Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO478G3379 Papaver somniferum HOM05D004562 ORTHO05D005435 0.0e+00 2155.9 1111 100.0
PSO017G6436 Papaver somniferum HOM05D004562 ORTHO05D005435 0.0e+00 2003.8 1109 93.4
Nn4g24285 Nelumbo nucifera HOM05D004562 ORTHO05D005435 0.0e+00 1103.2 1142 56.0
Aqoxy3G00029 Aquilegia oxysepala HOM05D004562 ORTHO05D005435 0.0e+00 1086.2 1153 54.3
MBI13_g01852_MAGBIO Magnolia biondii HOM05D004562 ORTHO05D005435 0.0e+00 1083.9 1170 53.7
Dinv02642 Davidia involucrata HOM05D004562 ORTHO05D005435 1.6e-304 1049.7 1167 52.5
QL10p030682 Quercus lobata HOM05D004562 ORTHO05D005435 1.4e-295 1020.0 1162 52.4
COL.COLO4_28896 Corchorus olitorius HOM05D004562 ORTHO05D005435 3.0e-290 1002.3 1173 51.5
Cfa019638 Carpinus fangiana HOM05D004562 ORTHO05D005435 3.3e-289 998.8 1177 50.7
Gorai.008G290800 Gossypium raimondii HOM05D004562 ORTHO05D005435 4.3e-289 998.4 1162 51.2
FAN18G3714 Fragaria x ananassa HOM05D004562 ORTHO05D005435 8.4e-285 984.2 1164 50.6
FvH4_5g17490 Fragaria vesca HOM05D004562 ORTHO05D005435 3.2e-284 982.2 1164 50.5
FAN08G1802 Fragaria x ananassa HOM05D004562 ORTHO05D005435 1.7e-282 976.5 1166 50.2
RcHm_v2.0_Chr7g0178201 Rosa chinensis HOM05D004562 ORTHO05D005435 3.9e-282 975.3 1173 50.1
Ciclev10007290m.g Citrus clementina HOM05D004562 ORTHO05D005435 8.6e-282 974.2 1156 49.1
FAN04G0449 Fragaria x ananassa HOM05D004562 ORTHO05D005435 3.3e-281 972.2 1167 49.9
CANSAT80G2549 Cannabis sativa HOM05D004562 ORTHO05D005435 5.6e-281 971.5 1147 50.6
Nn3g18314 Nelumbo nucifera HOM05D004562 ORTHO05D005435 1.2e-280 970.3 1214 48.9
FAN13G2245 Fragaria x ananassa HOM05D004562 ORTHO05D005435 2.1e-280 969.5 1168 49.7
MD14G1237500 Malus domestica HOM05D004562 ORTHO05D005435 2.9e-277 959.1 1145 49.5
Actinidia35140 Actinidia chinensis HOM05D004562 ORTHO05D005435 1.1e-276 957.2 1167 49.3
GSVIVG01008458001 Vitis vinifera HOM05D004562 ORTHO05D005435 9.3e-276 954.1 1127 50.5
Rhsim12G0137700 Rhododendron simsii HOM05D004562 ORTHO05D005435 1.0e-274 950.7 1169 48.4
PGR044G1246 Punica granatum HOM05D004562 ORTHO05D005435 3.3e-273 945.7 1144 49.5
PGSC0003DMG400005676 Solanum tuberosum HOM05D004562 ORTHO05D005435 7.3e-273 944.5 1148 49.7
Peaxi162Scf00314g00332 Petunia axillaris HOM05D004562 ORTHO05D005435 1.4e-271 940.3 1149 48.9
TWI60G0891 Tripterygium wilfordii HOM05D004562 ORTHO05D005435 1.8e-271 939.9 1155 48.9
CAN.G843.49 Capsicum annuum HOM05D004562 ORTHO05D005435 2.2e-269 932.9 1138 49.5
Sopen03g037570 Solanum pennellii HOM05D004562 ORTHO05D005435 6.4e-269 931.4 1139 49.5
MD06G1228300 Malus domestica HOM05D004562 ORTHO05D005435 8.4e-269 931.0 1142 48.9
ATR0753G019 Amborella trichopoda HOM05D004562 ORTHO05D005435 1.2e-267 927.2 1169 48.1
Solyc03g118620.3 Solanum lycopersicum HOM05D004562 ORTHO05D005435 3.5e-267 925.6 1137 49.3
Glyma.08G055400 Glycine max HOM05D004562 ORTHO05D005435 1.3e-266 923.7 1131 49.7
CsaV3_1G004480 Cucumis sativus L. HOM05D004562 ORTHO05D005435 8.7e-266 921.0 1147 48.6
Potri.015G036300 Populus trichocarpa HOM05D004562 ORTHO05D005435 9.6e-265 917.5 1144 48.2
Sed0003970 Sechium edule HOM05D004562 ORTHO05D005435 9.6e-265 917.5 1140 49.2
Lj4g0011431 Lotus japonicus HOM05D004562 ORTHO05D005435 2.1e-264 916.4 1136 49.8
Sed0022497 Sechium edule HOM05D004562 ORTHO05D005435 2.4e-263 912.9 1146 48.7
Glyma.05G247000 Glycine max HOM05D004562 ORTHO05D005435 1.2e-262 910.6 1134 49.3
Medtr8g107440 Medicago truncatula HOM05D004562 ORTHO05D005435 5.8e-262 908.3 1128 49.6
Lalb_Chr09g0330331 Lupinus albus HOM05D004562 ORTHO05D005435 8.4e-261 904.4 1150 48.6
MSTRG.9309 Avicennia marina HOM05D004562 ORTHO05D005435 4.2e-260 902.1 1163 47.5
vmacro16407 Vaccinium macrocarpon HOM05D004562 ORTHO05D005435 1.3e-258 897.1 1171 47.5
Cc04_g06100 Coffea canephora HOM05D004562 ORTHO05D005435 3.0e-258 896.0 1117 49.7
Ca_17180_v3 Cicer arietinum L. HOM05D004562 ORTHO05D005435 3.7e-256 889.0 1129 48.3
Gohir.D12G270500 Gossypium hirsutum HOM05D004562 ORTHO05D005435 3.7e-256 889.0 1010 52.3
arahy.Tifrunner.gnm1.ann1.WQ60SD Arachis hypogaea HOM05D004562 ORTHO05D005435 1.8e-255 886.7 1130 48.2
Haze_18884 Corylus avellana HOM05D004562 ORTHO05D005435 5.3e-255 885.2 1173 47.5
Manes.06G004700 Manihot esculenta HOM05D004562 ORTHO05D005435 6.9e-255 884.8 1131 47.9
Lalb_Chr05g0221581 Lupinus albus HOM05D004562 ORTHO05D005435 9.0e-255 884.4 1133 48.0
Psat7g001240 Pisum sativum HOM05D004562 ORTHO05D005435 1.5e-254 883.6 1132 47.7
Prupe.5G234800 Prunus persica HOM05D004562 ORTHO05D005435 1.5e-254 883.6 1013 51.7
AUR62029906 Chenopodium quinoa HOM05D004562 ORTHO05D005435 3.2e-252 875.9 1145 47.9
Sabra15G0029800 Salix brachista HOM05D004562 ORTHO05D005435 4.2e-252 875.5 1158 47.3
MELO3C017375.2 Cucumis melo HOM05D004562 ORTHO05D005435 2.7e-251 872.8 1059 49.8
Oeu026264.3 Olea europaea HOM05D004562 ORTHO05D005435 4.6e-251 872.1 1198 44.2
EL10Ac8g19501 Beta vulgaris HOM05D004562 ORTHO05D005435 2.3e-250 869.8 1140 47.1
AUR62033795 Chenopodium quinoa HOM05D004562 ORTHO05D005435 8.7e-250 867.8 1156 46.7
HanXRQChr09g0268071 Helianthus annuus HOM05D004562 ORTHO05D005435 1.3e-248 864.0 1124 46.6
Eucgr.K02277 Eucalyptus grandis HOM05D004562 ORTHO05D005435 2.2e-248 863.2 1147 47.9
TAR374G0462 Trochodendron aralioides HOM05D004562 ORTHO05D005435 1.3e-245 854.0 738 63.7
TPR.G1465 Trifolium pratense HOM05D004562 ORTHO05D005435 1.7e-245 853.6 1113 48.0
THA.LOC104820345 Tarenaya hassleriana HOM05D004562 ORTHO05D005435 1.1e-244 850.9 1155 46.2
HPP92_016742 Vanilla planifolia HOM05D004562 ORTHO05D005435 1.4e-244 850.5 1149 45.1
Gohir.A12G270000 Gossypium hirsutum HOM05D004562 ORTHO05D005435 4.2e-244 849.0 978 51.5
CiPaw.15G144500 Carya illinoinensis HOM05D004562 ORTHO05D005435 2.5e-241 839.7 957 52.0
VMungo0251G1597 Vigna mungo HOM05D004562 ORTHO05D005435 7.4e-241 838.2 1127 46.6
Phvul.002G331100 Phaseolus vulgaris HOM05D004562 ORTHO05D005435 1.7e-240 837.0 975 50.3
ClCG06G014190 Citrullus lanatus HOM05D004562 ORTHO05D005435 3.7e-240 835.9 1144 46.3
arahy.Tifrunner.gnm1.ann1.G227WQ Arachis hypogaea HOM05D004562 ORTHO05D005435 2.4e-239 833.2 1133 46.9
Thecc.03G058700 Theobroma cacao HOM05D004562 ORTHO05D005435 5.0e-237 825.5 1173 46.8
Ah.14g085940 Amaranthus hybridus HOM05D004562 ORTHO05D005435 1.4e-236 823.9 1133 45.5
Sc12g0007950 Simmondsia chinensis HOM05D004562 ORTHO05D005435 1.6e-235 820.5 1104 46.6
Lsat_1_v5_gn_2_14940 Lactuca sativa HOM05D004562 ORTHO05D005435 1.1e-233 814.3 1116 45.8
Duzib205G1225 Durio zibethinus HOM05D004562 ORTHO05D005435 1.5e-233 813.9 1182 45.7
Aa31LG10G5260 Aethionema arabicum HOM05D004562 ORTHO05D005435 2.0e-233 813.5 1170 44.2
HanXRQChr02g0032401 Helianthus annuus HOM05D004562 ORTHO05D005435 4.4e-233 812.4 1128 44.7
Thhalv10019973m.g Eutrema salsugineum HOM05D004562 ORTHO05D005435 5.7e-233 812.0 1146 45.0
CARHR038150 Cardamine hirsuta HOM05D004562 ORTHO05D005435 1.3e-232 810.8 1141 45.1
Zm00001eb008950 Zea mays HOM05D004562 ORTHO05D005435 3.1e-231 806.2 1163 43.9
Carub.0003s1765 Capsella rubella HOM05D004562 ORTHO05D005435 4.1e-231 805.8 1141 45.0
ECA238G1924 Erigeron canadensis HOM05D004562 ORTHO05D005435 9.1e-231 804.7 1145 44.3
AL3G31090 Arabidopsis lyrata HOM05D004562 ORTHO05D005435 2.0e-230 803.5 1152 44.8
AL1G55180 Arabidopsis lyrata HOM05D004562 ORTHO05D005435 1.3e-229 800.8 1135 44.7
A05p31880 Brassica napus HOM05D004562 ORTHO05D005435 1.7e-229 800.4 1135 44.4
Sp1g35480 Schrenkiella parvula HOM05D004562 ORTHO05D005435 5.0e-229 798.9 1125 44.0
BcaC05g28736 Brassica carinata HOM05D004562 ORTHO05D005435 6.5e-229 798.5 1135 44.0
BolC5t33574H Brassica oleracea HOM05D004562 ORTHO05D005435 6.5e-229 798.5 1135 44.0
BraA05t22020Z Brassica rapa HOM05D004562 ORTHO05D005435 6.5e-229 798.5 1135 44.4
BcaB07g33749 Brassica carinata HOM05D004562 ORTHO05D005435 1.1e-228 797.7 1127 44.5
A06p04420 Brassica napus HOM05D004562 ORTHO05D005435 1.9e-228 797.0 1139 44.2
C05p48370 Brassica napus HOM05D004562 ORTHO05D005435 3.2e-228 796.2 1137 43.9
Sp3g16040 Schrenkiella parvula HOM05D004562 ORTHO05D005435 3.2e-228 796.2 1144 44.0
BcaC08g43044 Brassica carinata HOM05D004562 ORTHO05D005435 4.2e-228 795.8 1144 43.8
C06p03060 Brassica napus HOM05D004562 ORTHO05D005435 7.2e-228 795.0 1144 43.8
BolC6t35426H Brassica oleracea HOM05D004562 ORTHO05D005435 7.2e-228 795.0 1143 44.4
AT3G17920 Arabidopsis thaliana HOM05D004562 ORTHO05D005435 2.7e-227 793.1 1133 44.3
Lj5A159T41 Lonicera japonica HOM05D004562 ORTHO05D005435 5.2e-226 788.9 1181 44.7
BcaB06g25854 Brassica carinata HOM05D004562 ORTHO05D005435 1.1e-225 787.7 1143 44.1
DCAR_011617 Daucus carota HOM05D004562 ORTHO05D005435 5.7e-225 785.4 1144 43.8
Carub.0001s3765 Capsella rubella HOM05D004562 ORTHO05D005435 7.0e-223 778.5 1131 43.6
CiPaw.16G096100 Carya illinoinensis HOM05D004562 ORTHO05D005435 1.7e-221 773.9 899 52.6
Aa31LG8G4790 Aethionema arabicum HOM05D004562 ORTHO05D005435 2.9e-221 773.1 1138 42.8
AT1G48540 Arabidopsis thaliana HOM05D004562 ORTHO05D005435 1.9e-220 770.4 1060 45.2
BraA06t23647Z Brassica rapa HOM05D004562 ORTHO05D005435 2.5e-220 770.0 1169 42.6
Os03g0221800 Oryza sativa ssp. japonica HOM05D004562 ORTHO05D005435 1.6e-219 767.3 1157 43.0
Thhalv10011201m.g Eutrema salsugineum HOM05D004562 ORTHO05D005435 1.1e-215 754.6 1152 42.9
CSS0019251 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 1.2e-211 741.1 701 59.2
Migut.D01318 Erythranthe guttata HOM05D004562 ORTHO05D005435 9.2e-199 698.4 657 58.8
Gorai.005G132200 Gossypium raimondii HOM05D004562 ORTHO05D005435 1.2e-195 688.0 698 56.4
Gohir.D02G121900 Gossypium hirsutum HOM05D004562 ORTHO05D005435 3.6e-195 686.4 698 56.3
SGA_v2.0_scaffold172G39021 Striga asiatica HOM05D004562 ORTHO05D005435 2.9e-192 676.8 817 50.3
Hund22308 Selenicereus undatus HOM05D004562 ORTHO05D005435 1.7e-189 667.5 886 47.7
Actinidia18882 Actinidia chinensis HOM05D004562 ORTHO05D005435 1.2e-187 661.4 870 47.0
CDE05G0309 Ceratophyllum demersum HOM05D004562 ORTHO05D005435 2.3e-186 657.1 1148 38.3
Potri.012G045300 Populus trichocarpa HOM05D004562 ORTHO05D005435 1.5e-185 654.4 516 67.1
Nitab4.5_0001264g0030 Nicotiana tabacum HOM05D004562 ORTHO05D005435 4.4e-185 652.9 553 63.1
SalBow1G2489 Salvia bowleyana HOM05D004562 ORTHO05D005435 5.8e-185 652.5 656 56.6
Nitab4.5_0010397g0020 Nicotiana tabacum HOM05D004562 ORTHO05D005435 4.7e-179 632.9 450 72.0
SEGI_15130 Sequoiadendron giganteum HOM05D004562 ORTHO05D005435 1.4e-175 621.3 940 43.4
Atru.chr9.1669 Acer truncatum HOM05D004562 ORTHO05D005435 6.2e-171 605.9 916 43.0
CARHR093250 Cardamine hirsuta HOM05D004562 ORTHO05D005435 1.8e-170 604.4 866 44.3
unitig_46.g18720 Utricularia gibba HOM05D004562 ORTHO05D005435 8.7e-165 585.5 660 51.4
Cpa.g.sc3.379 Carica papaya HOM05D004562 ORTHO05D005435 1.1e-162 578.6 673 52.2
Manes.14G172200 Manihot esculenta HOM05D004562 ORTHO05D005435 1.1e-162 578.6 911 42.6
Sabra12G0031500 Salix brachista HOM05D004562 ORTHO05D005435 4.0e-146 523.5 978 39.0
Pp3c10_10590 Physcomitrium patens HOM05D004562 ORTHO05D005435 2.0e-129 468.0 657 43.8
Mapoly0118s0042 Marchantia polymorpha HOM05D004562 ORTHO05D005435 3.6e-126 457.2 722 39.9
CSS0009282 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 3.3e-124 450.7 268 84.0
CSS0039239 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 3.3e-124 450.7 268 84.0
Hma1.2p1_0163F.1_g072990 Hydrangea macrophylla HOM05D004562 ORTHO05D005435 1.7e-107 395.2 740 38.4
AagrBONN_evm.TU.Sc2ySwM_228.5527 Anthoceros agrestis HOM05D004562 ORTHO05D005435 1.2e-102 379.0 328 57.0
CSS0042944 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 2.0e-92 345.1 622 40.4
CSS0012259 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 2.6e-92 344.7 622 40.4
Gohir.A03G092980 Gossypium hirsutum HOM05D004562 ORTHO05D005435 1.2e-86 325.9 206 79.1
Gohir.A03G092940 Gossypium hirsutum HOM05D004562 ORTHO05D005435 3.6e-86 324.3 466 45.5
SEGI_31258 Sequoiadendron giganteum HOM05D004562 ORTHO05D005435 3.9e-64 251.1 810 29.3
CBR_g38780 Chara braunii HOM05D004562 ORTHO05D005435 1.4e-61 242.7 221 56.6
Duzib084G0184 Durio zibethinus HOM05D004562 ORTHO05D005435 3.6e-54 218.0 614 32.4
SHI19076 Sapria himalayana HOM05D004562 ORTHO05D005435 8.1e-54 216.9 142 76.1
AUR62044432 Chenopodium quinoa HOM05D004562 ORTHO05D005435 1.3e-51 209.5 697 29.4
CAN.G59.9 Capsicum annuum HOM05D004562 ORTHO05D005435 8.7e-40 170.2 168 58.3
CAN.G1490.14 Capsicum annuum HOM05D004562 ORTHO05D005435 3.6e-38 164.9 92 89.1
SHI19074 Sapria himalayana HOM05D004562 ORTHO05D005435 1.1e-37 163.3 130 63.1
SHI19075 Sapria himalayana HOM05D004562 ORTHO05D005435 1.8e-32 146.0 91 75.8
TAR374G0732 Trochodendron aralioides HOM05D004562 ORTHO05D005435 8.7e-32 143.7 171 45.0
CAN.G1687.2 Capsicum annuum HOM05D004562 ORTHO05D005435 1.6e-30 139.4 159 54.1
MCO11G516 Micromonas commoda HOM05D004562 ORTHO05D005435 3.3e-23 115.2 381 29.1
CAN.G22.26 Capsicum annuum HOM05D001423 ORTHO05D001412 5.1e-16 91.3 67 61.2
C03p70010 Brassica napus HOM05D004562 ORTHO05D005435 3.7e-14 85.1 126 38.1
SHI19073 Sapria himalayana HOM05D004562 ORTHO05D005435 9.0e-13 80.5 329 26.7
C09p22450 Brassica napus HOM05D004562 ORTHO05D005435 2.7e-09 68.9 115 36.5
BolC3t19259H Brassica oleracea HOM05D004562 ORTHO05D005435 6.1e-09 67.8 112 35.7
BolC9t55163H Brassica oleracea HOM05D004562 ORTHO05D005435 3.9e-08 65.1 111 35.1
Cfa024768 Carpinus fangiana HOM05D005225 ORTHO05D124687 7.4e-07 60.8 231 26.0
Cpa.g.sc3.375 Carica papaya HOM05D000419 ORTHO05D000692 4.8e-06 58.2 82 46.3


User provided reference genes

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