Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO541G1615 Papaver somniferum HOM05D004470 ORTHO05D005079 3.9e-54 214.5 108 100.0
PSO675G4687 Papaver somniferum HOM05D004470 ORTHO05D005079 5.3e-51 204.1 105 98.1
PSO339G4842 Papaver somniferum HOM05D004470 ORTHO05D005079 7.6e-42 173.7 102 86.3
PSO513G0108 Papaver somniferum HOM05D004470 ORTHO05D005079 1.0e-41 173.3 102 86.3
CANSAT56G4147 Cannabis sativa HOM05D004470 ORTHO05D005079 8.5e-33 143.7 113 68.1
Sed0027904 Sechium edule HOM05D004470 ORTHO05D005079 8.5e-33 143.7 87 82.8
TAR362G0763 Trochodendron aralioides HOM05D004470 ORTHO05D005079 1.9e-32 142.5 106 68.9
Nn3g21765 Nelumbo nucifera HOM05D004470 ORTHO05D005079 3.2e-32 141.7 114 68.4
Phvul.007G202300 Phaseolus vulgaris HOM05D004470 ORTHO05D005079 3.2e-32 141.7 97 74.2
Hma1.2p1_0052F.1_g030690 Hydrangea macrophylla HOM05D004470 ORTHO05D005079 5.5e-32 141.0 101 70.3
Sabra13G0006500 Salix brachista HOM05D004470 ORTHO05D005079 5.5e-32 141.0 99 70.7
CANSAT54G2827 Cannabis sativa HOM05D004470 ORTHO05D005079 7.2e-32 140.6 110 68.2
Lj6g0017458 Lotus japonicus HOM05D004470 ORTHO05D005079 7.2e-32 140.6 88 77.3
TWI63G0379 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 9.3e-32 140.2 94 73.4
MELO3C015252.2 Cucumis melo HOM05D004470 ORTHO05D005079 1.2e-31 139.8 107 69.2
Potri.013G007600 Populus trichocarpa HOM05D004470 ORTHO05D005079 1.2e-31 139.8 99 70.7
GSVIVG01031257001 Vitis vinifera HOM05D004470 ORTHO05D005079 1.2e-31 139.8 86 79.1
Thecc.05G324600 Theobroma cacao HOM05D004470 ORTHO05D005079 1.6e-31 139.4 88 80.7
Aqoxy2G02663 Aquilegia oxysepala HOM05D004470 ORTHO05D005079 2.7e-31 138.7 113 69.0
arahy.Tifrunner.gnm1.ann1.IGN13F Arachis hypogaea HOM05D004470 ORTHO05D005079 2.7e-31 138.7 98 70.4
Glyma.20G096000 Glycine max HOM05D004470 ORTHO05D005079 2.7e-31 138.7 88 76.1
Sopen01g044200 Solanum pennellii HOM05D004470 ORTHO05D005079 2.7e-31 138.7 112 67.0
PGSC0003DMG400002761 Solanum tuberosum HOM05D004470 ORTHO05D005079 2.7e-31 138.7 112 67.0
Peaxi162Scf00357g00829 Petunia axillaris HOM05D004470 ORTHO05D005079 3.6e-31 138.3 113 66.4
Dinv30905 Davidia involucrata HOM05D004470 ORTHO05D005079 4.6e-31 137.9 101 68.3
Nitab4.5_0001338g0040 Nicotiana tabacum HOM05D004470 ORTHO05D005079 4.6e-31 137.9 96 70.8
CsaV3_1G037920 Cucumis sativus L. HOM05D004470 ORTHO05D005079 6.1e-31 137.5 87 79.3
CAN.G1076.31 Capsicum annuum HOM05D004470 ORTHO05D005079 7.9e-31 137.1 114 69.3
COL.COLO4_05537 Corchorus olitorius HOM05D004470 ORTHO05D005079 7.9e-31 137.1 109 68.8
Glyma.10G146200 Glycine max HOM05D004470 ORTHO05D005079 7.9e-31 137.1 87 79.3
Nitab4.5_0010074g0010 Nicotiana tabacum HOM05D004470 ORTHO05D005079 7.9e-31 137.1 113 67.3
ATR0693G181 Amborella trichopoda HOM05D004470 ORTHO05D005079 1.0e-30 136.7 108 70.4
Ciclev10002908m.g Citrus clementina HOM05D004470 ORTHO05D005079 1.0e-30 136.7 89 77.5
PGR031G2302 Punica granatum HOM05D004470 ORTHO05D005079 1.4e-30 136.3 88 78.4
Gohir.A08G205100 Gossypium hirsutum HOM05D004470 ORTHO05D005079 1.8e-30 136.0 109 67.0
Gohir.D08G222200 Gossypium hirsutum HOM05D004470 ORTHO05D005079 1.8e-30 136.0 109 67.0
Gorai.004G236000 Gossypium raimondii HOM05D004470 ORTHO05D005079 1.8e-30 136.0 109 67.0
Psat1g179040 Pisum sativum HOM05D004470 ORTHO05D005079 1.8e-30 136.0 90 75.6
Sabra05G0020100 Salix brachista HOM05D004470 ORTHO05D005079 1.8e-30 136.0 87 74.7
TWI36G1558 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 1.8e-30 136.0 96 70.8
Atru.chr1.2932 Acer truncatum HOM05D004470 ORTHO05D005079 2.3e-30 135.6 110 66.4
TPR.G29395 Trifolium pratense HOM05D004470 ORTHO05D005079 2.3e-30 135.6 89 76.4
Hma1.2p1_0008F-1.1_g005470 Hydrangea macrophylla HOM05D004470 ORTHO05D005079 3.0e-30 135.2 86 77.9
Potri.005G011800 Populus trichocarpa HOM05D004470 ORTHO05D005079 3.0e-30 135.2 87 74.7
CiPaw.08G154600 Carya illinoinensis HOM05D004470 ORTHO05D005079 3.9e-30 134.8 87 78.2
Lalb_Chr02g0147721 Lupinus albus HOM05D004470 ORTHO05D005079 3.9e-30 134.8 105 66.7
arahy.Tifrunner.gnm1.ann1.3R4C35 Arachis hypogaea HOM05D004470 ORTHO05D005079 5.1e-30 134.4 87 75.9
arahy.Tifrunner.gnm1.ann1.44SN5D Arachis hypogaea HOM05D004470 ORTHO05D005079 5.1e-30 134.4 87 75.9
Manes.09G177800 Manihot esculenta HOM05D004470 ORTHO05D005079 6.7e-30 134.0 86 74.4
TWI34G1281 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 6.7e-30 134.0 86 74.4
Duzib128G0232 Durio zibethinus HOM05D004470 ORTHO05D005079 8.8e-30 133.7 88 76.1
Manes.08G110300 Manihot esculenta HOM05D004470 ORTHO05D005079 8.8e-30 133.7 108 63.0
Medtr2g023920 Medicago truncatula HOM05D004470 ORTHO05D005079 1.1e-29 133.3 120 62.5
AL6G38670 Arabidopsis lyrata HOM05D004470 ORTHO05D005079 1.5e-29 132.9 87 74.7
Sc16g0009110 Simmondsia chinensis HOM05D004470 ORTHO05D005079 1.5e-29 132.9 97 69.1
Prupe.3G062500 Prunus persica HOM05D004470 ORTHO05D005079 1.9e-29 132.5 110 63.6
TPR.G34849 Trifolium pratense HOM05D004470 ORTHO05D005079 1.9e-29 132.5 112 64.3
CDE09G1304 Ceratophyllum demersum HOM05D004470 ORTHO05D005079 2.5e-29 132.1 107 69.2
QL03p015399 Quercus lobata HOM05D004470 ORTHO05D005079 2.5e-29 132.1 87 75.9
AUR62006764 Chenopodium quinoa HOM05D004470 ORTHO05D005079 3.3e-29 131.7 89 73.0
Duzib106G0025 Durio zibethinus HOM05D004470 ORTHO05D005079 4.3e-29 131.3 88 76.1
Aa31LG5G16190 Aethionema arabicum HOM05D004470 ORTHO05D005079 7.4e-29 130.6 87 75.9
BcaB04g19711 Brassica carinata HOM05D004470 ORTHO05D005079 7.4e-29 130.6 110 63.6
CARHR186760 Cardamine hirsuta HOM05D004470 ORTHO05D005079 7.4e-29 130.6 87 74.7
CiPaw.07G030800 Carya illinoinensis HOM05D004470 ORTHO05D005079 7.4e-29 130.6 88 73.9
ClCG03G017770 Citrullus lanatus HOM05D004470 ORTHO05D005079 7.4e-29 130.6 75 85.3
Haze_04037 Corylus avellana HOM05D004470 ORTHO05D005079 7.4e-29 130.6 88 73.9
BcaNung03915 Brassica carinata HOM05D004470 ORTHO05D005079 9.7e-29 130.2 95 71.6
A06p37040 Brassica napus HOM05D004470 ORTHO05D005079 9.7e-29 130.2 95 71.6
BraA06t26628Z Brassica rapa HOM05D004470 ORTHO05D005079 9.7e-29 130.2 95 71.6
Carub.0003s0517 Capsella rubella HOM05D004470 ORTHO05D005079 9.7e-29 130.2 87 74.7
Prupe.2G047800 Prunus persica HOM05D004470 ORTHO05D005079 9.7e-29 130.2 110 61.8
BcaC04g23637 Brassica carinata HOM05D004470 ORTHO05D005079 1.3e-28 129.8 90 73.3
C09p06260 Brassica napus HOM05D004470 ORTHO05D005079 1.3e-28 129.8 90 73.3
BolC9t53546H Brassica oleracea HOM05D004470 ORTHO05D005079 1.3e-28 129.8 90 73.3
BraA09t36207Z Brassica rapa HOM05D004470 ORTHO05D005079 1.3e-28 129.8 88 73.9
BcaNung03672 Brassica carinata HOM05D004470 ORTHO05D005079 1.7e-28 129.4 90 72.2
CARHR080260 Cardamine hirsuta HOM05D004470 ORTHO05D005079 1.7e-28 129.4 87 73.6
Eucgr.A00650 Eucalyptus grandis HOM05D004470 ORTHO05D005079 1.7e-28 129.4 121 57.9
FAN05G2322 Fragaria x ananassa HOM05D004470 ORTHO05D005079 1.7e-28 129.4 87 74.7
MD10G1090000 Malus domestica HOM05D004470 ORTHO05D005079 1.7e-28 129.4 87 73.6
THA.LOC104802774 Tarenaya hassleriana HOM05D004470 ORTHO05D005079 1.7e-28 129.4 91 70.3
Thhalv10021798m.g Eutrema salsugineum HOM05D004470 ORTHO05D005079 2.2e-28 129.0 87 73.6
FAN02G2550 Fragaria x ananassa HOM05D004470 ORTHO05D005079 2.2e-28 129.0 87 74.7
FAN14G0179 Fragaria x ananassa HOM05D004470 ORTHO05D005079 2.2e-28 129.0 87 74.7
RcHm_v2.0_Chr2g0139741 Rosa chinensis HOM05D004470 ORTHO05D005079 2.2e-28 129.0 85 74.1
Sp3g04670 Schrenkiella parvula HOM05D004470 ORTHO05D005079 2.2e-28 129.0 88 73.9
AT3G05810 Arabidopsis thaliana HOM05D004470 ORTHO05D005079 2.8e-28 128.6 87 72.4
Sp2g21200 Schrenkiella parvula HOM05D004470 ORTHO05D005079 2.8e-28 128.6 110 63.6
Ah.06g196140 Amaranthus hybridus HOM05D004470 ORTHO05D005079 3.7e-28 128.3 88 72.7
FAN09G3660 Fragaria x ananassa HOM05D004470 ORTHO05D005079 4.8e-28 127.9 87 73.6
Hund07308 Selenicereus undatus HOM05D004470 ORTHO05D005079 6.3e-28 127.5 93 71.0
Ah.16g100620 Amaranthus hybridus HOM05D004470 ORTHO05D005079 8.2e-28 127.1 88 71.6
AL3G16550 Arabidopsis lyrata HOM05D004470 ORTHO05D005079 8.2e-28 127.1 87 72.4
A09p05650 Brassica napus HOM05D004470 ORTHO05D005079 8.2e-28 127.1 88 72.7
CSS0034232 Camellia sinensis var. sinensis HOM05D004470 ORTHO05D005079 8.2e-28 127.1 85 74.1
Carub.0006s2445 Capsella rubella HOM05D004470 ORTHO05D005079 8.2e-28 127.1 87 73.6
THA.LOC104821881 Tarenaya hassleriana HOM05D004470 ORTHO05D005079 8.2e-28 127.1 87 72.4
EL10Ac4g09488 Beta vulgaris HOM05D004470 ORTHO05D005079 1.1e-27 126.7 89 70.8
SGA_v2.0_scaffold37G14596 Striga asiatica HOM05D004470 ORTHO05D005079 1.1e-27 126.7 85 70.6
CDE02G2719 Ceratophyllum demersum HOM05D004470 ORTHO05D005079 1.8e-27 125.9 107 66.4
Actinidia35512 Actinidia chinensis HOM05D004470 ORTHO05D005079 3.1e-27 125.2 105 59.0
MSTRG.5145 Avicennia marina HOM05D004470 ORTHO05D005079 5.3e-27 124.4 91 64.8
Eucgr.H03299 Eucalyptus grandis HOM05D004470 ORTHO05D005079 5.3e-27 124.4 88 70.5
BolC7t44679H Brassica oleracea HOM05D004470 ORTHO05D005079 6.9e-27 124.0 90 70.0
MBI18_g35544_MAGBIO Magnolia biondii HOM05D004470 ORTHO05D005079 6.9e-27 124.0 134 53.0
Nitab4.5_0001255g0050 Nicotiana tabacum HOM05D004470 ORTHO05D005079 1.2e-26 123.2 141 54.6
Ca_10181_v3 Cicer arietinum L. HOM05D004470 ORTHO05D005079 1.5e-26 122.9 82 74.4
SalBow5G0245 Salvia bowleyana HOM05D004470 ORTHO05D005079 1.5e-26 122.9 96 62.5
SGA_v2.0_scaffold5G02899 Striga asiatica HOM05D004470 ORTHO05D005079 1.5e-26 122.9 84 70.2
MD07G1055000 Malus domestica HOM05D004470 ORTHO05D005079 2.0e-26 122.5 85 71.8
HPP92_027934 Vanilla planifolia HOM05D004470 ORTHO05D005079 2.6e-26 122.1 87 67.8
Cc02_g35220 Coffea canephora HOM05D004470 ORTHO05D005079 3.4e-26 121.7 110 60.0
HPP92_002708 Vanilla planifolia HOM05D004470 ORTHO05D005079 7.7e-26 120.6 89 65.2
Migut.N00943 Erythranthe guttata HOM05D004470 ORTHO05D005079 1.0e-25 120.2 91 65.9
Cfa006723 Carpinus fangiana HOM05D004470 ORTHO05D005079 3.8e-25 118.2 83 71.1
DCAR_025290 Daucus carota HOM05D004470 ORTHO05D005079 1.9e-24 115.9 89 67.4
Nn4g25533 Nelumbo nucifera HOM05D004470 ORTHO05D005079 1.9e-24 115.9 160 45.6
Sabra05G0008600 Salix brachista HOM05D004470 ORTHO05D005079 1.9e-24 115.9 128 50.8
HPP92_002665 Vanilla planifolia HOM05D004470 ORTHO05D005079 2.5e-24 115.5 87 64.4
Hund21865 Selenicereus undatus HOM05D004470 ORTHO05D005079 3.2e-24 115.2 78 71.8
Os01g0299400 Oryza sativa ssp. japonica HOM05D004470 ORTHO05D005079 9.4e-24 113.6 84 65.5
MD15G1427600 Malus domestica HOM05D004470 ORTHO05D005079 7.9e-23 110.5 69 76.8
Zm00001eb340410 Zea mays HOM05D004470 ORTHO05D005079 1.0e-22 110.2 85 64.7
Zm00001eb130040 Zea mays HOM05D004470 ORTHO05D005079 1.4e-22 109.8 83 65.1
ECA238G3981 Erigeron canadensis HOM05D004470 ORTHO05D005079 3.0e-22 108.6 112 53.6
Oeu000058.1 Olea europaea HOM05D004470 ORTHO05D005079 8.8e-22 107.1 106 51.9
HanXRQChr14g0445721 Helianthus annuus HOM05D004470 ORTHO05D005079 1.5e-21 106.3 112 54.5
Lsat_1_v5_gn_2_67201 Lactuca sativa HOM05D004470 ORTHO05D005079 1.5e-21 106.3 102 56.9
Os10g0150200 Oryza sativa ssp. japonica HOM05D004470 ORTHO05D005079 1.5e-21 106.3 83 63.9
FAN26G0538 Fragaria x ananassa HOM05D004470 ORTHO05D005079 9.7e-21 103.6 97 64.9
FAN28G2801 Fragaria x ananassa HOM05D004470 ORTHO05D005079 1.7e-20 102.8 88 67.0
Thhalv10026672m.g Eutrema salsugineum HOM05D004470 ORTHO05D005079 5.3e-19 97.8 66 75.8
VMungo0720G0966 Vigna mungo HOM05D004470 ORTHO05D005079 1.2e-18 96.7 68 75.0
Rhsim11G0097400 Rhododendron simsii HOM05D004470 ORTHO05D005079 1.0e-17 93.6 112 53.6
Lju926A3T37 Lonicera japonica HOM05D004470 ORTHO05D005079 2.2e-17 92.4 59 76.3
C02p58610 Brassica napus HOM05D004470 ORTHO05D005079 2.9e-17 92.0 74 64.9
BcaC03g17832 Brassica carinata HOM05D004470 ORTHO05D005079 5.0e-17 91.3 70 67.1
BcaNung06220 Brassica carinata HOM05D004470 ORTHO05D005079 5.0e-17 91.3 70 67.1
vmacro01577 Vaccinium macrocarpon HOM05D004470 ORTHO05D005079 5.0e-17 91.3 106 55.7
Aa31LG1G17020 Aethionema arabicum HOM05D004470 ORTHO05D005079 3.2e-16 88.6 84 58.3
FvH4_6g32060 Fragaria vesca HOM05D004470 ORTHO05D005079 7.2e-16 87.4 60 73.3
AUR62000416 Chenopodium quinoa HOM05D004470 ORTHO05D005079 1.2e-15 86.7 63 71.4
DCAR_002036 Daucus carota HOM05D004470 ORTHO05D005079 2.7e-15 85.5 60 73.3
Mapoly0164s0021 Marchantia polymorpha HOM05D004470 ORTHO05D005079 3.6e-15 85.1 69 59.4
AagrBONN_evm.TU.Sc2ySwM_228.963 Anthoceros agrestis HOM05D004470 ORTHO05D005079 2.3e-14 82.4 68 54.4
Eucgr.H03248 Eucalyptus grandis HOM05D004470 ORTHO05D005079 5.2e-14 81.3 73 58.9
Sc18g0006160 Simmondsia chinensis HOM05D004470 ORTHO05D005079 1.1e-13 80.1 62 66.1
Rhsim05G0127900 Rhododendron simsii HOM05D004470 ORTHO05D005079 4.4e-13 78.2 51 76.5
Cpa.g.sc48.175 Carica papaya HOM05D004470 ORTHO05D005079 3.7e-12 75.1 54 70.4
unitig_37.g12917 Utricularia gibba HOM05D004470 ORTHO05D005079 1.4e-11 73.2 57 64.9
HanXRQChr15g0471581 Helianthus annuus HOM05D004470 ORTHO05D005079 3.1e-11 72.0 78 51.3
Pp3c6_8090 Physcomitrium patens HOM05D004470 ORTHO05D005079 3.1e-11 72.0 68 50.0
A02p39020 Brassica napus HOM05D004470 ORTHO05D005079 2.6e-10 68.9 63 58.7
AUR62036369 Chenopodium quinoa HOM05D004470 ORTHO05D005079 1.7e-09 66.2 46 69.6
SEGI_31285 Sequoiadendron giganteum HOM05D004470 ORTHO05D005079 2.9e-09 65.5 73 49.3
BolC2t11922H Brassica oleracea HOM05D004470 ORTHO05D005079 8.5e-09 63.9 70 51.4
AUR62033672 Chenopodium quinoa HOM05D004470 ORTHO05D005079 8.5e-09 63.9 49 69.4
SMO116G0179 Selaginella moellendorffii HOM05D004470 ORTHO05D005079 2.5e-08 62.4 65 44.6
SMO195G0040 Selaginella moellendorffii HOM05D000001 ORTHO05D005079 2.5e-08 62.4 65 44.6
SHI42436 Sapria himalayana HOM05D004470 ORTHO05D005079 3.2e-08 62.0 52 55.8
vmacro19787 Vaccinium macrocarpon HOM05D000003 ORTHO05D005079 3.0e-06 55.5 54 51.9


User provided reference genes

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