Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO675G7532 Papaver somniferum HOM05D005873 ORTHO05D007582 0.0e+00 1451.4 719 100.0
PSO541G6035 Papaver somniferum HOM05D005873 ORTHO05D007582 0.0e+00 1429.8 719 98.3
TAR627G0247 Trochodendron aralioides HOM05D005873 ORTHO05D007582 0.0e+00 1122.8 718 78.4
Nn1g04384 Nelumbo nucifera HOM05D005873 ORTHO05D007582 0.0e+00 1114.8 706 77.9
Aqoxy4G00415 Aquilegia oxysepala HOM05D005873 ORTHO05D007582 0.0e+00 1108.6 715 76.9
Dinv04615 Davidia involucrata HOM05D005873 ORTHO05D007582 0.0e+00 1098.6 709 77.0
Prupe.4G060100 Prunus persica HOM05D005873 ORTHO05D007582 0.0e+00 1092.0 715 75.7
Nn1g09089 Nelumbo nucifera HOM05D005873 ORTHO05D007582 0.0e+00 1090.1 716 75.8
GSVIVG01021202001 Vitis vinifera HOM05D005873 ORTHO05D007582 0.0e+00 1080.5 707 76.2
MD10G1281000 Malus domestica HOM05D005873 ORTHO05D007582 4.9e-312 1074.3 719 74.7
Thecc.06G172000 Theobroma cacao HOM05D005873 ORTHO05D007582 2.0e-311 1072.0 717 74.8
CiPaw.10G058200 Carya illinoinensis HOM05D005873 ORTHO05D007582 2.5e-311 1071.6 707 74.4
CSS0049485 Camellia sinensis var. sinensis HOM05D005873 ORTHO05D007582 1.3e-310 1069.3 706 75.6
TWI38G0673 Tripterygium wilfordii HOM05D005873 ORTHO05D007582 4.1e-309 1064.3 716 74.2
COL.COLO4_05490 Corchorus olitorius HOM05D005873 ORTHO05D007582 2.0e-308 1062.0 719 73.3
CSS0045323 Camellia sinensis var. sinensis HOM05D005873 ORTHO05D007582 4.5e-308 1060.8 706 75.2
MD05G1302300 Malus domestica HOM05D005873 ORTHO05D007582 2.3e-307 1058.5 718 73.1
CANSAT35G0525 Cannabis sativa HOM05D005873 ORTHO05D007582 8.6e-307 1056.6 707 74.4
Ciclev10014429m.g Citrus clementina HOM05D005873 ORTHO05D007582 4.3e-306 1054.3 715 73.8
Duzib192G0329 Durio zibethinus HOM05D005873 ORTHO05D007582 5.6e-306 1053.9 717 74.3
RcHm_v2.0_Chr5g0010641 Rosa chinensis HOM05D005873 ORTHO05D007582 6.1e-305 1050.4 716 73.2
Gorai.009G163500 Gossypium raimondii HOM05D005873 ORTHO05D007582 1.5e-303 1045.8 717 73.2
FAN11G2228 Fragaria x ananassa HOM05D005873 ORTHO05D007582 4.4e-303 1044.3 716 72.6
FAN21G0636 Fragaria x ananassa HOM05D005873 ORTHO05D007582 5.8e-303 1043.9 716 72.2
TWI63G0032 Tripterygium wilfordii HOM05D005873 ORTHO05D007582 7.5e-303 1043.5 709 73.3
Cfa000601 Carpinus fangiana HOM05D005873 ORTHO05D007582 1.3e-302 1042.7 700 73.6
FvH4_3g07910 Fragaria vesca HOM05D005873 ORTHO05D007582 1.7e-302 1042.3 716 72.3
Gohir.D05G158500 Gossypium hirsutum HOM05D005873 ORTHO05D007582 2.9e-302 1041.6 717 73.1
Gohir.A05G155800 Gossypium hirsutum HOM05D005873 ORTHO05D007582 3.7e-302 1041.2 717 73.1
Eucgr.B01514 Eucalyptus grandis HOM05D005873 ORTHO05D007582 1.1e-301 1039.6 715 71.7
Rhsim13G0191000 Rhododendron simsii HOM05D005873 ORTHO05D007582 2.4e-301 1038.5 724 71.5
FAN16G2124 Fragaria x ananassa HOM05D005873 ORTHO05D007582 2.7e-300 1035.0 713 72.1
DCAR_028009 Daucus carota HOM05D005873 ORTHO05D007582 3.9e-299 1031.2 704 72.4
MBI06_g25992_MAGBIO Magnolia biondii HOM05D005873 ORTHO05D007582 5.0e-299 1030.8 722 71.9
PGSC0003DMG400019634 Solanum tuberosum HOM05D005873 ORTHO05D007582 6.6e-299 1030.4 704 72.2
Solyc11g068930.3 Solanum lycopersicum HOM05D005873 ORTHO05D007582 8.6e-299 1030.0 704 71.9
Peaxi162Scf00010g03612 Petunia axillaris HOM05D005873 ORTHO05D007582 2.5e-298 1028.5 702 71.7
Lj1C1193T7 Lonicera japonica HOM05D005873 ORTHO05D007582 4.7e-297 1024.2 702 72.2
PGR004G0809 Punica granatum HOM05D005873 ORTHO05D007582 6.2e-297 1023.8 716 72.1
TPR.G8345 Trifolium pratense HOM05D005873 ORTHO05D007582 6.2e-297 1023.8 716 70.5
Sopen11g027640 Solanum pennellii HOM05D005873 ORTHO05D007582 2.3e-296 1021.9 704 71.6
CAN.G689.28 Capsicum annuum HOM05D005873 ORTHO05D007582 3.1e-296 1021.5 709 71.4
Oeu039925.1 Olea europaea HOM05D005873 ORTHO05D007582 6.8e-296 1020.4 702 72.4
SalBow8G4573 Salvia bowleyana HOM05D005873 ORTHO05D007582 1.5e-295 1019.2 706 71.4
Sed0012124 Sechium edule HOM05D005873 ORTHO05D007582 2.0e-295 1018.8 706 72.2
QL05p046535 Quercus lobata HOM05D005873 ORTHO05D007582 5.8e-295 1017.3 797 66.1
Ca_21328_v3 Cicer arietinum L. HOM05D005873 ORTHO05D007582 9.8e-295 1016.5 714 70.9
Lj3g0011702 Lotus japonicus HOM05D005873 ORTHO05D007582 1.3e-294 1016.1 714 70.7
ECA236G1606 Erigeron canadensis HOM05D005873 ORTHO05D007582 8.3e-294 1013.4 716 69.6
Migut.M01045 Erythranthe guttata HOM05D005873 ORTHO05D007582 1.4e-293 1012.7 705 70.5
arahy.Tifrunner.gnm1.ann1.IZWY79 Arachis hypogaea HOM05D005873 ORTHO05D007582 3.2e-293 1011.5 712 70.6
Lsat_1_v5_gn_7_23000 Lactuca sativa HOM05D005873 ORTHO05D007582 4.1e-293 1011.1 717 70.3
Lalb_Chr03g0024111 Lupinus albus HOM05D005873 ORTHO05D007582 9.2e-293 1010.0 703 70.4
ClCG01G023710 Citrullus lanatus HOM05D005873 ORTHO05D007582 1.0e-291 1006.5 707 71.7
MSTRG.16147 Avicennia marina HOM05D005873 ORTHO05D007582 3.0e-291 1005.0 716 69.1
MELO3C007214.2 Cucumis melo HOM05D005873 ORTHO05D007582 2.1e-289 998.8 740 69.2
Glyma.12G010000 Glycine max HOM05D005873 ORTHO05D007582 2.1e-289 998.8 705 71.1
Phvul.011G010700 Phaseolus vulgaris HOM05D005873 ORTHO05D007582 2.8e-289 998.4 706 71.0
VMungo1127G0781 Vigna mungo HOM05D005873 ORTHO05D007582 2.8e-289 998.4 706 71.1
Medtr0003s0540 Medicago truncatula HOM05D005873 ORTHO05D007582 1.1e-288 996.5 706 70.0
Sabra04G0036300 Salix brachista HOM05D005873 ORTHO05D007582 2.0e-287 992.3 713 69.8
FAN25G0256 Fragaria x ananassa HOM05D005873 ORTHO05D007582 1.7e-286 989.2 731 68.3
CARHR176060 Cardamine hirsuta HOM05D005873 ORTHO05D007582 3.7e-286 988.0 717 68.3
Nitab4.5_0003937g0030 Nicotiana tabacum HOM05D005873 ORTHO05D007582 4.9e-286 987.6 724 69.1
Potri.004G055600 Populus trichocarpa HOM05D005873 ORTHO05D007582 1.4e-285 986.1 714 69.0
CsaV3_6G050860 Cucumis sativus L. HOM05D005873 ORTHO05D007582 3.2e-285 984.9 707 70.3
arahy.Tifrunner.gnm1.ann1.6H0VZY Arachis hypogaea HOM05D005873 ORTHO05D007582 7.1e-285 983.8 702 69.9
AL8G12650 Arabidopsis lyrata HOM05D005873 ORTHO05D007582 1.6e-284 982.6 714 67.9
Thhalv10000804m.g Eutrema salsugineum HOM05D005873 ORTHO05D007582 4.6e-284 981.1 717 67.9
HanXRQChr05g0156521 Helianthus annuus HOM05D005873 ORTHO05D007582 4.6e-284 981.1 709 67.6
ATR0733G019 Amborella trichopoda HOM05D005873 ORTHO05D007582 1.7e-283 979.2 711 68.2
HanXRQChr13g0397371 Helianthus annuus HOM05D005873 ORTHO05D007582 5.1e-283 977.6 706 68.4
C02p46710 Brassica napus HOM05D005873 ORTHO05D007582 6.6e-283 977.2 716 67.9
A02p29440 Brassica napus HOM05D005873 ORTHO05D007582 1.1e-282 976.5 719 67.9
BraA02t07971Z Brassica rapa HOM05D005873 ORTHO05D007582 1.9e-282 975.7 719 67.7
Aa31LG9G7130 Aethionema arabicum HOM05D005873 ORTHO05D007582 3.3e-282 974.9 716 66.8
Sp2g10820 Schrenkiella parvula HOM05D005873 ORTHO05D007582 1.6e-281 972.6 715 67.3
Nitab4.5_0000158g0030 Nicotiana tabacum HOM05D005873 ORTHO05D007582 2.8e-281 971.8 665 72.3
AT5G45900 Arabidopsis thaliana HOM05D005873 ORTHO05D007582 4.0e-280 968.0 714 67.1
BolC2t10723H Brassica oleracea HOM05D005873 ORTHO05D007582 6.8e-280 967.2 708 67.9
THA.LOC104806153 Tarenaya hassleriana HOM05D005873 ORTHO05D007582 2.0e-279 965.7 719 66.1
BcaC03g16799 Brassica carinata HOM05D005873 ORTHO05D007582 2.1e-276 955.7 708 67.7
AUR62036593 Chenopodium quinoa HOM05D005873 ORTHO05D007582 7.8e-276 953.7 701 67.5
EL10Ac8g20512 Beta vulgaris HOM05D005873 ORTHO05D007582 1.9e-266 922.5 788 59.9
Ah.14g087180 Amaranthus hybridus HOM05D005873 ORTHO05D007582 2.4e-261 905.6 706 64.4
Cc11_g13830 Coffea canephora HOM05D005873 ORTHO05D007582 3.2e-261 905.2 709 64.7
Atru.chr10.1680 Acer truncatum HOM05D005873 ORTHO05D007582 5.4e-261 904.4 589 75.9
Hund21181 Selenicereus undatus HOM05D005873 ORTHO05D007582 7.9e-260 900.6 771 60.8
SEGI_08778 Sequoiadendron giganteum HOM05D005873 ORTHO05D007582 9.6e-258 893.6 726 62.4
Psat7g197320 Pisum sativum HOM05D005873 ORTHO05D007582 2.6e-255 885.6 709 64.6
vmacro01547 Vaccinium macrocarpon HOM05D005873 ORTHO05D007582 4.5e-255 884.8 708 64.5
Carub.0008s0205 Capsella rubella HOM05D005873 ORTHO05D007582 2.9e-254 882.1 692 64.2
AUR62031177 Chenopodium quinoa HOM05D005873 ORTHO05D007582 4.2e-253 878.2 721 62.3
Dinv40666 Davidia involucrata HOM05D005873 ORTHO05D007582 3.5e-252 875.2 572 76.4
Sc17g0005780 Simmondsia chinensis HOM05D005873 ORTHO05D007582 1.2e-244 850.1 611 70.0
SGA_v2.0_scaffold1G00037 Striga asiatica HOM05D005873 ORTHO05D007582 4.1e-232 808.5 705 60.3
Manes.17G054900 Manihot esculenta HOM05D005873 ORTHO05D007582 6.1e-228 794.7 550 72.0
Cpa.g.sc7.54 Carica papaya HOM05D005873 ORTHO05D007582 1.7e-222 776.5 515 74.4
AagrBONN_evm.TU.Sc2ySwM_117.2340 Anthoceros agrestis HOM05D005873 ORTHO05D007582 5.3e-216 755.0 709 53.3
Pp3c24_8100 Physcomitrium patens HOM05D005873 ORTHO05D007582 2.8e-209 732.6 700 53.0
CSS0029481 Camellia sinensis var. sinensis HOM05D005873 ORTHO05D007582 2.3e-198 696.4 737 54.1
SMO367G0884 Selaginella moellendorffii HOM05D005873 ORTHO05D007582 1.5e-189 667.2 707 48.8
CBR_g39927 Chara braunii HOM05D005873 ORTHO05D007582 6.8e-187 658.3 882 41.7
Os01g0614900 Oryza sativa ssp. japonica HOM05D005873 ORTHO05D007582 1.3e-177 627.5 701 49.6
CBR_g50802 Chara braunii HOM05D005873 ORTHO05D007582 4.9e-177 625.5 845 42.1
Eucgr.B01507 Eucalyptus grandis HOM05D005873 ORTHO05D007582 1.3e-174 617.5 456 67.5
Mapoly0015s0071 Marchantia polymorpha HOM05D005873 ORTHO05D007582 1.9e-165 587.0 505 58.4
Haze_06243 Corylus avellana HOM05D005873 ORTHO05D007582 2.4e-155 553.5 399 69.4
PRCOL_00005698 Prasinoderma coloniale HOM05D005873 ORTHO05D007582 3.6e-148 529.6 750 41.5
MCO13G516 Micromonas commoda HOM05D005873 ORTHO05D007582 1.4e-147 527.7 760 41.8
Haze_26854 Corylus avellana HOM05D005873 ORTHO05D007582 1.3e-134 484.6 730 39.5
Cfa025052 Carpinus fangiana HOM05D005873 ORTHO05D007582 3.7e-132 476.5 753 40.0
Cre03.g165215 Chlamydomonas reinhardtii HOM05D005873 ORTHO05D007582 2.0e-130 470.7 811 36.6
Zm00001eb358160 Zea mays HOM05D005873 ORTHO05D007582 2.2e-116 424.1 353 61.8
Actinidia16800 Actinidia chinensis HOM05D005873 ORTHO05D007582 2.8e-116 423.7 328 67.1
CDE08G0418 Ceratophyllum demersum HOM05D005873 ORTHO05D007582 3.7e-116 423.3 299 72.6
SHI28554 Sapria himalayana HOM05D005873 ORTHO05D007582 8.0e-79 299.3 308 51.3
CDE08G0836 Ceratophyllum demersum HOM05D005873 ORTHO05D007582 1.4e-75 288.5 215 66.0
unitig_0.g713 Utricularia gibba HOM05D005873 ORTHO05D007582 1.1e-64 252.3 190 64.7
CDE02G2814 Ceratophyllum demersum HOM05D005873 ORTHO05D007582 3.0e-57 227.6 178 63.5
TPR.G23454 Trifolium pratense HOM05D001972 ORTHO05D002555 7.6e-53 213.0 149 69.1
SHI28555 Sapria himalayana HOM05D005873 ORTHO05D007582 7.3e-40 169.9 102 81.4
Haze_06244 Corylus avellana HOM05D005873 ORTHO05D007582 9.3e-35 152.9 106 70.8
Psat0s133g0080 Pisum sativum HOM05D005873 ORTHO05D007582 3.9e-33 147.5 191 49.7
SHI28562 Sapria himalayana HOM05D005873 ORTHO05D007582 3.1e-30 137.9 117 58.1
Potri.011G065402 Populus trichocarpa HOM05D005873 ORTHO05D007582 7.6e-29 133.3 106 67.9
SHI28558 Sapria himalayana HOM05D005873 ORTHO05D050808 2.1e-26 125.2 104 58.7
Sabra11G0047200 Salix brachista HOM05D005873 ORTHO05D007582 4.8e-23 114.0 61 83.6
Lsat_1_v5_gn_1_96960 Lactuca sativa HOM05D001670 ORTHO05D002980 5.8e-21 107.1 148 42.6
Lsat_1_v5_gn_9_10320 Lactuca sativa HOM05D001670 ORTHO05D002980 1.3e-17 95.9 92 52.2
Lsat_1_v5_gn_4_5981 Lactuca sativa HOM05D005873 ORTHO05D002980 5.3e-14 84.0 57 68.4
Cpa.g.c47463 Carica papaya HOM05D005873 ORTHO05D007582 1.0e-09 69.7 37 83.8
Oeu041773.1 Olea europaea HOM05D005873 ORTHO05D042378 1.8e-09 68.9 64 51.6
A06p46270 Brassica napus HOM05D005873 ORTHO05D042378 6.7e-09 67.0 70 47.1
RcHm_v2.0_Chr2g0132441 Rosa chinensis HOM05D005873 ORTHO05D007582 1.8e-06 58.9 59 54.2


User provided reference genes

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