Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO478G3224 Papaver somniferum HOM05D002496 ORTHO05D002787 8.2e-58 226.9 116 100.0
PSO384G1583 Papaver somniferum HOM05D002496 ORTHO05D002787 5.7e-35 151.0 137 62.8
PSO339G0705 Papaver somniferum HOM05D002496 ORTHO05D002787 2.4e-33 145.6 140 61.4
MD03G1003600 Malus domestica HOM05D002496 ORTHO05D002787 1.5e-30 136.3 137 54.7
Nitab4.5_0000827g0130 Nicotiana tabacum HOM05D002496 ORTHO05D002787 9.4e-30 133.7 116 62.9
MD11G1003500 Malus domestica HOM05D002496 ORTHO05D002787 1.6e-29 132.9 137 53.3
Peaxi162Scf00738g00312 Petunia axillaris HOM05D002496 ORTHO05D002787 2.7e-29 132.1 127 57.5
Aqoxy1G00475 Aquilegia oxysepala HOM05D002496 ORTHO05D002787 3.6e-29 131.7 137 53.3
Solyc12g100360.1 Solanum lycopersicum HOM05D002496 ORTHO05D002787 6.1e-29 131.0 137 53.3
Sopen12g035030 Solanum pennellii HOM05D002496 ORTHO05D002787 6.1e-29 131.0 137 53.3
HanXRQChr02g0057261 Helianthus annuus HOM05D002496 ORTHO05D002787 8.0e-29 130.6 137 54.0
Gohir.A03G022300 Gossypium hirsutum HOM05D002496 ORTHO05D002787 1.4e-28 129.8 137 51.1
Gohir.D03G146400 Gossypium hirsutum HOM05D002496 ORTHO05D002787 1.4e-28 129.8 137 51.1
Nn7g35861 Nelumbo nucifera HOM05D002496 ORTHO05D002787 1.4e-28 129.8 137 52.6
Gorai.003G153800 Gossypium raimondii HOM05D002496 ORTHO05D002787 2.3e-28 129.0 137 50.4
HanXRQChr13g0405751 Helianthus annuus HOM05D002496 ORTHO05D002787 2.3e-28 129.0 137 52.6
Cfa009562 Carpinus fangiana HOM05D002496 ORTHO05D002787 3.0e-28 128.6 137 52.6
COL.COLO4_05794 Corchorus olitorius HOM05D002496 ORTHO05D002787 3.0e-28 128.6 137 51.1
Duzib168G0200 Durio zibethinus HOM05D002496 ORTHO05D002787 3.0e-28 128.6 137 50.4
TAR623G0218 Trochodendron aralioides HOM05D002496 ORTHO05D002787 3.0e-28 128.6 146 51.4
MSTRG.20937 Avicennia marina HOM05D002496 ORTHO05D002787 3.9e-28 128.3 137 51.1
Thecc.09G199700 Theobroma cacao HOM05D002496 ORTHO05D002787 3.9e-28 128.3 137 50.4
FvH4_3g45741 Fragaria vesca HOM05D002496 ORTHO05D002787 5.2e-28 127.9 137 51.8
Prupe.6G003300 Prunus persica HOM05D002496 ORTHO05D002787 8.8e-28 127.1 137 51.1
ECA233G0145 Erigeron canadensis HOM05D002496 ORTHO05D002787 1.1e-27 126.7 137 53.3
Manes.03G087600 Manihot esculenta HOM05D002496 ORTHO05D002787 1.1e-27 126.7 137 51.8
RcHm_v2.0_Chr5g0083811 Rosa chinensis HOM05D002496 ORTHO05D002787 1.1e-27 126.7 137 51.1
Lj2A763T47 Lonicera japonica HOM05D002496 ORTHO05D002787 2.6e-27 125.6 137 49.6
TAR369G0007 Trochodendron aralioides HOM05D002496 ORTHO05D002787 3.3e-27 125.2 154 48.7
GSVIVG01025470001 Vitis vinifera HOM05D002496 ORTHO05D002787 3.3e-27 125.2 137 51.1
Migut.D02566 Erythranthe guttata HOM05D002496 ORTHO05D002787 5.7e-27 124.4 83 71.1
Migut.D02589 Erythranthe guttata HOM05D002496 ORTHO05D002787 5.7e-27 124.4 83 71.1
Oeu023952.2 Olea europaea HOM05D002496 ORTHO05D002787 7.4e-27 124.0 83 71.1
Ciclev10014012m.g Citrus clementina HOM05D002496 ORTHO05D002787 9.7e-27 123.6 137 50.4
Lsat_1_v5_gn_6_53141 Lactuca sativa HOM05D002496 ORTHO05D002787 9.7e-27 123.6 144 51.4
Sabra01G0002600 Salix brachista HOM05D002496 ORTHO05D002787 9.7e-27 123.6 135 51.1
CiPaw.13G177100 Carya illinoinensis HOM05D002496 ORTHO05D002787 1.3e-26 123.2 137 49.6
arahy.Tifrunner.gnm1.ann1.3G7H7K Arachis hypogaea HOM05D002496 ORTHO05D002787 1.7e-26 122.9 137 50.4
arahy.Tifrunner.gnm1.ann1.P751E4 Arachis hypogaea HOM05D002496 ORTHO05D002787 1.7e-26 122.9 137 50.4
PGR119G1355 Punica granatum HOM05D002496 ORTHO05D002787 1.7e-26 122.9 135 53.3
BcaC08g43619 Brassica carinata HOM05D002496 ORTHO05D002787 2.2e-26 122.5 137 49.6
A06p00230 Brassica napus HOM05D002496 ORTHO05D002787 2.2e-26 122.5 137 49.6
C06p10330 Brassica napus HOM05D002496 ORTHO05D002787 2.2e-26 122.5 137 49.6
BolC6t36109H Brassica oleracea HOM05D002496 ORTHO05D002787 2.2e-26 122.5 137 49.6
Thhalv10011175m.g Eutrema salsugineum HOM05D002496 ORTHO05D002787 2.2e-26 122.5 137 49.6
AL1G63400 Arabidopsis lyrata HOM05D002496 ORTHO05D002787 2.8e-26 122.1 137 49.6
AT1G55350 Arabidopsis thaliana HOM05D002496 ORTHO05D002787 2.8e-26 122.1 137 49.6
Carub.0001s4386 Capsella rubella HOM05D002496 ORTHO05D002787 2.8e-26 122.1 137 49.6
Cpa.g.sc119.40 Carica papaya HOM05D002496 ORTHO05D002787 2.8e-26 122.1 137 48.9
Oeu023700.1 Olea europaea HOM05D002496 ORTHO05D002787 2.8e-26 122.1 136 50.0
Lj4g0028195 Lotus japonicus HOM05D002496 ORTHO05D002787 3.7e-26 121.7 137 49.6
Sp1g41030 Schrenkiella parvula HOM05D002496 ORTHO05D002787 3.7e-26 121.7 137 49.6
Actinidia30436 Actinidia chinensis HOM05D002496 ORTHO05D002787 6.3e-26 120.9 137 49.6
BcaB04g16962 Brassica carinata HOM05D002496 ORTHO05D002787 6.3e-26 120.9 137 49.6
CARHR045010 Cardamine hirsuta HOM05D002496 ORTHO05D002787 6.3e-26 120.9 137 48.9
MELO3C015577.2 Cucumis melo HOM05D002496 ORTHO05D002787 8.2e-26 120.6 140 48.6
CsaV3_1G041650 Cucumis sativus L. HOM05D002496 ORTHO05D002787 8.2e-26 120.6 140 48.6
Glyma.08G125500 Glycine max HOM05D002496 ORTHO05D002787 8.2e-26 120.6 137 50.4
Cc01_g00070 Coffea canephora HOM05D002496 ORTHO05D002787 1.1e-25 120.2 145 47.6
Potri.001G003900 Populus trichocarpa HOM05D002496 ORTHO05D002787 1.1e-25 120.2 135 49.6
Psat7g064160 Pisum sativum HOM05D002496 ORTHO05D002787 1.4e-25 119.8 137 49.6
TPR.G6803 Trifolium pratense HOM05D002496 ORTHO05D002787 1.4e-25 119.8 137 49.6
Dinv13473 Davidia involucrata HOM05D002496 ORTHO05D002787 1.8e-25 119.4 147 48.3
Actinidia39346 Actinidia chinensis HOM05D002496 ORTHO05D002787 2.4e-25 119.0 137 48.9
BraA06t23239Z Brassica rapa HOM05D002496 ORTHO05D002787 2.4e-25 119.0 137 48.9
Lalb_Chr13g0295581 Lupinus albus HOM05D002496 ORTHO05D002787 2.4e-25 119.0 137 52.6
Sabra03G0164600 Salix brachista HOM05D002496 ORTHO05D002787 4.1e-25 118.2 135 49.6
CANSAT11G2110 Cannabis sativa HOM05D002496 ORTHO05D002787 5.3e-25 117.9 135 50.4
Medtr8g088520 Medicago truncatula HOM05D002496 ORTHO05D002787 5.3e-25 117.9 137 48.9
Sed0022657 Sechium edule HOM05D002496 ORTHO05D002787 5.3e-25 117.9 140 47.1
FAN25G0679 Fragaria x ananassa HOM05D002496 ORTHO05D002787 7.0e-25 117.5 149 47.0
THA.LOC104822681 Tarenaya hassleriana HOM05D002496 ORTHO05D002787 7.0e-25 117.5 135 48.1
Ca_17842_v3 Cicer arietinum L. HOM05D002496 ORTHO05D002787 9.1e-25 117.1 137 48.9
Phvul.002G247600 Phaseolus vulgaris HOM05D002496 ORTHO05D002787 9.1e-25 117.1 83 68.7
HPP92_024699 Vanilla planifolia HOM05D002496 ORTHO05D002787 9.1e-25 117.1 137 48.2
VMungo0251G3571 Vigna mungo HOM05D002496 ORTHO05D002787 9.1e-25 117.1 83 68.7
Glyma.05G167200 Glycine max HOM05D002496 ORTHO05D002787 1.2e-24 116.7 83 68.7
vmacro12599 Vaccinium macrocarpon HOM05D002496 ORTHO05D002787 1.2e-24 116.7 146 46.6
Dinv11478 Davidia involucrata HOM05D002496 ORTHO05D002787 1.6e-24 116.3 145 47.6
MBI01_g25638_MAGBIO Magnolia biondii HOM05D002496 ORTHO05D002787 1.6e-24 116.3 151 47.0
QL01p003675 Quercus lobata HOM05D002496 ORTHO05D002787 1.6e-24 116.3 145 46.9
SalBow2G0058 Salvia bowleyana HOM05D002496 ORTHO05D002787 1.6e-24 116.3 153 45.8
Eucgr.J01766 Eucalyptus grandis HOM05D002496 ORTHO05D002787 2.0e-24 115.9 137 46.0
Potri.003G221100 Populus trichocarpa HOM05D002496 ORTHO05D002787 2.0e-24 115.9 135 48.9
Sc16g0012220 Simmondsia chinensis HOM05D002496 ORTHO05D002787 2.0e-24 115.9 137 46.7
TWI34G0193 Tripterygium wilfordii HOM05D002496 ORTHO05D002787 2.6e-24 115.5 137 46.7
ATR0827G153 Amborella trichopoda HOM05D002496 ORTHO05D002787 3.5e-24 115.2 83 66.3
Sed0000966 Sechium edule HOM05D002496 ORTHO05D002787 5.9e-24 114.4 140 46.4
THA.LOC104810325 Tarenaya hassleriana HOM05D002496 ORTHO05D002787 7.7e-24 114.0 137 46.0
DCAR_029934 Daucus carota HOM05D002496 ORTHO05D002787 2.9e-23 112.1 137 48.2
FAN16G0954 Fragaria x ananassa HOM05D002496 ORTHO05D002787 3.8e-23 111.7 168 42.3
Os02g0709400 Oryza sativa ssp. japonica HOM05D002496 ORTHO05D002787 3.2e-22 108.6 81 63.0
CSS0046180 Camellia sinensis var. sinensis HOM05D002496 ORTHO05D002787 7.2e-22 107.5 137 46.7
Zm00001eb014030 Zea mays HOM05D002496 ORTHO05D002787 1.6e-21 106.3 81 63.0
ClCG03G014540 Citrullus lanatus HOM05D002496 ORTHO05D002787 2.7e-21 105.5 140 45.0
CAN.G1703.3 Capsicum annuum HOM05D002496 ORTHO05D002787 3.6e-21 105.1 121 49.6
CAN.G1703.18 Capsicum annuum HOM05D002496 ORTHO05D002787 4.7e-21 104.8 121 49.6
SEGI_17528 Sequoiadendron giganteum HOM05D002496 ORTHO05D002787 4.7e-21 104.8 137 50.4
Aa31LG10G1150 Aethionema arabicum HOM05D002496 ORTHO05D002787 6.1e-21 104.4 173 38.7
Rhsim01G0184300 Rhododendron simsii HOM05D002496 ORTHO05D002787 1.0e-20 103.6 137 43.8
CAN.G309.110 Capsicum annuum HOM05D002496 ORTHO05D002787 5.2e-20 101.3 95 58.9
CAN.G1751.12 Capsicum annuum HOM05D002496 ORTHO05D002787 1.2e-19 100.1 134 44.0
CAN.G309.99 Capsicum annuum HOM05D002496 ORTHO05D002787 1.5e-19 99.8 117 49.6
CAN.G575.112 Capsicum annuum HOM05D002496 ORTHO05D002787 2.0e-19 99.4 67 71.6
CAN.G134.157 Capsicum annuum HOM05D002496 ORTHO05D002787 3.4e-19 98.6 88 60.2
Pp3c17_17550 Physcomitrium patens HOM05D002496 ORTHO05D002787 7.5e-19 97.4 115 44.3
SMO332G0020 Selaginella moellendorffii HOM05D002496 ORTHO05D002787 7.5e-19 97.4 137 41.6
CAN.G1579.7 Capsicum annuum HOM05D002496 ORTHO05D002787 1.7e-18 96.3 114 50.9
CAN.G575.132 Capsicum annuum HOM05D002496 ORTHO05D002787 2.8e-18 95.5 127 46.5
Mapoly0026s0090 Marchantia polymorpha HOM05D002496 ORTHO05D002787 4.8e-18 94.7 83 53.0
AagrBONN_evm.TU.Sc2ySwM_344.939 Anthoceros agrestis HOM05D002496 ORTHO05D002787 3.1e-17 92.0 95 49.5
Mapoly0026s0110 Marchantia polymorpha HOM05D002496 ORTHO05D002787 9.1e-17 90.5 83 53.0
CAN.G309.134 Capsicum annuum HOM05D002496 ORTHO05D002787 1.6e-16 89.7 117 47.0
AUR62040902 Chenopodium quinoa HOM05D002496 ORTHO05D002787 2.7e-16 89.0 137 40.1
CAN.G1783.2 Capsicum annuum HOM05D002496 ORTHO05D002787 3.8e-15 85.1 130 44.6
SMO334G0130 Selaginella moellendorffii HOM05D002496 ORTHO05D002787 3.8e-15 85.1 130 41.5
CAN.G4338.1 Capsicum annuum HOM05D002496 ORTHO05D002787 1.1e-14 83.6 111 46.8
Psat0s11647g0040 Pisum sativum HOM05D002496 ORTHO05D002787 7.2e-14 80.9 104 42.3
SHI31316 Sapria himalayana HOM05D002496 ORTHO05D002787 1.2e-13 80.1 60 66.7
arahy.Tifrunner.gnm1.ann1.WZQ8WP Arachis hypogaea HOM05D002496 ORTHO05D002787 2.7e-13 79.0 96 45.8
AUR62019163 Chenopodium quinoa HOM05D002496 ORTHO05D002787 1.4e-12 76.6 86 53.5
C03p92660 Brassica napus HOM05D002496 ORTHO05D002787 3.0e-12 75.5 137 37.2
Psat3g144720 Pisum sativum HOM05D002496 ORTHO05D002787 3.4e-11 72.0 141 41.8
CAN.G309.100 Capsicum annuum HOM05D002496 ORTHO05D002787 8.3e-10 67.4 45 75.6
CDE02G0627 Ceratophyllum demersum HOM05D002496 ORTHO05D002787 1.1e-09 67.0 94 39.4
CAN.G309.141 Capsicum annuum HOM05D002518 ORTHO05D002630 2.4e-09 65.9 44 75.0
CAN.G309.143 Capsicum annuum HOM05D002496 ORTHO05D002630 1.6e-08 63.2 41 78.0
CAN.G134.139 Capsicum annuum HOM05D002496 ORTHO05D002787 2.7e-08 62.4 82 50.0
Lsat_1_v5_gn_7_65640 Lactuca sativa HOM05D002496 ORTHO05D002787 1.3e-07 60.1 70 51.4
CBR_g23691 Chara braunii HOM05D001190 ORTHO05D001764 5.5e-06 54.7 85 42.4
Atru.chr3.2106 Acer truncatum HOM05D002496 ORTHO05D002787 7.2e-06 54.3 116 35.3


User provided reference genes

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