Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO541G1352 Papaver somniferum HOM05D036402 ORTHO05D303018 8.8e-207 723.4 366 100.0
PSO541G0992 Papaver somniferum HOM05D036402 ORTHO05D303546 6.5e-93 345.1 167 98.8
PSO541G5919 Papaver somniferum HOM05D036402 ORTHO05D304504 3.1e-55 219.9 117 91.5
Sabra01G0033300 Salix brachista HOM05D003042 ORTHO05D003670 1.5e-25 121.3 255 34.1
VMungo0540G1529 Vigna mungo HOM05D003042 ORTHO05D003670 3.2e-23 113.6 254 32.3
MSTRG.16568 Avicennia marina HOM05D003042 ORTHO05D003670 1.6e-22 111.3 254 33.1
Manes.04G104800 Manihot esculenta HOM05D003042 ORTHO05D003670 2.3e-21 107.5 207 35.7
MSTRG.27785 Avicennia marina HOM05D003042 ORTHO05D003670 6.6e-21 105.9 254 32.3
COL.COLO4_00107 Corchorus olitorius HOM05D003042 ORTHO05D003670 2.5e-20 104.0 254 31.9
Hund06531 Selenicereus undatus HOM05D003042 ORTHO05D003670 1.8e-18 97.8 215 34.0
Potri.001G048100 Populus trichocarpa HOM05D003042 ORTHO05D003670 1.5e-17 94.7 254 30.3
TAR376G0906 Trochodendron aralioides HOM05D003042 ORTHO05D003670 1.5e-17 94.7 258 30.6
PSO541G5257 Papaver somniferum HOM05D003042 ORTHO05D003670 1.3e-16 91.7 250 30.0
PSO675G4282 Papaver somniferum HOM05D003042 ORTHO05D003670 1.3e-16 91.7 250 30.0
Lj9A319T64 Lonicera japonica HOM05D003042 ORTHO05D003670 2.2e-16 90.9 250 30.4
Actinidia38973 Actinidia chinensis HOM05D003042 ORTHO05D003670 2.9e-16 90.5 254 29.9
Lj5C242G9 Lonicera japonica HOM05D003042 ORTHO05D003670 3.8e-16 90.1 237 30.4
CSS0010904 Camellia sinensis var. sinensis HOM05D003042 ORTHO05D003670 8.4e-16 89.0 250 29.6
CSS0033117 Camellia sinensis var. sinensis HOM05D003042 ORTHO05D003670 8.4e-16 89.0 250 29.6
HanXRQChr17g0547761 Helianthus annuus HOM05D003042 ORTHO05D003670 1.1e-15 88.6 254 29.5
Potri.003G180000 Populus trichocarpa HOM05D003042 ORTHO05D003670 1.1e-15 88.6 254 29.1
Rhsim11G0134900 Rhododendron simsii HOM05D003042 ORTHO05D003670 1.1e-15 88.6 250 30.0
Dinv24214 Davidia involucrata HOM05D003042 ORTHO05D003670 1.4e-15 88.2 254 29.1
Nn5g28955 Nelumbo nucifera HOM05D003042 ORTHO05D003670 1.4e-15 88.2 252 28.6
TWI12G0856 Tripterygium wilfordii HOM05D003042 ORTHO05D003670 1.4e-15 88.2 250 28.8
GSVIVG01017573001 Vitis vinifera HOM05D003042 ORTHO05D003670 1.4e-15 88.2 250 29.2
arahy.Tifrunner.gnm1.ann1.50NPKB Arachis hypogaea HOM05D003042 ORTHO05D003670 1.9e-15 87.8 254 28.0
arahy.Tifrunner.gnm1.ann1.HI3N32 Arachis hypogaea HOM05D003042 ORTHO05D003670 1.9e-15 87.8 254 28.0
Dinv09049 Davidia involucrata HOM05D003042 ORTHO05D003670 1.9e-15 87.8 254 29.1
TAR381G1117 Trochodendron aralioides HOM05D003042 ORTHO05D003670 1.9e-15 87.8 262 28.2
Cc02_g21810 Coffea canephora HOM05D003042 ORTHO05D003670 2.4e-15 87.4 250 29.2
EL10Ac9g22228 Beta vulgaris HOM05D003042 ORTHO05D003670 3.2e-15 87.0 260 29.6
Sabra03G0131800 Salix brachista HOM05D003042 ORTHO05D003670 3.2e-15 87.0 260 29.6
Ciclev10025978m.g Citrus clementina HOM05D003042 ORTHO05D003670 4.2e-15 86.7 251 29.1
COL.COLO4_26659 Corchorus olitorius HOM05D003042 ORTHO05D003670 7.1e-15 85.9 250 28.8
Glyma.15G051700 Glycine max HOM05D003042 ORTHO05D003670 7.1e-15 85.9 254 27.6
Phvul.006G208000 Phaseolus vulgaris HOM05D003042 ORTHO05D003670 7.1e-15 85.9 254 28.0
GSVIVG01029758001 Vitis vinifera HOM05D003042 ORTHO05D003670 7.1e-15 85.9 254 28.7
Glyma.08G180700 Glycine max HOM05D003042 ORTHO05D003670 9.3e-15 85.5 254 27.6
Lsat_1_v5_gn_7_79840 Lactuca sativa HOM05D003042 ORTHO05D003670 9.3e-15 85.5 250 29.2
Ca_10499_v3 Cicer arietinum L. HOM05D003042 ORTHO05D003670 1.6e-14 84.7 250 28.4
Hma1.2p1_1341F.1_g276910 Hydrangea macrophylla HOM05D003042 ORTHO05D003670 1.6e-14 84.7 250 30.0
Haze_16644 Corylus avellana HOM05D003042 ORTHO05D003670 2.7e-14 84.0 196 33.7
Duzib192G0087 Durio zibethinus HOM05D003042 ORTHO05D003670 2.7e-14 84.0 254 27.2
Eucgr.J03099 Eucalyptus grandis HOM05D003042 ORTHO05D003670 2.7e-14 84.0 250 28.8
Gohir.A05G120500 Gossypium hirsutum HOM05D003042 ORTHO05D003670 2.7e-14 84.0 254 27.2
Gohir.D05G121500 Gossypium hirsutum HOM05D003042 ORTHO05D003670 2.7e-14 84.0 254 27.2
Gorai.009G125000 Gossypium raimondii HOM05D003042 ORTHO05D003670 2.7e-14 84.0 255 27.5
PGR031G1207 Punica granatum HOM05D003042 ORTHO05D003670 2.7e-14 84.0 254 27.6
Thecc.06G038500 Theobroma cacao HOM05D003042 ORTHO05D003670 2.7e-14 84.0 254 27.6
Duzib160G0927 Durio zibethinus HOM05D003042 ORTHO05D003670 3.5e-14 83.6 254 28.0
Medtr8g068875 Medicago truncatula HOM05D003042 ORTHO05D003670 3.5e-14 83.6 254 28.3
Atru.chr10.2391 Acer truncatum HOM05D003042 ORTHO05D003670 4.6e-14 83.2 250 27.6
Aqoxy6G00507 Aquilegia oxysepala HOM05D003042 ORTHO05D003670 4.6e-14 83.2 258 27.9
Migut.B00632 Erythranthe guttata HOM05D003042 ORTHO05D003670 4.6e-14 83.2 250 28.4
PGR142G0215 Punica granatum HOM05D003042 ORTHO05D003670 4.6e-14 83.2 254 28.7
Thecc.02G142800 Theobroma cacao HOM05D003042 ORTHO05D003670 4.6e-14 83.2 254 27.6
TPR.G2525 Trifolium pratense HOM05D003042 ORTHO05D003670 4.6e-14 83.2 250 27.6
Glyma.02G124400 Glycine max HOM05D003042 ORTHO05D003670 6.0e-14 82.8 250 28.0
Lj3g0027683 Lotus japonicus HOM05D003042 ORTHO05D003670 6.0e-14 82.8 250 28.4
Phvul.003G032400 Phaseolus vulgaris HOM05D003042 ORTHO05D003670 6.0e-14 82.8 254 27.6
Psat6g176840 Pisum sativum HOM05D003042 ORTHO05D003670 6.0e-14 82.8 254 28.0
FAN18G2061 Fragaria x ananassa HOM05D003042 ORTHO05D003670 7.8e-14 82.4 229 28.4
arahy.Tifrunner.gnm1.ann1.KZIJ4I Arachis hypogaea HOM05D003042 ORTHO05D003670 1.0e-13 82.0 260 27.7
Eucgr.J03097 Eucalyptus grandis HOM05D003042 ORTHO05D003670 1.0e-13 82.0 258 27.9
Mapoly0084s0068 Marchantia polymorpha HOM05D003042 ORTHO05D003670 1.0e-13 82.0 250 28.8
RcHm_v2.0_Chr2g0115621 Rosa chinensis HOM05D003042 ORTHO05D003670 1.0e-13 82.0 253 27.3
arahy.Tifrunner.gnm1.ann1.QL4S9I Arachis hypogaea HOM05D003042 ORTHO05D003670 1.3e-13 81.6 261 27.6
CDE10G1271 Ceratophyllum demersum HOM05D003042 ORTHO05D003670 1.3e-13 81.6 250 29.2
CDE10G1274 Ceratophyllum demersum HOM05D003042 ORTHO05D003670 1.3e-13 81.6 250 29.2
DCAR_021842 Daucus carota HOM05D003042 ORTHO05D003670 1.3e-13 81.6 250 28.4
FAN13G0196 Fragaria x ananassa HOM05D003042 ORTHO05D003670 1.3e-13 81.6 255 27.8
HanXRQChr03g0067001 Helianthus annuus HOM05D003042 ORTHO05D003670 1.3e-13 81.6 249 28.9
Psat0s1783g0040 Pisum sativum HOM05D003042 ORTHO05D003670 1.3e-13 81.6 254 27.2
Ca_00120_v3 Cicer arietinum L. HOM05D003042 ORTHO05D003670 1.7e-13 81.3 254 26.4
ClCG08G001160 Citrullus lanatus HOM05D003042 ORTHO05D003670 1.7e-13 81.3 142 37.3
FAN04G1953 Fragaria x ananassa HOM05D003042 ORTHO05D003670 1.7e-13 81.3 155 36.8
AUR62027381 Chenopodium quinoa HOM05D003042 ORTHO05D003670 2.3e-13 80.9 250 27.6
AUR62031295 Chenopodium quinoa HOM05D003042 ORTHO05D003670 2.3e-13 80.9 250 27.6
Thhalv10018796m.g Eutrema salsugineum HOM05D003042 ORTHO05D003670 2.3e-13 80.9 254 27.6
Sp5g35090 Schrenkiella parvula HOM05D003042 ORTHO05D003670 2.3e-13 80.9 254 28.0
Actinidia00254 Actinidia chinensis HOM05D003042 ORTHO05D003670 3.0e-13 80.5 142 35.9
Glyma.01G067900 Glycine max HOM05D003042 ORTHO05D003670 3.0e-13 80.5 250 27.6
unitig_748.g7493 Utricularia gibba HOM05D003042 ORTHO05D003670 3.0e-13 80.5 258 27.9
Lalb_Chr04g0264341 Lupinus albus HOM05D003042 ORTHO05D003670 3.9e-13 80.1 260 27.7
vmacro01812 Vaccinium macrocarpon HOM05D003042 ORTHO05D003670 3.9e-13 80.1 256 28.1
ECA236G1689 Erigeron canadensis HOM05D003042 ORTHO05D003670 5.1e-13 79.7 142 35.9
Lalb_Chr25g0279011 Lupinus albus HOM05D003042 ORTHO05D003670 5.1e-13 79.7 249 28.5
A02p23240 Brassica napus HOM05D003042 ORTHO05D003670 6.6e-13 79.3 254 28.0
A07p26780 Brassica napus HOM05D003042 ORTHO05D003670 6.6e-13 79.3 262 26.7
C02p37000 Brassica napus HOM05D003042 ORTHO05D003670 6.6e-13 79.3 254 28.0
BraA02t07322Z Brassica rapa HOM05D003042 ORTHO05D003670 6.6e-13 79.3 254 28.0
Ah.01g006780 Amaranthus hybridus HOM05D000263 ORTHO05D000213 8.7e-13 79.0 148 35.8
AT1G80670 Arabidopsis thaliana HOM05D003042 ORTHO05D003670 8.7e-13 79.0 254 27.6
MELO3C022166.2 Cucumis melo HOM05D003042 ORTHO05D003670 8.7e-13 79.0 254 27.6
C06p53860 Brassica napus HOM05D003042 ORTHO05D003670 1.1e-12 78.6 254 27.2
CARHR073850 Cardamine hirsuta HOM05D003042 ORTHO05D003670 1.1e-12 78.6 250 27.6
CsaV3_5G039870 Cucumis sativus L. HOM05D003042 ORTHO05D003670 1.1e-12 78.6 254 27.6
QL05p034606 Quercus lobata HOM05D003042 ORTHO05D003670 1.1e-12 78.6 250 28.4
QL05p034855 Quercus lobata HOM05D003042 ORTHO05D003670 1.1e-12 78.6 250 28.4
QL11p019662 Quercus lobata HOM05D003042 ORTHO05D003670 1.1e-12 78.6 142 34.5
Sed0018036 Sechium edule HOM05D003042 ORTHO05D003670 1.1e-12 78.6 254 27.6
BolC6t40401H Brassica oleracea HOM05D003042 ORTHO05D003670 1.5e-12 78.2 254 27.2
Psat1g218040 Pisum sativum HOM05D003042 ORTHO05D003670 1.5e-12 78.2 250 26.4
SGA_v2.0_scaffold45G17302 Striga asiatica HOM05D003042 ORTHO05D003670 1.5e-12 78.2 250 27.6
ATR0564G171 Amborella trichopoda HOM05D003042 ORTHO05D003670 1.9e-12 77.8 250 28.0
BraA07t30321Z Brassica rapa HOM05D003042 ORTHO05D003670 1.9e-12 77.8 254 27.2
A07p45040 Brassica napus HOM05D003042 ORTHO05D003670 2.5e-12 77.4 254 27.2
BraA07t32007Z Brassica rapa HOM05D003042 ORTHO05D003670 2.5e-12 77.4 254 27.2
CiPaw.01G252700 Carya illinoinensis HOM05D003042 ORTHO05D003670 2.5e-12 77.4 254 28.0
TPR.G13617 Trifolium pratense HOM05D003042 ORTHO05D003670 2.5e-12 77.4 250 26.0
BcaB02g07258 Brassica carinata HOM05D003042 ORTHO05D003670 3.3e-12 77.0 138 32.6
FAN26G0050 Fragaria x ananassa HOM05D003042 ORTHO05D003670 3.3e-12 77.0 238 27.7
AL2G40770 Arabidopsis lyrata HOM05D003042 ORTHO05D003670 4.3e-12 76.6 254 27.2
BcaB05g25236 Brassica carinata HOM05D003042 ORTHO05D003670 4.3e-12 76.6 254 27.6
CSS0003437 Camellia sinensis var. sinensis HOM05D003042 ORTHO05D003670 4.3e-12 76.6 247 27.5
Carub.0002s2689 Capsella rubella HOM05D003042 ORTHO05D003670 4.3e-12 76.6 254 27.2
FvH4_1g21750 Fragaria vesca HOM05D003042 ORTHO05D003670 4.3e-12 76.6 253 26.9
FvH4_5g30850 Fragaria vesca HOM05D003042 ORTHO05D003670 4.3e-12 76.6 259 27.0
Medtr1g492860 Medicago truncatula HOM05D003042 ORTHO05D003670 4.3e-12 76.6 254 26.8
Migut.N01008 Erythranthe guttata HOM05D003042 ORTHO05D003670 5.6e-12 76.3 248 28.2
FAN19G2892 Fragaria x ananassa HOM05D003042 ORTHO05D003670 5.6e-12 76.3 224 27.7
RcHm_v2.0_Chr7g0225991 Rosa chinensis HOM05D003042 ORTHO05D003670 5.6e-12 76.3 255 27.1
EL10Ac8g19347 Beta vulgaris HOM05D003042 ORTHO05D003670 7.3e-12 75.9 262 27.5
BolC2t09716H Brassica oleracea HOM05D003042 ORTHO05D003670 7.3e-12 75.9 254 28.0
FAN28G0628 Fragaria x ananassa HOM05D003042 ORTHO05D003670 9.6e-12 75.5 253 26.5
Lj2g0012532 Lotus japonicus HOM05D003042 ORTHO05D003670 9.6e-12 75.5 260 26.5
Lj6g0022000 Lotus japonicus HOM05D003042 ORTHO05D003670 9.6e-12 75.5 250 26.8
HPP92_002339 Vanilla planifolia HOM05D003042 ORTHO05D003670 9.6e-12 75.5 250 28.4
Lsat_1_v5_gn_9_117540 Lactuca sativa HOM05D003042 ORTHO05D003670 1.3e-11 75.1 249 27.7
AT1G15850 Arabidopsis thaliana HOM05D003042 ORTHO05D003670 1.6e-11 74.7 109 36.7
MD08G1221600 Malus domestica HOM05D003042 ORTHO05D003670 1.6e-11 74.7 254 27.2
THA.LOC104812445 Tarenaya hassleriana HOM05D003042 ORTHO05D003670 1.6e-11 74.7 254 27.2
THA.LOC104813581 Tarenaya hassleriana HOM05D003042 ORTHO05D003670 1.6e-11 74.7 254 26.0
Medtr2g008410 Medicago truncatula HOM05D003042 ORTHO05D003670 2.1e-11 74.3 251 26.3
Hund12671 Selenicereus undatus HOM05D003042 ORTHO05D003670 2.1e-11 74.3 261 26.4
Cfa001896 Carpinus fangiana HOM05D003042 ORTHO05D003670 2.8e-11 73.9 254 27.2
SGA_v2.0_scaffold60G20842 Striga asiatica HOM05D003042 ORTHO05D003670 2.8e-11 73.9 104 37.5
ECA240G1546 Erigeron canadensis HOM05D003042 ORTHO05D003670 3.6e-11 73.6 249 27.3
BcaC08g45331 Brassica carinata HOM05D003042 ORTHO05D003670 4.8e-11 73.2 142 32.4
FAN23G0925 Fragaria x ananassa HOM05D003042 ORTHO05D003670 6.2e-11 72.8 253 26.5
PRCOL_00006870 Prasinoderma coloniale HOM05D003042 ORTHO05D003670 6.2e-11 72.8 253 27.7
Aqoxy5G00985 Aquilegia oxysepala HOM05D003042 ORTHO05D003670 1.1e-10 72.0 142 31.7
Aa31LG4G950 Aethionema arabicum HOM05D003042 ORTHO05D003670 1.4e-10 71.6 260 25.8
FAN08G0963 Fragaria x ananassa HOM05D003042 ORTHO05D003670 1.4e-10 71.6 143 32.9
FAN18G2183 Fragaria x ananassa HOM05D003042 ORTHO05D003670 1.4e-10 71.6 143 32.9
MD15G1412500 Malus domestica HOM05D003042 ORTHO05D003670 1.4e-10 71.6 254 26.8
Prupe.1G558700 Prunus persica HOM05D003042 ORTHO05D003670 1.8e-10 71.2 252 26.6
Prupe.7G019500 Prunus persica HOM05D003042 ORTHO05D003670 1.8e-10 71.2 252 26.6
C06p29410 Brassica napus HOM05D003042 ORTHO05D003670 2.4e-10 70.9 244 25.8
BolC6t38106H Brassica oleracea HOM05D003042 ORTHO05D003670 2.4e-10 70.9 244 25.8
Ciclev10026682m.g Citrus clementina HOM05D003042 ORTHO05D003670 3.1e-10 70.5 90 46.7
FvH4_5g10180 Fragaria vesca HOM05D003042 ORTHO05D003670 3.1e-10 70.5 254 26.0
FAN18G0772 Fragaria x ananassa HOM05D003042 ORTHO05D003670 3.1e-10 70.5 254 26.0
Sc14g0002700 Simmondsia chinensis HOM05D003042 ORTHO05D003670 3.1e-10 70.5 142 31.7
Peaxi162Scf00003g03627 Petunia axillaris HOM05D003042 ORTHO05D003670 4.0e-10 70.1 138 33.3
Nitab4.5_0000078g0100 Nicotiana tabacum HOM05D003042 ORTHO05D003670 9.0e-10 68.9 250 26.8
Nitab4.5_0005663g0040 Nicotiana tabacum HOM05D003042 ORTHO05D003670 9.0e-10 68.9 250 26.8
Duzib248G0201 Durio zibethinus HOM05D003042 ORTHO05D003670 1.2e-09 68.6 142 31.0
Pp3c18_21020 Physcomitrium patens HOM05D003042 ORTHO05D003670 1.2e-09 68.6 250 26.0
RcHm_v2.0_Chr7g0188071 Rosa chinensis HOM05D003042 ORTHO05D003670 5.8e-09 66.2 254 24.8
Aqoxy4G02433 Aquilegia oxysepala HOM05D000096 ORTHO05D000045 7.6e-09 65.9 103 34.0
TPR.G2563 Trifolium pratense HOM05D003042 ORTHO05D003670 1.7e-08 64.7 253 26.1
Cpa.g.sc10.109 Carica papaya HOM05D003042 ORTHO05D003670 2.2e-08 64.3 238 26.1
Prupe.5G049100 Prunus persica HOM05D003042 ORTHO05D003670 6.4e-08 62.8 140 30.7
SEGI_36864 Sequoiadendron giganteum HOM05D003042 ORTHO05D003670 6.4e-08 62.8 109 33.9
SMO147G0311 Selaginella moellendorffii HOM05D003042 ORTHO05D003670 8.4e-08 62.4 142 32.4
ATR0763G056 Amborella trichopoda HOM05D003042 ORTHO05D003670 2.4e-07 60.8 88 40.9
AL1G28010 Arabidopsis lyrata HOM05D003042 ORTHO05D003670 4.2e-07 60.1 142 28.9
VMungo1215G0777 Vigna mungo HOM05D003042 ORTHO05D003670 1.2e-06 58.5 78 38.5
Haze_13445 Corylus avellana HOM05D003042 ORTHO05D003670 2.7e-06 57.4 249 24.1


User provided reference genes

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