Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO675G2392 Papaver somniferum HOM05D007131 ORTHO05D009026 4.5e-112 407.9 204 100.0
PSO017G7069 Papaver somniferum HOM05D007131 ORTHO05D009026 4.0e-108 394.8 205 97.1
TAR362G0782 Trochodendron aralioides HOM05D007131 ORTHO05D009026 4.0e-68 261.9 201 65.7
Cfa010368 Carpinus fangiana HOM05D007131 ORTHO05D009026 1.1e-65 253.8 206 61.7
Aqoxy2G04077 Aquilegia oxysepala HOM05D007131 ORTHO05D009026 1.3e-63 246.9 194 66.5
Haze_03320 Corylus avellana HOM05D007131 ORTHO05D009026 3.0e-63 245.7 220 58.2
Prupe.8G193200 Prunus persica HOM05D007131 ORTHO05D009026 4.3e-62 241.9 203 61.6
RcHm_v2.0_Chr6g0283441 Rosa chinensis HOM05D007131 ORTHO05D009026 5.6e-62 241.5 203 61.6
FvH4_2g18050 Fragaria vesca HOM05D007131 ORTHO05D009026 2.8e-61 239.2 201 58.2
MD10G1154300 Malus domestica HOM05D007131 ORTHO05D009026 4.8e-61 238.4 203 60.1
Dinv22999 Davidia involucrata HOM05D007131 ORTHO05D009026 6.2e-61 238.0 197 61.4
Eucgr.H00746 Eucalyptus grandis HOM05D007131 ORTHO05D009026 6.2e-61 238.0 209 56.0
CiPaw.14G041500 Carya illinoinensis HOM05D007131 ORTHO05D009026 1.8e-60 236.5 207 57.5
Duzib138G1926 Durio zibethinus HOM05D007131 ORTHO05D009026 4.0e-60 235.3 207 58.5
FAN15G1265 Fragaria x ananassa HOM05D007131 ORTHO05D009026 6.9e-60 234.6 208 56.7
MD05G1165000 Malus domestica HOM05D007131 ORTHO05D009026 1.5e-59 233.4 203 59.6
Rhsim01G0249500 Rhododendron simsii HOM05D007131 ORTHO05D009026 3.4e-59 232.3 210 56.7
QL09p048363 Quercus lobata HOM05D007131 ORTHO05D009026 5.8e-59 231.5 200 58.5
Actinidia09448 Actinidia chinensis HOM05D007131 ORTHO05D009026 1.7e-58 229.9 203 56.7
Actinidia23782 Actinidia chinensis HOM05D007131 ORTHO05D009026 2.9e-58 229.2 202 56.4
Carub.0008s0817 Capsella rubella HOM05D007131 ORTHO05D009026 2.9e-58 229.2 195 59.0
Thecc.01G214300 Theobroma cacao HOM05D007131 ORTHO05D009026 2.9e-58 229.2 207 58.0
arahy.Tifrunner.gnm1.ann1.4977NQ Arachis hypogaea HOM05D007131 ORTHO05D009026 8.4e-58 227.6 191 58.1
Hma1.2p1_1492F.1_g286770 Hydrangea macrophylla HOM05D007131 ORTHO05D009026 8.4e-58 227.6 196 58.7
Nitab4.5_0000040g0390 Nicotiana tabacum HOM05D007131 ORTHO05D009026 8.4e-58 227.6 201 57.7
AL8G21510 Arabidopsis lyrata HOM05D007131 ORTHO05D009026 1.4e-57 226.9 194 58.2
EL10Ac7g17974 Beta vulgaris HOM05D007131 ORTHO05D009026 1.4e-57 226.9 201 57.2
BcaC04g23770 Brassica carinata HOM05D007131 ORTHO05D009026 1.9e-57 226.5 192 58.9
C09p04870 Brassica napus HOM05D007131 ORTHO05D009026 1.9e-57 226.5 192 58.9
Duzib211G0587 Durio zibethinus HOM05D007131 ORTHO05D009026 2.4e-57 226.1 207 56.5
PGSC0003DMG400020651 Solanum tuberosum HOM05D007131 ORTHO05D009026 4.2e-57 225.3 197 60.4
MELO3C015773.2 Cucumis melo HOM05D007131 ORTHO05D009026 9.3e-57 224.2 203 57.6
BcaB04g19580 Brassica carinata HOM05D007131 ORTHO05D009026 1.2e-56 223.8 192 59.4
Nitab4.5_0001471g0060 Nicotiana tabacum HOM05D007131 ORTHO05D009026 1.6e-56 223.4 204 56.9
BolC7t44444H Brassica oleracea HOM05D007131 ORTHO05D009026 2.1e-56 223.0 192 59.4
Ciclev10032761m.g Citrus clementina HOM05D007131 ORTHO05D009026 2.1e-56 223.0 197 57.9
ClCG09G007600 Citrullus lanatus HOM05D007131 ORTHO05D009026 4.6e-56 221.9 203 57.6
CsaV3_7G027510 Cucumis sativus L. HOM05D007131 ORTHO05D009026 4.6e-56 221.9 194 58.8
C07p39240 Brassica napus HOM05D007131 ORTHO05D009026 6.0e-56 221.5 192 58.3
Potri.002G248800 Populus trichocarpa HOM05D007131 ORTHO05D009026 6.0e-56 221.5 193 58.0
vmacro14706 Vaccinium macrocarpon HOM05D007131 ORTHO05D009026 1.8e-55 219.9 217 52.5
A06p39100 Brassica napus HOM05D007131 ORTHO05D009026 2.3e-55 219.5 192 58.3
Medtr7g053220 Medicago truncatula HOM05D007131 ORTHO05D009026 3.0e-55 219.2 198 56.1
Sabra02G0189500 Salix brachista HOM05D007131 ORTHO05D009026 3.0e-55 219.2 200 55.0
Gohir.A11G141300 Gossypium hirsutum HOM05D007131 ORTHO05D009026 5.1e-55 218.4 203 55.7
Gorai.007G158200 Gossypium raimondii HOM05D007131 ORTHO05D009026 5.1e-55 218.4 207 54.6
SGA_v2.0_scaffold77G25283 Striga asiatica HOM05D007131 ORTHO05D009026 5.1e-55 218.4 202 55.9
ATR1149G002 Amborella trichopoda HOM05D007131 ORTHO05D009026 6.7e-55 218.0 194 57.2
A09p04560 Brassica napus HOM05D007131 ORTHO05D009026 6.7e-55 218.0 205 55.1
Sp2g18910 Schrenkiella parvula HOM05D007131 ORTHO05D009026 6.7e-55 218.0 192 57.3
BraA09t36091Z Brassica rapa HOM05D007131 ORTHO05D009026 8.7e-55 217.6 205 55.1
Lalb_Chr13g0291041 Lupinus albus HOM05D007131 ORTHO05D009026 8.7e-55 217.6 202 54.0
BolC9t53415H Brassica oleracea HOM05D007131 ORTHO05D009026 1.1e-54 217.2 205 55.1
CANSAT01G0405 Cannabis sativa HOM05D007131 ORTHO05D009026 1.1e-54 217.2 198 57.6
Migut.N00650 Erythranthe guttata HOM05D007131 ORTHO05D009026 1.1e-54 217.2 203 54.7
BcaC06g30783 Brassica carinata HOM05D007131 ORTHO05D009026 1.9e-54 216.5 192 56.8
DCAR_004756 Daucus carota HOM05D007131 ORTHO05D009026 7.4e-54 214.5 189 54.5
MSTRG.12759 Avicennia marina HOM05D007131 ORTHO05D009026 1.3e-53 213.8 197 53.8
HPP92_007612 Vanilla planifolia HOM05D007131 ORTHO05D009026 1.6e-53 213.4 199 54.3
THA.LOC104802654 Tarenaya hassleriana HOM05D007131 ORTHO05D009026 2.8e-53 212.6 197 56.3
THA.LOC104818990 Tarenaya hassleriana HOM05D007131 ORTHO05D009026 2.8e-53 212.6 198 55.1
Peaxi162Scf01069g00214 Petunia axillaris HOM05D007131 ORTHO05D009026 3.7e-53 212.2 198 57.6
Solyc06g007590.3 Solanum lycopersicum HOM05D007131 ORTHO05D009026 4.8e-53 211.8 197 57.4
Lsat_1_v5_gn_9_17941 Lactuca sativa HOM05D007131 ORTHO05D009026 1.1e-52 210.7 186 55.4
Sed0006902 Sechium edule HOM05D007131 ORTHO05D009026 1.1e-52 210.7 203 54.7
Glyma.08G345600 Glycine max HOM05D007131 ORTHO05D009026 1.8e-52 209.9 211 52.6
HanXRQChr08g0231751 Helianthus annuus HOM05D007131 ORTHO05D009026 3.1e-52 209.1 190 56.8
ECA247G2839 Erigeron canadensis HOM05D004243 ORTHO05D005018 4.0e-52 208.8 200 53.5
CAN.G181.37 Capsicum annuum HOM05D007131 ORTHO05D009026 5.3e-52 208.4 197 55.8
TPR.G26850 Trifolium pratense HOM05D007131 ORTHO05D009026 1.5e-51 206.8 202 54.0
Sc24g0003400 Simmondsia chinensis HOM05D007131 ORTHO05D009026 2.6e-51 206.1 196 54.6
Lj1g0012821 Lotus japonicus HOM05D007131 ORTHO05D009026 4.5e-51 205.3 211 52.1
Psat3g150760 Pisum sativum HOM05D007131 ORTHO05D009026 1.3e-50 203.8 200 53.5
unitig_37.g12881 Utricularia gibba HOM05D007131 ORTHO05D009026 8.4e-50 201.1 200 50.5
Atru.chr6.1589 Acer truncatum HOM05D007131 ORTHO05D009026 1.9e-49 199.9 195 54.9
Dinv28824 Davidia involucrata HOM05D007131 ORTHO05D009026 2.5e-49 199.5 145 66.2
TWI36G0143 Tripterygium wilfordii HOM05D007131 ORTHO05D009026 2.7e-48 196.1 174 58.0
Aa31sc517G10 Aethionema arabicum HOM05D007131 ORTHO05D009026 3.5e-48 195.7 244 46.3
Nn1g09828 Nelumbo nucifera HOM05D007131 ORTHO05D009026 3.9e-47 192.2 140 65.0
Oeu064654.1 Olea europaea HOM05D007131 ORTHO05D009026 3.9e-47 192.2 191 52.4
Os12g0233300 Oryza sativa ssp. japonica HOM05D007131 ORTHO05D009026 5.1e-47 191.8 208 46.6
Manes.12G051500 Manihot esculenta HOM05D007131 ORTHO05D009026 1.3e-45 187.2 148 64.2
CDE08G0780 Ceratophyllum demersum HOM05D007131 ORTHO05D009026 1.6e-45 186.8 169 56.2
Cc01_g16360 Coffea canephora HOM05D007131 ORTHO05D009026 3.7e-45 185.7 144 61.8
FAN24G0325 Fragaria x ananassa HOM05D007131 ORTHO05D009026 4.1e-44 182.2 227 45.4
FAN27G0491 Fragaria x ananassa HOM05D007131 ORTHO05D009026 1.2e-43 180.6 226 45.6
AT5G48545 Arabidopsis thaliana HOM05D007131 ORTHO05D009026 2.2e-42 176.4 150 60.7
SMO201G0137 Selaginella moellendorffii HOM05D007131 ORTHO05D009026 8.5e-42 174.5 117 63.2
Pp3c1_40870 Physcomitrium patens HOM05D007131 ORTHO05D009026 1.1e-41 174.1 184 45.7
AagrBONN_evm.TU.Sc2ySwM_368.401 Anthoceros agrestis HOM05D007131 ORTHO05D009026 4.2e-41 172.2 139 54.7
VMungo1383G1151 Vigna mungo HOM05D007131 ORTHO05D009026 1.6e-40 170.2 206 46.1
Gohir.D11G147600 Gossypium hirsutum HOM05D007131 ORTHO05D009026 1.8e-39 166.8 152 57.9
CBR_g41484 Chara braunii HOM05D007131 ORTHO05D009026 3.4e-35 152.5 149 49.7
CBR_g28074 Chara braunii HOM05D007131 ORTHO05D009026 5.9e-35 151.8 155 47.7
Sopen06g002490 Solanum pennellii HOM05D007131 ORTHO05D009026 5.0e-34 148.7 112 67.9
AUR62022148 Chenopodium quinoa HOM05D007131 ORTHO05D009026 2.5e-33 146.4 267 36.7
SalBow3G2460 Salvia bowleyana HOM05D007131 ORTHO05D009026 5.5e-33 145.2 284 35.2
Thhalv10005043m.g Eutrema salsugineum HOM05D007131 ORTHO05D009026 5.1e-31 138.7 129 53.5
Phvul.008G134700 Phaseolus vulgaris HOM05D007131 ORTHO05D009026 6.7e-31 138.3 127 55.9
arahy.Tifrunner.gnm1.ann1.YI3R6M Arachis hypogaea HOM05D007131 ORTHO05D009026 6.9e-28 128.3 161 44.1
GSVIVG01002500001 Vitis vinifera HOM05D007131 ORTHO05D009026 1.2e-27 127.5 93 67.7
CARHR183470 Cardamine hirsuta HOM05D007131 ORTHO05D009026 5.0e-26 122.1 110 55.5
Lj2A1119T34 Lonicera japonica HOM05D007131 ORTHO05D009026 5.2e-23 112.1 113 53.1
AUR62001177 Chenopodium quinoa HOM05D007131 ORTHO05D009026 1.8e-20 103.6 200 37.5
CiPaw.14G045900 Carya illinoinensis HOM05D007131 ORTHO05D009026 1.7e-18 97.1 80 61.2
MCO06G116 Micromonas commoda HOM05D007131 ORTHO05D009026 1.7e-18 97.1 143 34.3
SEGI_25619 Sequoiadendron giganteum HOM05D007131 ORTHO05D009026 2.9e-18 96.3 85 58.8
QL09p048378 Quercus lobata HOM05D007131 ORTHO05D009026 9.4e-17 91.3 74 58.1
Cpa.g.sc8.95 Carica papaya HOM05D007131 ORTHO05D009026 5.2e-15 85.5 88 47.7
QL09p048788 Quercus lobata HOM05D002652 ORTHO05D002739 1.4e-12 77.4 120 37.5
Os11g0295000 Oryza sativa ssp. japonica HOM05D007131 ORTHO05D009026 1.7e-10 70.5 77 46.8
Hund18476 Selenicereus undatus HOM05D007131 ORTHO05D009026 3.0e-07 59.7 128 34.4
CANSAT35G0509 Cannabis sativa HOM05D002397 ORTHO05D002667 4.0e-07 59.3 101 36.6
COL.COLO4_17651 Corchorus olitorius HOM05D002397 ORTHO05D002667 5.2e-07 58.9 101 36.6
Cre06.g273000 Chlamydomonas reinhardtii HOM05D002397 ORTHO05D002667 6.8e-07 58.5 105 36.2
HanXRQChr14g0447211 Helianthus annuus HOM05D002397 ORTHO05D002667 6.8e-07 58.5 101 35.6
THA.LOC104812704 Tarenaya hassleriana HOM05D002397 ORTHO05D002667 1.5e-06 57.4 101 34.7
Carub.0001s2956 Capsella rubella HOM05D002397 ORTHO05D002667 2.6e-06 56.6 101 34.7
Dinv25920 Davidia involucrata HOM05D002397 ORTHO05D002667 2.6e-06 56.6 106 34.0
Nn7g38244 Nelumbo nucifera HOM05D002397 ORTHO05D002667 2.6e-06 56.6 101 33.7
Thecc.02G008600 Theobroma cacao HOM05D002397 ORTHO05D002667 2.6e-06 56.6 101 34.7
ECA238G1645 Erigeron canadensis HOM05D002397 ORTHO05D002667 3.4e-06 56.2 101 34.7
Nitab4.5_0001288g0140 Nicotiana tabacum HOM05D002397 ORTHO05D002667 3.4e-06 56.2 102 34.3
AL1G49390 Arabidopsis lyrata HOM05D002397 ORTHO05D002667 4.4e-06 55.8 101 34.7
CSS0030347 Camellia sinensis var. sinensis HOM05D002397 ORTHO05D002667 4.4e-06 55.8 106 37.7
Thhalv10009998m.g Eutrema salsugineum HOM05D002397 ORTHO05D002667 4.4e-06 55.8 101 34.7
Lsat_1_v5_gn_2_62881 Lactuca sativa HOM05D002397 ORTHO05D002667 4.4e-06 55.8 106 36.8
MD05G1250300 Malus domestica HOM05D002397 ORTHO05D002667 5.7e-06 55.5 101 33.7
Lj2A349T11 Lonicera japonica HOM05D002397 ORTHO05D002667 7.5e-06 55.1 106 33.0
Haze_06076 Corylus avellana HOM05D002397 ORTHO05D002667 9.8e-06 54.7 106 36.8
Hma1.2p1_1005F.1_g246900 Hydrangea macrophylla HOM05D002397 ORTHO05D002667 9.8e-06 54.7 106 35.8
Lj4g0013442 Lotus japonicus HOM05D002397 ORTHO05D002667 9.8e-06 54.7 106 32.1
Solyc02g068700.3 Solanum lycopersicum HOM05D002397 ORTHO05D002667 9.8e-06 54.7 101 33.7
Sopen02g017870 Solanum pennellii HOM05D002397 ORTHO05D002667 9.8e-06 54.7 101 33.7
TAR629G2980 Trochodendron aralioides HOM05D002397 ORTHO05D002667 9.8e-06 54.7 101 32.7


User provided reference genes

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