Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO541G4821 Papaver somniferum HOM05D005150 ORTHO05D006070 3.6e-58 228.0 114 100.0
PSO675G4632 Papaver somniferum HOM05D005150 ORTHO05D006070 7.0e-54 213.8 114 93.9
QL08p029214 Quercus lobata HOM05D005150 ORTHO05D006070 2.3e-20 102.4 113 49.6
Medtr5g088550 Medicago truncatula HOM05D005150 ORTHO05D006070 1.1e-19 100.1 103 53.4
Phvul.006G020400 Phaseolus vulgaris HOM05D005150 ORTHO05D006070 1.1e-19 100.1 114 52.6
Glyma.13G073800 Glycine max HOM05D005150 ORTHO05D006070 2.5e-19 99.0 114 51.8
Atru.chr6.3335 Acer truncatum HOM05D005150 ORTHO05D006070 3.3e-19 98.6 125 44.8
Medtr7g058970 Medicago truncatula HOM05D005150 ORTHO05D006070 4.3e-19 98.2 116 49.1
Potri.002G222900 Populus trichocarpa HOM05D005150 ORTHO05D006070 5.6e-19 97.8 114 49.1
Lj6g0009976 Lotus japonicus HOM05D005150 ORTHO05D006070 7.3e-19 97.4 114 51.8
CAN.G584.30 Capsicum annuum HOM05D005150 ORTHO05D006070 1.3e-18 96.7 114 49.1
Rhsim06G0172300 Rhododendron simsii HOM05D005150 ORTHO05D006070 2.1e-18 95.9 115 50.4
Gohir.A07G189900 Gossypium hirsutum HOM05D005150 ORTHO05D006070 3.6e-18 95.1 115 44.3
Gohir.D07G196100 Gossypium hirsutum HOM05D005150 ORTHO05D006070 3.6e-18 95.1 115 44.3
Gorai.001G219600 Gossypium raimondii HOM05D005150 ORTHO05D006070 3.6e-18 95.1 115 44.3
TPR.G14637 Trifolium pratense HOM05D005150 ORTHO05D006070 3.6e-18 95.1 111 53.2
CiPaw.03G276700 Carya illinoinensis HOM05D005150 ORTHO05D006070 4.8e-18 94.7 116 44.8
Hma1.2p1_0133F.1_g061080 Hydrangea macrophylla HOM05D005150 ORTHO05D006070 6.2e-18 94.4 114 47.4
LjContig00564g0005952 Lotus japonicus HOM05D005150 ORTHO05D006070 1.1e-17 93.6 114 50.0
Oeu029950.1 Olea europaea HOM05D005150 ORTHO05D006070 1.4e-17 93.2 114 45.6
HanXRQChr10g0306371 Helianthus annuus HOM05D005150 ORTHO05D006070 1.8e-17 92.8 115 45.2
Nn1g03285 Nelumbo nucifera HOM05D005150 ORTHO05D006070 1.8e-17 92.8 117 47.9
Nn1g07416 Nelumbo nucifera HOM05D005150 ORTHO05D006070 1.8e-17 92.8 114 44.7
Sabra14G0124000 Salix brachista HOM05D005150 ORTHO05D006070 1.8e-17 92.8 110 48.2
arahy.Tifrunner.gnm1.ann1.CR4AH5 Arachis hypogaea HOM05D005150 ORTHO05D006070 6.9e-17 90.9 114 43.9
arahy.Tifrunner.gnm1.ann1.V5U7H6 Arachis hypogaea HOM05D005150 ORTHO05D006070 6.9e-17 90.9 114 43.9
Cfa014266 Carpinus fangiana HOM05D005150 ORTHO05D006070 6.9e-17 90.9 114 45.6
Actinidia21452 Actinidia chinensis HOM05D005150 ORTHO05D006070 2.0e-16 89.4 114 45.6
Hma1.2p1_0405F.1_g145660 Hydrangea macrophylla HOM05D005150 ORTHO05D006070 2.0e-16 89.4 115 43.5
vmacro12127 Vaccinium macrocarpon HOM05D005150 ORTHO05D006070 2.0e-16 89.4 115 46.1
VMungo0647G0767 Vigna mungo HOM05D005150 ORTHO05D006070 2.6e-16 89.0 114 49.1
DCAR_032165 Daucus carota HOM05D005150 ORTHO05D006070 3.4e-16 88.6 115 47.8
Lalb_Chr19g0125521 Lupinus albus HOM05D005150 ORTHO05D006070 3.4e-16 88.6 117 47.9
Phvul.008G205400 Phaseolus vulgaris HOM05D005150 ORTHO05D006070 3.4e-16 88.6 114 49.1
CsaV3_7G002850 Cucumis sativus L. HOM05D005150 ORTHO05D006070 5.8e-16 87.8 114 46.5
Haze_12715 Corylus avellana HOM05D005150 ORTHO05D006070 7.6e-16 87.4 114 44.7
HanXRQChr03g0075721 Helianthus annuus HOM05D005150 ORTHO05D006070 7.6e-16 87.4 116 44.8
Lsat_1_v5_gn_9_105581 Lactuca sativa HOM05D005150 ORTHO05D006070 7.6e-16 87.4 116 44.8
MELO3C018891.2 Cucumis melo HOM05D005150 ORTHO05D006070 1.3e-15 86.7 114 46.5
ECA234G4664 Erigeron canadensis HOM05D005150 ORTHO05D006070 1.7e-15 86.3 116 43.1
TPR.G12632 Trifolium pratense HOM05D005150 ORTHO05D006070 2.9e-15 85.5 101 49.5
ClCG02G002530 Citrullus lanatus HOM05D005150 ORTHO05D006070 4.9e-15 84.7 116 45.7
ClCG02G002570 Citrullus lanatus HOM05D005150 ORTHO05D006070 4.9e-15 84.7 116 45.7
Lsat_1_v5_gn_7_95641 Lactuca sativa HOM05D005150 ORTHO05D006070 6.4e-15 84.3 111 43.2
CSS0010457 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 8.4e-15 84.0 112 44.6
CSS0040672 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 8.4e-15 84.0 112 44.6
DCAR_012901 Daucus carota HOM05D005150 ORTHO05D006070 8.4e-15 84.0 114 43.9
Prupe.3G204400 Prunus persica HOM05D005150 ORTHO05D006070 8.4e-15 84.0 118 43.2
Rhsim06G0172200 Rhododendron simsii HOM05D005150 ORTHO05D006070 8.4e-15 84.0 115 46.1
ECA240G3606 Erigeron canadensis HOM05D005150 ORTHO05D006070 1.4e-14 83.2 115 42.6
MD09G1119700 Malus domestica HOM05D005150 ORTHO05D006070 1.4e-14 83.2 125 40.0
Manes.12G062667 Manihot esculenta HOM05D005150 ORTHO05D006070 1.4e-14 83.2 113 44.2
Manes.12G062700 Manihot esculenta HOM05D005150 ORTHO05D006070 1.4e-14 83.2 113 44.2
Potri.014G162400 Populus trichocarpa HOM05D005150 ORTHO05D006070 1.4e-14 83.2 110 45.5
Thecc.01G187900 Theobroma cacao HOM05D005150 ORTHO05D006070 1.4e-14 83.2 119 42.9
Cpa.g.sc136.7 Carica papaya HOM05D005150 ORTHO05D006070 3.2e-14 82.0 116 42.2
Oeu012338.1 Olea europaea HOM05D005150 ORTHO05D006070 3.2e-14 82.0 100 45.0
Lalb_Chr04g0249481 Lupinus albus HOM05D005150 ORTHO05D006070 4.2e-14 81.6 99 49.5
RcHm_v2.0_Chr2g0156971 Rosa chinensis HOM05D005150 ORTHO05D006070 9.3e-14 80.5 117 40.2
MD17G1110500 Malus domestica HOM05D005150 ORTHO05D006070 1.6e-13 79.7 125 39.2
Glyma.02G276100 Glycine max HOM05D005150 ORTHO05D006070 3.5e-13 78.6 115 41.7
Glyma.14G039800 Glycine max HOM05D005150 ORTHO05D006070 4.6e-13 78.2 114 45.6
Lsat_1_v5_gn_5_124661 Lactuca sativa HOM05D005150 ORTHO05D006070 4.6e-13 78.2 114 43.0
Duzib133G1369 Durio zibethinus HOM05D005150 ORTHO05D006070 7.9e-13 77.4 118 40.7
TAR629G0945 Trochodendron aralioides HOM05D005150 ORTHO05D006070 7.9e-13 77.4 102 43.1
Sopen07g002670 Solanum pennellii HOM05D005150 ORTHO05D006070 1.0e-12 77.0 100 49.0
FAN05G2177 Fragaria x ananassa HOM05D005150 ORTHO05D006070 1.3e-12 76.6 116 38.8
Solyc07g006590.1 Solanum lycopersicum HOM05D005150 ORTHO05D006070 1.3e-12 76.6 99 48.5
AL7G44580 Arabidopsis lyrata HOM05D005150 ORTHO05D006070 1.8e-12 76.3 114 43.0
Sed0026674 Sechium edule HOM05D005150 ORTHO05D006070 1.8e-12 76.3 109 45.9
vmacro12128 Vaccinium macrocarpon HOM05D005150 ORTHO05D006070 2.3e-12 75.9 108 45.4
FAN02G0634 Fragaria x ananassa HOM05D005150 ORTHO05D006070 3.0e-12 75.5 116 38.8
Sed0012024 Sechium edule HOM05D005150 ORTHO05D006070 3.0e-12 75.5 114 42.1
Lj1g0017552 Lotus japonicus HOM05D005150 ORTHO05D006070 3.9e-12 75.1 100 50.0
Manes.13G063792 Manihot esculenta HOM05D005150 ORTHO05D006070 8.7e-12 73.9 113 38.9
Aqoxy1G04044 Aquilegia oxysepala HOM05D005150 ORTHO05D006070 1.1e-11 73.6 114 38.6
Carub.0007s3148 Capsella rubella HOM05D005150 ORTHO05D006070 1.1e-11 73.6 119 41.2
Ciclev10017035m.g Citrus clementina HOM05D005150 ORTHO05D006070 1.1e-11 73.6 100 44.0
HanXRQChr17g0535431 Helianthus annuus HOM05D005150 ORTHO05D006070 1.1e-11 73.6 102 40.2
Oeu040478.2 Olea europaea HOM05D005150 ORTHO05D006070 1.5e-11 73.2 119 42.0
Aa31sc697G10 Aethionema arabicum HOM05D005150 ORTHO05D006070 1.9e-11 72.8 114 37.7
Eucgr.K00667 Eucalyptus grandis HOM05D005150 ORTHO05D006070 3.3e-11 72.0 100 41.0
Gorai.001G194000 Gossypium raimondii HOM05D005150 ORTHO05D006070 4.3e-11 71.6 115 39.1
Gohir.A07G176012 Gossypium hirsutum HOM05D005150 ORTHO05D006070 9.6e-11 70.5 112 37.5
FvH4_6g41440 Fragaria vesca HOM05D005150 ORTHO05D006070 1.6e-10 69.7 106 38.7
Gorai.007G167900 Gossypium raimondii HOM05D005150 ORTHO05D006070 1.6e-10 69.7 114 38.6
PGR142G3730 Punica granatum HOM05D005150 ORTHO05D006070 1.6e-10 69.7 114 39.5
TAR624G1342 Trochodendron aralioides HOM05D005150 ORTHO05D006070 1.6e-10 69.7 103 42.7
Gohir.A11G150900 Gossypium hirsutum HOM05D005150 ORTHO05D006070 2.8e-10 68.9 114 37.7
Gohir.D11G157400 Gossypium hirsutum HOM05D005150 ORTHO05D006070 3.6e-10 68.6 114 37.7
HanXRQChr04g0126761 Helianthus annuus HOM05D005150 ORTHO05D006070 3.6e-10 68.6 104 39.4
Rhsim04G0044800 Rhododendron simsii HOM05D005150 ORTHO05D006070 3.6e-10 68.6 111 38.7
Sc06g0009750 Simmondsia chinensis HOM05D005150 ORTHO05D006070 8.1e-10 67.4 110 40.9
BcaC02g09491 Brassica carinata HOM05D005150 ORTHO05D006070 1.8e-09 66.2 114 36.8
A04p09910 Brassica napus HOM05D005150 ORTHO05D006070 1.8e-09 66.2 114 36.0
BraA04t16654Z Brassica rapa HOM05D005150 ORTHO05D006070 1.8e-09 66.2 114 36.0
AUR62017541 Chenopodium quinoa HOM05D005150 ORTHO05D006070 1.8e-09 66.2 118 35.6
AUR62015079 Chenopodium quinoa HOM05D005150 ORTHO05D006070 2.4e-09 65.9 118 35.6
CARHR216910 Cardamine hirsuta HOM05D005150 ORTHO05D006070 3.1e-09 65.5 114 38.6
DCAR_021114 Daucus carota HOM05D005150 ORTHO05D006070 3.1e-09 65.5 100 44.0
AT2G04795 Arabidopsis thaliana HOM05D005150 ORTHO05D006070 5.3e-09 64.7 114 37.7
BolC4t25919H Brassica oleracea HOM05D005150 ORTHO05D006070 5.3e-09 64.7 114 36.0
COL.COLO4_25851 Corchorus olitorius HOM05D005150 ORTHO05D006070 6.9e-09 64.3 88 43.2
ECA236G2208 Erigeron canadensis HOM05D005150 ORTHO05D006070 9.0e-09 63.9 106 38.7
BcaB08g34491 Brassica carinata HOM05D005150 ORTHO05D006070 1.2e-08 63.5 114 36.0
Dinv07836 Davidia involucrata HOM05D005150 ORTHO05D006070 1.2e-08 63.5 106 42.5
C04p43410 Brassica napus HOM05D005150 ORTHO05D006070 1.5e-08 63.2 114 37.7
CSS0044074 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 1.5e-08 63.2 109 36.7
AL3G42390 Arabidopsis lyrata HOM05D005150 ORTHO05D006070 2.6e-08 62.4 114 36.0
AUR62005176 Chenopodium quinoa HOM05D005150 ORTHO05D006070 2.6e-08 62.4 114 37.7
Ah.14g082900 Amaranthus hybridus HOM05D005150 ORTHO05D006070 3.4e-08 62.0 116 37.1
CARHR102770 Cardamine hirsuta HOM05D005150 ORTHO05D006070 3.4e-08 62.0 114 36.8
THA.LOC104826613 Tarenaya hassleriana HOM05D005150 ORTHO05D006070 3.4e-08 62.0 114 36.8
A03p44460 Brassica napus HOM05D005150 ORTHO05D006070 5.8e-08 61.2 114 37.7
BraA03t13579Z Brassica rapa HOM05D005150 ORTHO05D006070 5.8e-08 61.2 114 37.7
AUR62000791 Chenopodium quinoa HOM05D005150 ORTHO05D006070 7.6e-08 60.8 114 36.8
BcaC01g06899 Brassica carinata HOM05D005150 ORTHO05D006070 9.9e-08 60.5 114 37.7
Sp3g23410 Schrenkiella parvula HOM05D005150 ORTHO05D006070 1.3e-07 60.1 114 35.1
Sp7g06500 Schrenkiella parvula HOM05D005150 ORTHO05D006070 1.7e-07 59.7 114 31.6
C03p55240 Brassica napus HOM05D005150 ORTHO05D006070 2.9e-07 58.9 114 36.8
BolC3t17797H Brassica oleracea HOM05D005150 ORTHO05D006070 2.9e-07 58.9 114 36.8
MBI16_g31702_MAGBIO Magnolia biondii HOM05D005150 ORTHO05D006070 3.8e-07 58.5 114 36.0
AT5G35732 Arabidopsis thaliana HOM05D005150 ORTHO05D006070 1.4e-06 56.6 105 36.2
Aa31sc53G30 Aethionema arabicum HOM05D005150 ORTHO05D006070 1.9e-06 56.2 102 37.3
ClCG02G009450 Citrullus lanatus HOM05D005150 ORTHO05D006070 1.9e-06 56.2 116 33.6
Ah.01g002180 Amaranthus hybridus HOM05D005150 ORTHO05D006070 2.4e-06 55.8 107 37.4
THA.LOC104808855 Tarenaya hassleriana HOM05D005150 ORTHO05D006070 5.5e-06 54.7 114 33.3


User provided reference genes

Program Settings