO170G1371 Papaver somniferum HOM05D005339 ORTHO05D006561 2.2e-172 609.0 339 99.4
Aqoxy5G01796 Aquilegia oxysepala HOM05D005339 ORTHO05D006561 1.1e-150 537.0 339 89.1
ATR0810G182 Amborella trichopoda HOM05D005339 ORTHO05D006561 2.9e-148 528.9 339 87.0
Actinidia20485 Actinidia chinensis HOM05D005339 ORTHO05D006561 1.1e-147 526.9 339 87.0
CSS0049457 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 1.5e-147 526.6 339 85.8
Thecc.02G066900 Theobroma cacao HOM05D005339 ORTHO05D006561 1.5e-147 526.6 339 86.7
CDE04G0258 Ceratophyllum demersum HOM05D005339 ORTHO05D006561 1.9e-147 526.2 339 86.7
Rhsim11G0187800 Rhododendron simsii HOM05D005339 ORTHO05D006561 1.9e-147 526.2 339 86.4
ClCG02G011380 Citrullus lanatus HOM05D005339 ORTHO05D006561 3.2e-147 525.4 339 87.3
CsaV3_2G015710 Cucumis sativus L. HOM05D005339 ORTHO05D006561 3.2e-147 525.4 339 87.3
PGR142G1539 Punica granatum HOM05D005339 ORTHO05D006561 2.7e-146 522.3 339 85.8
PGSC0003DMG400001633 Solanum tuberosum HOM05D005339 ORTHO05D006561 3.6e-146 521.9 339 87.3
GSVIVG01024083001 Vitis vinifera HOM05D005339 ORTHO05D006561 8.0e-146 520.8 339 87.3
Cfa005184 Carpinus fangiana HOM05D005339 ORTHO05D006561 1.0e-145 520.4 339 85.5
Gohir.A03G203200 Gossypium hirsutum HOM05D005339 ORTHO05D006561 1.0e-145 520.4 339 86.4
Gorai.005G252300 Gossypium raimondii HOM05D005339 ORTHO05D006561 1.0e-145 520.4 339 86.4
Eucgr.I01375 Eucalyptus grandis HOM05D005339 ORTHO05D006561 1.8e-145 519.6 339 85.3
Manes.04G078200 Manihot esculenta HOM05D005339 ORTHO05D006561 1.8e-145 519.6 339 86.7
Potri.004G168400 Populus trichocarpa HOM05D005339 ORTHO05D006561 1.8e-145 519.6 339 87.0
Sabra04G0112800 Salix brachista HOM05D005339 ORTHO05D006561 1.8e-145 519.6 339 87.0
Gohir.D02G224500 Gossypium hirsutum HOM05D005339 ORTHO05D006561 2.3e-145 519.2 339 86.4
CANSAT25G3263 Cannabis sativa HOM05D005339 ORTHO05D006561 5.2e-145 518.1 339 86.7
CDE02G2588 Ceratophyllum demersum HOM05D005339 ORTHO05D006561 8.8e-145 517.3 339 79.9
MBI19_g09243_MAGBIO Magnolia biondii HOM05D005339 ORTHO05D006561 8.8e-145 517.3 366 82.0
Potri.009G129700 Populus trichocarpa HOM05D005339 ORTHO05D006561 3.4e-144 515.4 339 85.8
RcHm_v2.0_Chr2g0122771 Rosa chinensis HOM05D005339 ORTHO05D006561 3.4e-144 515.4 339 85.5
Os09g0535300 Oryza sativa ssp. japonica HOM05D005339 ORTHO05D006561 7.5e-144 514.2 339 86.4
Ciclev10028803m.g Citrus clementina HOM05D005339 ORTHO05D006561 1.3e-143 513.5 339 81.7
Cc11_g02780 Coffea canephora HOM05D005339 ORTHO05D006561 1.3e-143 513.5 339 84.7
Nn7g36850 Nelumbo nucifera HOM05D005339 ORTHO05D006561 1.7e-143 513.1 323 89.5
Zm00001eb103630 Zea mays HOM05D005339 ORTHO05D006561 2.8e-143 512.3 339 85.8
Hma1.2p1_0032F.1_g019680 Hydrangea macrophylla HOM05D005339 ORTHO05D006561 6.3e-143 511.1 339 85.0
Sed0019675 Sechium edule HOM05D005339 ORTHO05D006561 6.3e-143 511.1 339 84.4
Prupe.7G010600 Prunus persica HOM05D005339 ORTHO05D006561 8.3e-143 510.8 339 84.7
Duzib132G0613 Durio zibethinus HOM05D005339 ORTHO05D006561 1.4e-142 510.0 350 83.4
AT2G21150 Arabidopsis thaliana HOM05D005339 ORTHO05D006561 1.8e-142 509.6 339 82.9
Migut.B00167 Erythranthe guttata HOM05D005339 ORTHO05D006561 2.4e-142 509.2 342 85.1
Glyma.08G042200 Glycine max HOM05D005339 ORTHO05D006561 2.4e-142 509.2 340 85.6
arahy.Tifrunner.gnm1.ann1.RMHT0B Arachis hypogaea HOM05D005339 ORTHO05D006561 3.1e-142 508.8 339 85.3
QL11p047539 Quercus lobata HOM05D005339 ORTHO05D006561 3.1e-142 508.8 338 85.2
QL11p047573 Quercus lobata HOM05D005339 ORTHO05D006561 3.1e-142 508.8 338 85.2
Thhalv10000232m.g Eutrema salsugineum HOM05D005339 ORTHO05D006561 4.1e-142 508.4 339 84.1
Glyma.05G234700 Glycine max HOM05D005339 ORTHO05D006561 5.4e-142 508.1 339 85.0
AL4G10240 Arabidopsis lyrata HOM05D005339 ORTHO05D006561 7.0e-142 507.7 339 82.3
Hund06405 Selenicereus undatus HOM05D005339 ORTHO05D006561 7.0e-142 507.7 339 83.8
Carub.0004s0017 Capsella rubella HOM05D005339 ORTHO05D006561 1.6e-141 506.5 339 82.3
THA.LOC104807785 Tarenaya hassleriana HOM05D005339 ORTHO05D006561 2.0e-141 506.1 339 84.4
Sp4g00300 Schrenkiella parvula HOM05D005339 ORTHO05D006561 2.7e-141 505.8 339 83.5
DCAR_022955 Daucus carota HOM05D005339 ORTHO05D006561 4.5e-141 505.0 357 81.5
DCAR_022956 Daucus carota HOM05D005339 ORTHO05D006561 4.5e-141 505.0 357 81.5
Lalb_Chr11g0072011 Lupinus albus HOM05D005339 ORTHO05D006561 4.5e-141 505.0 339 84.4
TWI31G0803 Tripterygium wilfordii HOM05D005339 ORTHO05D006561 7.7e-141 504.2 339 85.0
BcaB08g34965 Brassica carinata HOM05D005339 ORTHO05D006561 1.0e-140 503.8 342 82.7
Psat7g008680 Pisum sativum HOM05D005339 ORTHO05D006561 1.7e-140 503.1 342 83.6
CAN.G588.26 Capsicum annuum HOM05D005339 ORTHO05D006561 2.3e-140 502.7 339 85.0
vmacro02249 Vaccinium macrocarpon HOM05D005339 ORTHO05D006561 3.8e-140 501.9 339 84.4
HanXRQChr15g0478851 Helianthus annuus HOM05D005339 ORTHO05D006561 6.5e-140 501.1 339 84.7
Atru.chr5.3227 Acer truncatum HOM05D005339 ORTHO05D006561 1.1e-139 500.4 339 84.7
arahy.Tifrunner.gnm1.ann1.UV505Z Arachis hypogaea HOM05D005339 ORTHO05D006561 4.2e-139 498.4 355 81.4
Medtr8g105120 Medicago truncatula HOM05D005339 ORTHO05D006561 4.2e-139 498.4 341 83.3
SGA_v2.0_scaffold58G20457 Striga asiatica HOM05D005339 ORTHO05D006561 5.5e-139 498.0 360 80.8
CiPaw.06G125300 Carya illinoinensis HOM05D005339 ORTHO05D006561 7.2e-139 497.7 339 83.8
AUR62010093 Chenopodium quinoa HOM05D005339 ORTHO05D006561 7.2e-139 497.7 339 82.6
Peaxi162Scf00362g01036 Petunia axillaris HOM05D005339 ORTHO05D006561 9.5e-139 497.3 339 84.4
C04p50370 Brassica napus HOM05D005339 ORTHO05D006561 2.8e-138 495.7 339 82.6
BolC4t26635H Brassica oleracea HOM05D005339 ORTHO05D006561 2.8e-138 495.7 339 82.6
CiPaw.05G077200 Carya illinoinensis HOM05D005339 ORTHO05D006561 4.7e-138 495.0 339 82.6
Nitab4.5_0000283g0140 Nicotiana tabacum HOM05D005339 ORTHO05D006561 6.1e-138 494.6 339 84.4
Nitab4.5_0000980g0240 Nicotiana tabacum HOM05D005339 ORTHO05D006561 6.1e-138 494.6 339 84.4
Solyc01g111140.3 Solanum lycopersicum HOM05D005339 ORTHO05D006561 6.1e-138 494.6 339 84.4
Sopen01g053200 Solanum pennellii HOM05D005339 ORTHO05D006561 6.1e-138 494.6 339 84.4
MD14G1006100 Malus domestica HOM05D005339 ORTHO05D006561 8.0e-138 494.2 339 82.0
FvH4_1g25110 Fragaria vesca HOM05D005339 ORTHO05D006561 5.2e-137 491.5 339 83.5
Phvul.002G320300 Phaseolus vulgaris HOM05D005339 ORTHO05D006561 6.8e-137 491.1 341 83.3
Sabra09G0099200 Salix brachista HOM05D005339 ORTHO05D006561 1.5e-136 490.0 373 77.5
A09p58500 Brassica napus HOM05D005339 ORTHO05D006561 2.6e-136 489.2 346 80.3
C08p41800 Brassica napus HOM05D005339 ORTHO05D006561 2.8e-135 485.7 351 79.8
MD12G1008800 Malus domestica HOM05D005339 ORTHO05D006561 2.8e-135 485.7 339 80.8
ECA246G3996 Erigeron canadensis HOM05D005339 ORTHO05D006561 3.7e-135 485.3 332 84.0
Lj9C389T6 Lonicera japonica HOM05D005339 ORTHO05D006561 4.9e-135 485.0 378 75.4
Pp3c17_13560 Physcomitrium patens HOM05D005339 ORTHO05D006561 8.3e-135 484.2 341 79.2
VMungo0251G0038 Vigna mungo HOM05D005339 ORTHO05D006561 4.1e-134 481.9 341 82.1
BolC8t51743H Brassica oleracea HOM05D005339 ORTHO05D006561 7.0e-134 481.1 348 79.3
AagrBONN_evm.TU.Sc2ySwM_344.4430 Anthoceros agrestis HOM05D005339 ORTHO05D006561 1.2e-133 480.3 340 81.8
unitig_744.g24266 Utricularia gibba HOM05D005339 ORTHO05D006561 2.0e-133 479.6 353 78.2
BcaC07g41172 Brassica carinata HOM05D005339 ORTHO05D006561 2.7e-133 479.2 335 81.8
Lj4g0026543 Lotus japonicus HOM05D005339 ORTHO05D006561 5.9e-133 478.0 323 84.8
Mapoly0015s0022 Marchantia polymorpha HOM05D005339 ORTHO05D006561 2.3e-132 476.1 339 77.3
LjContig00310g0009118 Lotus japonicus HOM05D005339 ORTHO05D006561 8.6e-132 474.2 339 81.1
SMO117G0089 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 1.5e-131 473.4 339 80.2
Dinv41975 Davidia involucrata HOM05D005339 ORTHO05D006561 3.3e-131 472.2 339 81.1
TAR376G0223 Trochodendron aralioides HOM05D005339 ORTHO05D006561 7.3e-131 471.1 307 89.6
BraA09t41237Z Brassica rapa HOM05D005339 ORTHO05D006561 2.1e-130 469.5 368 74.7
Ca_17265_v3 Cicer arietinum L. HOM05D005339 ORTHO05D006561 2.1e-130 469.5 326 83.4
Ca_17286_v3 Cicer arietinum L. HOM05D005339 ORTHO05D006561 2.1e-130 469.5 326 83.4
Oeu055639.3 Olea europaea HOM05D005339 ORTHO05D006561 3.6e-130 468.8 339 80.2
Aa31LG7G15530 Aethionema arabicum HOM05D005339 ORTHO05D006561 8.0e-130 467.6 332 81.3
SalBow6G1349 Salvia bowleyana HOM05D005339 ORTHO05D006561 1.4e-129 466.8 351 78.1
Lalb_Chr23g0275171 Lupinus albus HOM05D005339 ORTHO05D006561 8.9e-129 464.2 323 82.7
FAN23G1071 Fragaria x ananassa HOM05D005339 ORTHO05D006561 2.9e-127 459.1 339 79.9
Ah.01g009160 Amaranthus hybridus HOM05D005339 ORTHO05D006561 2.4e-126 456.1 339 77.0
Haze_02197 Corylus avellana HOM05D005339 ORTHO05D006561 3.0e-124 449.1 339 70.5
AUR62013089 Chenopodium quinoa HOM05D005339 ORTHO05D006561 5.0e-124 448.4 339 77.6
A04p15920 Brassica napus HOM05D005339 ORTHO05D006561 6.6e-124 448.0 339 77.6
FAN28G0542 Fragaria x ananassa HOM05D005339 ORTHO05D006561 8.6e-124 447.6 367 73.6
FAN28G2786 Fragaria x ananassa HOM05D005339 ORTHO05D006561 8.6e-124 447.6 367 73.6
BraA04t17225Z Brassica rapa HOM05D005339 ORTHO05D006561 1.4e-113 413.7 516 54.1
TPR.G17076 Trifolium pratense HOM05D005339 ORTHO05D006561 5.2e-113 411.8 285 82.5
EL10Ac9g21438 Beta vulgaris HOM05D005339 ORTHO05D006561 6.8e-113 411.4 354 70.6
Lsat_1_v5_gn_3_45301 Lactuca sativa HOM05D005339 ORTHO05D006561 1.5e-112 410.2 297 82.8
Manes.11G090000 Manihot esculenta HOM05D005339 ORTHO05D006561 8.6e-108 394.4 276 85.1
Sc08g0003210 Simmondsia chinensis HOM05D005339 ORTHO05D006561 3.1e-105 386.0 226 83.6
COL.COLO4_17257 Corchorus olitorius HOM05D005339 ORTHO05D003646 1.9e-102 376.7 335 71.3
FAN19G3054 Fragaria x ananassa HOM05D005339 ORTHO05D006561 9.2e-102 374.4 345 68.7
Cpa.g.sc37.191 Carica papaya HOM05D005339 ORTHO05D006561 4.7e-98 362.1 322 71.1
MELO3C020783.2 Cucumis melo HOM05D005339 ORTHO05D006561 1.1e-97 360.9 257 86.0
Pp3c2_11550 Physcomitrium patens HOM05D005339 ORTHO05D006561 7.1e-94 348.2 278 75.5
HPP92_028582 Vanilla planifolia HOM05D005339 ORTHO05D006561 7.1e-94 348.2 339 66.4
FAN26G3137 Fragaria x ananassa HOM05D005339 ORTHO05D006561 8.7e-92 341.3 339 64.0
Cre07.g341300 Chlamydomonas reinhardtii HOM05D005339 ORTHO05D006561 9.9e-88 327.8 383 48.8
MCO15G465 Micromonas commoda HOM05D005339 ORTHO05D006561 7.6e-80 301.6 332 53.9
VMungo0251G1189 Vigna mungo HOM05D005339 ORTHO05D006561 4.2e-78 295.8 147 93.2
QL11p047601 Quercus lobata HOM05D005339 ORTHO05D006561 4.1e-65 252.7 183 71.0
SEGI_00782 Sequoiadendron giganteum HOM05D005339 ORTHO05D006561 1.0e-63 248.1 213 77.9
PRCOL_00006995 Prasinoderma coloniale HOM05D005339 ORTHO05D006561 1.5e-59 234.2 326 44.5
CBR_g47091 Chara braunii HOM05D005339 ORTHO05D006561 3.6e-53 213.0 116 86.2
CARHR112000 Cardamine hirsuta HOM05D005339 ORTHO05D006561 6.1e-45 185.7 166 68.1
CSS0019608 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 7.7e-40 168.7 82 91.5
CSS0027179 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 3.2e-38 163.3 91 87.9
VMungo0251G1261 Vigna mungo HOM05D005339 ORTHO05D006561 2.8e-34 150.2 90 88.9
Actinidia00595 Actinidia chinensis HOM05D005339 ORTHO05D006561 4.8e-34 149.4 90 86.7
TPR.G35331 Trifolium pratense HOM05D005339 ORTHO05D006561 1.1e-22 111.7 55 94.5
Phvul.002G320400 Phaseolus vulgaris HOM05D005339 ORTHO05D006561 2.0e-19 100.9 45 100.0
MCO03G074 Micromonas commoda HOM05D005339 ORTHO05D006561 1.6e-16 91.3 201 27.9
CSS0035622 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 6.1e-13 79.3 85 81.2
RcHm_v2.0_Chr5g0045021 Rosa chinensis HOM05D005339 ORTHO05D006561 1.4e-12 78.2 39 87.2
Cfa025584 Carpinus fangiana HOM05D005339 ORTHO05D006561 3.1e-12 77.0 269 26.8
TPR.G17724 Trifolium pratense HOM05D005339 ORTHO05D006561 8.9e-12 75.5 41 90.2
SMO274G0062 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 1.2e-11 75.1 64 57.8
Actinidia00596 Actinidia chinensis HOM05D003396 ORTHO05D003646 2.9e-10 70.5 45 73.3
SMO301G0014 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 1.9e-09 67.8 54 61.1
Migut.O00339 Erythranthe guttata HOM05D005339 ORTHO05D006561 5.0e-07 59.7 30 80.0


User provided reference genes

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