Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO541G0162 Papaver somniferum HOM05D004582 ORTHO05D005507 8.1e-66 253.4 116 100.0
PSO675G8561 Papaver somniferum HOM05D004582 ORTHO05D005507 8.1e-66 253.4 116 100.0
PSO339G5842 Papaver somniferum HOM05D004582 ORTHO05D005507 2.3e-60 235.3 116 92.2
Aqoxy3G01747 Aquilegia oxysepala HOM05D004582 ORTHO05D005507 1.0e-55 219.9 113 85.0
Aqoxy5G02794 Aquilegia oxysepala HOM05D004582 ORTHO05D005507 6.5e-55 217.2 114 84.2
MSTRG.1036 Avicennia marina HOM05D004582 ORTHO05D005507 3.5e-53 211.5 113 82.3
Hund08683 Selenicereus undatus HOM05D004582 ORTHO05D005507 4.6e-53 211.1 114 82.5
ATR0693G307 Amborella trichopoda HOM05D004582 ORTHO05D005507 6.1e-53 210.7 114 78.9
MBI11_g25051_MAGBIO Magnolia biondii HOM05D004582 ORTHO05D005507 6.1e-53 210.7 114 82.5
TAR629G2421 Trochodendron aralioides HOM05D004582 ORTHO05D005507 6.1e-53 210.7 114 81.6
Hma1.2p1_2673F.1_g326700 Hydrangea macrophylla HOM05D004582 ORTHO05D005507 1.3e-52 209.5 116 80.2
MSTRG.25043 Avicennia marina HOM05D004582 ORTHO05D005507 1.8e-52 209.1 113 82.3
CSS0028000 Camellia sinensis var. sinensis HOM05D004582 ORTHO05D005507 2.3e-52 208.8 114 80.7
Potri.008G002400 Populus trichocarpa HOM05D004582 ORTHO05D005507 3.0e-52 208.4 113 80.5
GSVIVG01034346001 Vitis vinifera HOM05D004582 ORTHO05D005507 3.0e-52 208.4 114 80.7
Potri.010G255000 Populus trichocarpa HOM05D004582 ORTHO05D005507 3.9e-52 208.0 113 80.5
SalBow6G5789 Salvia bowleyana HOM05D004582 ORTHO05D005507 5.1e-52 207.6 111 82.0
SalBow8G4318 Salvia bowleyana HOM05D004582 ORTHO05D005507 5.1e-52 207.6 111 82.0
HanXRQChr15g0475831 Helianthus annuus HOM05D004582 ORTHO05D005507 6.7e-52 207.2 114 81.6
Nn8g39808 Nelumbo nucifera HOM05D004582 ORTHO05D005507 6.7e-52 207.2 120 80.0
Migut.N02765 Erythranthe guttata HOM05D004582 ORTHO05D005507 8.7e-52 206.8 111 83.8
Lsat_1_v5_gn_1_108541 Lactuca sativa HOM05D004582 ORTHO05D005507 8.7e-52 206.8 114 78.9
SGA_v2.0_scaffold231G43443 Striga asiatica HOM05D004582 ORTHO05D005507 8.7e-52 206.8 113 79.6
Solyc04g008750.3 Solanum lycopersicum HOM05D004582 ORTHO05D005507 2.5e-51 205.3 113 79.6
Sopen04g003930 Solanum pennellii HOM05D004582 ORTHO05D005507 2.5e-51 205.3 113 79.6
PGSC0003DMG400025297 Solanum tuberosum HOM05D004582 ORTHO05D005507 3.3e-51 204.9 113 79.6
Thecc.02G151700 Theobroma cacao HOM05D004582 ORTHO05D005507 3.3e-51 204.9 110 82.7
Sc06g0007770 Simmondsia chinensis HOM05D004582 ORTHO05D005507 4.3e-51 204.5 114 80.7
CAN.G419.18 Capsicum annuum HOM05D004582 ORTHO05D005507 7.4e-51 203.8 110 80.9
Ciclev10017231m.g Citrus clementina HOM05D004582 ORTHO05D005507 7.4e-51 203.8 110 81.8
Cc11_g00370 Coffea canephora HOM05D004582 ORTHO05D005507 7.4e-51 203.8 110 81.8
Sed0002882 Sechium edule HOM05D004582 ORTHO05D005507 7.4e-51 203.8 113 80.5
MELO3C023752.2 Cucumis melo HOM05D004582 ORTHO05D005507 1.6e-50 202.6 110 81.8
CsaV3_3G020290 Cucumis sativus L. HOM05D004582 ORTHO05D005507 1.6e-50 202.6 110 81.8
Nitab4.5_0000129g0010 Nicotiana tabacum HOM05D004582 ORTHO05D005507 1.6e-50 202.6 110 81.8
Manes.01G004880 Manihot esculenta HOM05D004582 ORTHO05D005507 2.8e-50 201.8 110 80.0
Duzib248G0155 Durio zibethinus HOM05D004582 ORTHO05D005507 3.7e-50 201.4 110 81.8
CANSAT78G1495 Cannabis sativa HOM05D004582 ORTHO05D005507 4.8e-50 201.1 110 80.0
Cfa005243 Carpinus fangiana HOM05D004582 ORTHO05D005507 4.8e-50 201.1 110 80.0
Sed0027851 Sechium edule HOM05D004582 ORTHO05D005507 4.8e-50 201.1 110 80.9
Actinidia04370 Actinidia chinensis HOM05D004582 ORTHO05D005507 1.1e-49 199.9 110 80.0
Gohir.A04G109900 Gossypium hirsutum HOM05D004582 ORTHO05D005507 1.1e-49 199.9 110 80.9
Gohir.D04G150100 Gossypium hirsutum HOM05D004582 ORTHO05D005507 1.1e-49 199.9 110 80.9
Gorai.012G136700 Gossypium raimondii HOM05D004582 ORTHO05D005507 1.1e-49 199.9 110 80.9
unitig_749.g13837 Utricularia gibba HOM05D004582 ORTHO05D005507 1.1e-49 199.9 111 76.6
SEGI_05202 Sequoiadendron giganteum HOM05D004582 ORTHO05D005507 1.8e-49 199.1 114 72.8
THA.LOC104819361 Tarenaya hassleriana HOM05D004582 ORTHO05D005507 1.8e-49 199.1 110 80.0
vmacro00989 Vaccinium macrocarpon HOM05D004582 ORTHO05D005507 1.8e-49 199.1 110 80.0
CiPaw.06G093300 Carya illinoinensis HOM05D004582 ORTHO05D005507 2.4e-49 198.7 113 77.0
ECA246G1034 Erigeron canadensis HOM05D004582 ORTHO05D005507 2.4e-49 198.7 113 77.9
VMungo0251G1823 Vigna mungo HOM05D000329 ORTHO05D002813 2.4e-49 198.7 110 80.0
Peaxi162Scf00329g00317 Petunia axillaris HOM05D004582 ORTHO05D005507 4.1e-49 198.0 110 79.1
Glyma.07G274100 Glycine max HOM05D004582 ORTHO05D005507 5.3e-49 197.6 110 78.2
HPP92_027251 Vanilla planifolia HOM05D004582 ORTHO05D005507 5.3e-49 197.6 113 77.9
Eucgr.G02614 Eucalyptus grandis HOM05D004582 ORTHO05D005507 9.0e-49 196.8 110 78.2
Lj6g0014483 Lotus japonicus HOM05D004582 ORTHO05D005507 9.0e-49 196.8 110 77.3
Phvul.001G068300 Phaseolus vulgaris HOM05D004582 ORTHO05D005507 9.0e-49 196.8 110 79.1
CDE07G1374 Ceratophyllum demersum HOM05D004582 ORTHO05D005507 1.2e-48 196.4 99 89.9
Glyma.17G000400 Glycine max HOM05D004582 ORTHO05D005507 1.2e-48 196.4 110 78.2
Lalb_Chr10g0094681 Lupinus albus HOM05D004582 ORTHO05D005507 1.2e-48 196.4 110 79.1
THA.LOC104800345 Tarenaya hassleriana HOM05D004582 ORTHO05D005507 1.2e-48 196.4 110 79.1
Phvul.003G004200 Phaseolus vulgaris HOM05D004582 ORTHO05D005507 1.5e-48 196.1 110 78.2
Atru.chr11.27 Acer truncatum HOM05D004582 ORTHO05D005507 3.4e-48 194.9 110 78.2
Hma1.2p1_1901F.1_g307030 Hydrangea macrophylla HOM05D004582 ORTHO05D005507 3.4e-48 194.9 107 80.4
Prupe.3G015100 Prunus persica HOM05D004582 ORTHO05D005507 3.4e-48 194.9 112 75.9
BcaB07g29700 Brassica carinata HOM05D004582 ORTHO05D005507 7.7e-48 193.7 110 77.3
Gohir.D13G059000 Gossypium hirsutum HOM05D004582 ORTHO05D005507 7.7e-48 193.7 110 78.2
BcaC03g18219 Brassica carinata HOM05D004582 ORTHO05D005507 1.0e-47 193.4 110 76.4
A02p42940 Brassica napus HOM05D004582 ORTHO05D005507 1.0e-47 193.4 110 76.4
C02p62880 Brassica napus HOM05D004582 ORTHO05D005507 1.0e-47 193.4 110 76.4
BraA02t09217Z Brassica rapa HOM05D004582 ORTHO05D005507 1.0e-47 193.4 110 76.4
PGR142G2001 Punica granatum HOM05D004582 ORTHO05D005507 1.0e-47 193.4 110 77.3
Gohir.A13G062900 Gossypium hirsutum HOM05D004582 ORTHO05D005507 1.3e-47 193.0 110 77.3
Carub.0008s2444 Capsella rubella HOM05D004582 ORTHO05D005507 1.7e-47 192.6 110 76.4
Ca_16312_v3 Cicer arietinum L. HOM05D004582 ORTHO05D005507 1.7e-47 192.6 110 77.3
Sp2g26760 Schrenkiella parvula HOM05D004582 ORTHO05D005507 2.2e-47 192.2 110 76.4
TWI15G0512 Tripterygium wilfordii HOM05D004582 ORTHO05D005507 2.2e-47 192.2 110 78.2
Medtr3g092730 Medicago truncatula HOM05D004582 ORTHO05D005507 2.9e-47 191.8 112 76.8
Medtr3g092770 Medicago truncatula HOM05D004582 ORTHO05D005507 2.9e-47 191.8 112 76.8
Aa31LG10G11080 Aethionema arabicum HOM05D004582 ORTHO05D005507 3.8e-47 191.4 110 76.4
Aa31LG1G18160 Aethionema arabicum HOM05D004582 ORTHO05D005507 3.8e-47 191.4 110 76.4
MD09G1278200 Malus domestica HOM05D004582 ORTHO05D005507 3.8e-47 191.4 113 74.3
Thhalv10005155m.g Eutrema salsugineum HOM05D004582 ORTHO05D005507 5.0e-47 191.0 110 75.5
MD04G1047800 Malus domestica HOM05D004582 ORTHO05D005507 5.0e-47 191.0 110 75.5
MD17G1271200 Malus domestica HOM05D004582 ORTHO05D005507 5.0e-47 191.0 110 75.5
Os07g0623400 Oryza sativa ssp. japonica HOM05D004582 ORTHO05D005507 8.5e-47 190.3 110 74.5
Psat5g071960 Pisum sativum HOM05D004582 ORTHO05D005507 8.5e-47 190.3 110 77.3
RcHm_v2.0_Chr4g0406241 Rosa chinensis HOM05D004582 ORTHO05D005507 8.5e-47 190.3 110 76.4
Aa31LG3G17960 Aethionema arabicum HOM05D004582 ORTHO05D005507 1.4e-46 189.5 110 75.5
Carub.0006s0753 Capsella rubella HOM05D004582 ORTHO05D005507 1.9e-46 189.1 110 75.5
TPR.G31176 Trifolium pratense HOM05D004582 ORTHO05D005507 1.9e-46 189.1 110 74.5
AL8G40820 Arabidopsis lyrata HOM05D004582 ORTHO05D005507 3.2e-46 188.3 110 75.5
AT5G63670 Arabidopsis thaliana HOM05D004582 ORTHO05D005507 3.2e-46 188.3 110 75.5
CARHR278210 Cardamine hirsuta HOM05D004582 ORTHO05D005507 3.2e-46 188.3 113 73.5
AUR62032890 Chenopodium quinoa HOM05D004582 ORTHO05D005507 5.5e-46 187.6 113 77.0
FvH4_4g10630 Fragaria vesca HOM05D004582 ORTHO05D005507 7.2e-46 187.2 110 75.5
FAN07G0418 Fragaria x ananassa HOM05D004582 ORTHO05D005507 7.2e-46 187.2 110 75.5
FAN12G0218 Fragaria x ananassa HOM05D004582 ORTHO05D005507 7.2e-46 187.2 110 75.5
FAN12G1626 Fragaria x ananassa HOM05D004582 ORTHO05D005507 7.2e-46 187.2 110 75.5
FAN17G0627 Fragaria x ananassa HOM05D004582 ORTHO05D005507 7.2e-46 187.2 110 75.5
AT5G08565 Arabidopsis thaliana HOM05D004582 ORTHO05D005507 9.4e-46 186.8 110 74.5
AL6G19290 Arabidopsis lyrata HOM05D004582 ORTHO05D005507 1.2e-45 186.4 110 73.6
HanXRQChr01g0026751 Helianthus annuus HOM05D004582 ORTHO05D005507 1.2e-45 186.4 115 67.8
HanXRQChr01g0026901 Helianthus annuus HOM05D004582 ORTHO05D005507 1.2e-45 186.4 115 67.8
BcaB01g05582 Brassica carinata HOM05D004582 ORTHO05D005507 1.6e-45 186.0 110 72.7
BcaB01g05655 Brassica carinata HOM05D004582 ORTHO05D005507 4.6e-45 184.5 110 71.8
A03p03980 Brassica napus HOM05D004582 ORTHO05D005507 4.6e-45 184.5 110 71.8
C03p04450 Brassica napus HOM05D004582 ORTHO05D005507 4.6e-45 184.5 110 71.8
Cfa008860 Carpinus fangiana HOM05D002331 ORTHO05D002624 2.3e-44 182.2 101 81.2
Pp3c6_2640 Physcomitrium patens HOM05D004582 ORTHO05D005507 2.3e-44 182.2 111 70.3
Atru.chr6.1863 Acer truncatum HOM05D004582 ORTHO05D005507 3.0e-44 181.8 106 79.2
ClCG05G012130 Citrullus lanatus HOM05D004582 ORTHO05D005507 3.0e-44 181.8 95 87.4
Duzib132G0727 Durio zibethinus HOM05D004582 ORTHO05D005507 3.0e-44 181.8 95 87.4
SGA_v2.0_scaffold417G51254 Striga asiatica HOM05D004582 ORTHO05D005507 3.9e-44 181.4 98 82.7
Sp6g34300 Schrenkiella parvula HOM05D004582 ORTHO05D005507 6.7e-44 180.6 110 70.9
SalBow6G4393 Salvia bowleyana HOM05D004582 ORTHO05D005507 2.0e-43 179.1 112 67.0
SalBow8G4232 Salvia bowleyana HOM05D004582 ORTHO05D005507 2.0e-43 179.1 112 67.0
Gorai.013G066800 Gossypium raimondii HOM05D004582 ORTHO05D005507 3.3e-43 178.3 146 59.6
FAN22G0072 Fragaria x ananassa HOM05D004582 ORTHO05D005507 4.3e-43 177.9 112 73.2
DCAR_026806 Daucus carota HOM05D004582 ORTHO05D005507 9.7e-43 176.8 99 80.8
COL.COLO4_33156 Corchorus olitorius HOM05D004582 ORTHO05D005507 1.3e-42 176.4 99 79.8
Atru.chr11.31 Acer truncatum HOM05D004582 ORTHO05D005507 2.2e-42 175.6 95 84.2
AagrBONN_evm.TU.Sc2ySwM_344.5487 Anthoceros agrestis HOM05D004582 ORTHO05D005507 4.8e-42 174.5 108 69.4
Dinv17660 Davidia involucrata HOM05D004582 ORTHO05D005507 1.4e-41 172.9 88 87.5
SMO358G0649 Selaginella moellendorffii HOM05D004582 ORTHO05D005507 2.0e-40 169.1 110 65.5
Ah.11g040470 Amaranthus hybridus HOM05D004582 ORTHO05D005507 1.0e-39 166.8 133 63.2
SGA_v2.0_scaffold14G06942 Striga asiatica HOM05D004582 ORTHO05D005507 1.0e-39 166.8 141 54.6
Mapoly0092s0011 Marchantia polymorpha HOM05D004582 ORTHO05D005507 5.0e-39 164.5 109 64.2
Mapoly0166s0006 Marchantia polymorpha HOM05D004582 ORTHO05D005507 3.2e-38 161.8 109 64.2
BolC2t12361H Brassica oleracea HOM05D004582 ORTHO05D005507 2.1e-37 159.1 121 62.0
EL10Ac9g23021 Beta vulgaris HOM05D004582 ORTHO05D005507 1.8e-36 156.0 79 88.6
Oeu039967.1 Olea europaea HOM05D004582 ORTHO05D005507 1.7e-34 149.4 79 84.8
ATR0772G012 Amborella trichopoda HOM05D004582 ORTHO05D005507 2.2e-34 149.1 78 83.3
Oeu002508.1 Olea europaea HOM05D004582 ORTHO05D005507 1.1e-33 146.7 78 84.6
QL03p073673 Quercus lobata HOM05D004582 ORTHO05D005507 3.1e-33 145.2 74 86.5
SEGI_39424 Sequoiadendron giganteum HOM05D004582 ORTHO05D005507 2.6e-32 142.1 78 78.2
CiPaw.05G123600 Carya illinoinensis HOM05D004582 ORTHO05D005507 3.5e-32 141.7 77 83.1
CARHR204400 Cardamine hirsuta HOM05D004582 ORTHO05D005507 3.8e-31 138.3 95 63.2
CBR_g44398 Chara braunii HOM05D004582 ORTHO05D005507 5.5e-30 134.4 92 59.8
Thhalv10015347m.g Eutrema salsugineum HOM05D004582 ORTHO05D005507 8.8e-28 127.1 74 75.7
MCO11G500 Micromonas commoda HOM05D004582 ORTHO05D005507 3.3e-27 125.2 104 48.1
Sabra10G0198500 Salix brachista HOM05D004582 ORTHO05D005507 1.7e-26 122.9 98 66.3
Sc06g0007290 Simmondsia chinensis HOM05D004582 ORTHO05D005507 1.1e-25 120.2 99 64.6
PRCOL_00005197 Prasinoderma coloniale HOM05D004582 ORTHO05D005507 5.3e-25 117.9 100 53.0
Nitab4.5_0008730g0050 Nicotiana tabacum HOM05D004582 ORTHO05D005507 1.2e-24 116.7 74 75.7
Nitab4.5_0000129g0060 Nicotiana tabacum HOM05D004582 ORTHO05D005507 6.5e-23 110.9 75 72.0
Lj5g0002326 Lotus japonicus HOM05D004582 ORTHO05D005507 2.2e-18 95.9 63 63.5
Lj5g0003678 Lotus japonicus HOM05D004582 ORTHO05D005507 2.2e-18 95.9 63 63.5
Lj5g0005298 Lotus japonicus HOM05D004582 ORTHO05D005507 2.2e-18 95.9 63 63.5
Haze_26483 Corylus avellana HOM05D004582 ORTHO05D005507 1.4e-17 93.2 101 41.6
Cre02.g116300 Chlamydomonas reinhardtii HOM05D004582 ORTHO05D005507 1.6e-16 89.7 93 43.0
BcaB01g05656 Brassica carinata HOM05D000467 ORTHO05D000379 2.2e-15 85.9 56 67.9
MD07G1114100 Malus domestica HOM05D004582 ORTHO05D005507 1.5e-14 83.2 57 63.2
Haze_11883 Corylus avellana HOM05D004582 ORTHO05D005507 1.6e-13 79.7 76 56.6
Lsat_1_v5_gn_1_108420 Lactuca sativa HOM05D004582 ORTHO05D005507 8.0e-13 77.4 51 72.5
Rhsim12G0090000 Rhododendron simsii HOM05D004582 ORTHO05D005507 8.0e-13 77.4 147 33.3
Nitab4.5_0011163g0030 Nicotiana tabacum HOM05D004582 ORTHO05D005507 2.4e-09 65.9 74 50.0
Cfa023443 Carpinus fangiana HOM05D004582 ORTHO05D123741 9.1e-09 63.9 83 31.3
Cpa.g.sc887.1 Carica papaya HOM05D004582 ORTHO05D005507 1.2e-08 63.5 36 69.4


User provided reference genes

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