Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO478G3191 Papaver somniferum HOM05D004672 ORTHO05D005732 0.0e+00 2432.9 1366 100.0
PSO017G1610 Papaver somniferum HOM05D004672 ORTHO05D005732 0.0e+00 2112.4 1295 92.9
CSS0000676 Camellia sinensis var. sinensis HOM05D004672 ORTHO05D005732 0.0e+00 1393.6 1229 61.7
Aqoxy6G00637 Aquilegia oxysepala HOM05D004672 ORTHO05D005732 0.0e+00 1379.4 1265 60.6
Actinidia02411 Actinidia chinensis HOM05D004672 ORTHO05D005732 0.0e+00 1364.0 1231 61.1
TAR628G0793 Trochodendron aralioides HOM05D004672 ORTHO05D005732 0.0e+00 1361.3 1255 60.2
Nn1g07286 Nelumbo nucifera HOM05D004672 ORTHO05D005732 0.0e+00 1360.9 1255 59.3
Ciclev10027696m.g Citrus clementina HOM05D004672 ORTHO05D005732 0.0e+00 1353.6 1229 61.9
Manes.10G094200 Manihot esculenta HOM05D004672 ORTHO05D005732 0.0e+00 1335.1 1258 58.7
CSS0013617 Camellia sinensis var. sinensis HOM05D004672 ORTHO05D005732 0.0e+00 1333.9 1257 59.4
Thecc.02G125000 Theobroma cacao HOM05D004672 ORTHO05D005732 0.0e+00 1333.5 1261 59.0
Lj9C342T12 Lonicera japonica HOM05D004672 ORTHO05D005732 0.0e+00 1330.9 1257 59.3
Duzib132G0551 Durio zibethinus HOM05D004672 ORTHO05D005732 0.0e+00 1327.0 1244 58.5
MD10G1056900 Malus domestica HOM05D004672 ORTHO05D005732 0.0e+00 1325.5 1230 58.5
FvH4_2g11160 Fragaria vesca HOM05D004672 ORTHO05D005732 0.0e+00 1317.4 1212 58.4
vmacro19391 Vaccinium macrocarpon HOM05D004672 ORTHO05D005732 0.0e+00 1313.5 1238 59.5
RcHm_v2.0_Chr6g0269481 Rosa chinensis HOM05D004672 ORTHO05D005732 0.0e+00 1306.6 1183 58.7
Prupe.8G075100 Prunus persica HOM05D004672 ORTHO05D005732 0.0e+00 1306.2 1256 57.2
MD05G1049800 Malus domestica HOM05D004672 ORTHO05D005732 0.0e+00 1303.5 1215 58.4
MSTRG.16633 Avicennia marina HOM05D004672 ORTHO05D005732 0.0e+00 1302.7 1238 56.6
CANSAT54G0310 Cannabis sativa HOM05D004672 ORTHO05D005732 0.0e+00 1301.6 1222 58.8
Potri.009G079900 Populus trichocarpa HOM05D004672 ORTHO05D005732 0.0e+00 1300.4 1277 56.9
Potri.001G285600 Populus trichocarpa HOM05D004672 ORTHO05D005732 0.0e+00 1297.7 1239 59.9
Sed0014665 Sechium edule HOM05D004672 ORTHO05D005732 0.0e+00 1297.7 1263 57.0
CiPaw.06G160900 Carya illinoinensis HOM05D004672 ORTHO05D005732 0.0e+00 1292.7 1284 55.8
GSVIVG01038520001 Vitis vinifera HOM05D004672 ORTHO05D005732 0.0e+00 1292.7 1236 59.6
Gohir.D13G048000 Gossypium hirsutum HOM05D004672 ORTHO05D005732 0.0e+00 1286.2 1261 56.5
ClCG09G016480 Citrullus lanatus HOM05D004672 ORTHO05D005732 0.0e+00 1283.1 1245 57.7
Eucgr.I02582 Eucalyptus grandis HOM05D004672 ORTHO05D005732 0.0e+00 1283.1 1246 57.7
MBI16_g10454_MAGBIO Magnolia biondii HOM05D004672 ORTHO05D005732 0.0e+00 1283.1 1279 59.1
Cfa004803 Carpinus fangiana HOM05D004672 ORTHO05D005732 0.0e+00 1281.5 1282 57.0
DCAR_021895 Daucus carota HOM05D004672 ORTHO05D005732 0.0e+00 1279.6 1255 56.5
Gorai.013G053600 Gossypium raimondii HOM05D004672 ORTHO05D005732 0.0e+00 1278.1 1261 56.6
FAN24G1132 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 1273.5 1212 57.0
Cc02_g20590 Coffea canephora HOM05D004672 ORTHO05D005732 0.0e+00 1273.1 1269 56.0
Gohir.A13G049500 Gossypium hirsutum HOM05D004672 ORTHO05D005732 0.0e+00 1272.7 1254 56.9
Glyma.13G254600 Glycine max HOM05D004672 ORTHO05D005732 0.0e+00 1270.4 1225 56.5
FAN15G2368 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 1269.6 1238 56.5
Sed0001753 Sechium edule HOM05D004672 ORTHO05D005732 0.0e+00 1268.4 1245 56.1
TWI59G0488 Tripterygium wilfordii HOM05D004672 ORTHO05D005732 0.0e+00 1268.4 1195 56.9
QL11p026607 Quercus lobata HOM05D004672 ORTHO05D005732 0.0e+00 1267.3 1321 55.5
Lalb_Chr18g0060301 Lupinus albus HOM05D004672 ORTHO05D005732 0.0e+00 1266.5 1242 56.6
Hund06479 Selenicereus undatus HOM05D004672 ORTHO05D005732 0.0e+00 1266.1 1237 55.1
Hma1.2p1_0908F.1_g235670 Hydrangea macrophylla HOM05D004672 ORTHO05D005732 0.0e+00 1265.8 1289 55.6
Sabra09G0061900 Salix brachista HOM05D004672 ORTHO05D005732 0.0e+00 1264.2 1240 57.7
FAN20G2876 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 1261.5 1212 57.4
FAN27G2619 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 1258.0 1211 58.1
arahy.Tifrunner.gnm1.ann1.BVLY6P Arachis hypogaea HOM05D004672 ORTHO05D005732 0.0e+00 1252.7 1263 57.2
AUR62027080 Chenopodium quinoa HOM05D004672 ORTHO05D005732 0.0e+00 1250.3 1250 56.8
Sabra16G0178000 Salix brachista HOM05D004672 ORTHO05D005732 0.0e+00 1248.8 1284 57.4
Phvul.006G199700 Phaseolus vulgaris HOM05D004672 ORTHO05D005732 0.0e+00 1247.6 1248 54.8
EL10Ac9g22127 Beta vulgaris HOM05D004672 ORTHO05D005732 0.0e+00 1246.5 1249 56.8
Medtr2g010110 Medicago truncatula HOM05D004672 ORTHO05D005732 0.0e+00 1245.7 1251 55.6
Psat1g212840 Pisum sativum HOM05D004672 ORTHO05D005732 0.0e+00 1243.4 1242 54.6
Glyma.15G060100 Glycine max HOM05D004672 ORTHO05D005732 0.0e+00 1243.0 1203 56.6
arahy.Tifrunner.gnm1.ann1.GE1IDC Arachis hypogaea HOM05D004672 ORTHO05D005732 0.0e+00 1242.3 1250 58.2
Lj6g0005540 Lotus japonicus HOM05D004672 ORTHO05D005732 0.0e+00 1242.3 1257 56.5
MELO3C018559.2 Cucumis melo HOM05D004672 ORTHO05D005732 0.0e+00 1240.3 1252 57.1
VMungo0540G1852 Vigna mungo HOM05D004672 ORTHO05D005732 0.0e+00 1237.6 1249 54.7
AUR62030919 Chenopodium quinoa HOM05D004672 ORTHO05D005732 0.0e+00 1236.5 1250 56.6
CsaV3_7G007430 Cucumis sativus L. HOM05D004672 ORTHO05D005732 0.0e+00 1236.5 1261 54.9
Ca_00181_v3 Cicer arietinum L. HOM05D004672 ORTHO05D005732 0.0e+00 1233.4 1213 55.5
HanXRQChr03g0071051 Helianthus annuus HOM05D004672 ORTHO05D005732 0.0e+00 1229.5 1231 55.6
PGR142G1680 Punica granatum HOM05D004672 ORTHO05D005732 0.0e+00 1221.5 1216 57.3
ECA240G2418 Erigeron canadensis HOM05D004672 ORTHO05D005732 0.0e+00 1218.4 1220 56.6
SGA_v2.0_scaffold83G26394 Striga asiatica HOM05D004672 ORTHO05D005732 0.0e+00 1213.4 1198 56.2
Haze_10395 Corylus avellana HOM05D004672 ORTHO05D005732 0.0e+00 1210.3 1317 53.5
Nitab4.5_0002335g0010 Nicotiana tabacum HOM05D004672 ORTHO05D005732 0.0e+00 1207.6 1253 54.7
CAN.G504.43 Capsicum annuum HOM05D004672 ORTHO05D005732 0.0e+00 1205.3 1263 52.5
Migut.B00522 Erythranthe guttata HOM05D004672 ORTHO05D005732 0.0e+00 1203.0 1252 54.4
SalBow6G5524 Salvia bowleyana HOM05D004672 ORTHO05D005732 0.0e+00 1200.7 1254 54.1
THA.LOC104799703 Tarenaya hassleriana HOM05D004672 ORTHO05D005732 0.0e+00 1194.9 1190 55.3
Nitab4.5_0005163g0020 Nicotiana tabacum HOM05D004672 ORTHO05D005732 0.0e+00 1190.3 1247 54.4
Oeu042393.4 Olea europaea HOM05D004672 ORTHO05D005732 0.0e+00 1189.1 1251 53.3
Carub.0008s2522 Capsella rubella HOM05D004672 ORTHO05D005732 0.0e+00 1187.9 1267 53.4
Sopen01g048630 Solanum pennellii HOM05D004672 ORTHO05D005732 0.0e+00 1184.5 1255 53.3
Solyc01g106220.4 Solanum lycopersicum HOM05D004672 ORTHO05D005732 0.0e+00 1182.2 1255 53.5
Sp2g27510 Schrenkiella parvula HOM05D004672 ORTHO05D005732 0.0e+00 1175.6 1204 55.8
Lsat_1_v5_gn_9_113661 Lactuca sativa HOM05D004672 ORTHO05D005732 0.0e+00 1175.2 1236 53.6
Lsat_1_v5_gn_9_113760 Lactuca sativa HOM05D004672 ORTHO05D005732 0.0e+00 1174.1 1236 53.6
Aa31LG1G17480 Aethionema arabicum HOM05D004672 ORTHO05D005732 0.0e+00 1166.0 1275 53.6
C03p61860 Brassica napus HOM05D004672 ORTHO05D005732 0.0e+00 1154.0 1199 55.0
BolC3t18446H Brassica oleracea HOM05D004672 ORTHO05D005732 0.0e+00 1154.0 1199 55.0
Thhalv10003522m.g Eutrema salsugineum HOM05D004672 ORTHO05D005732 0.0e+00 1153.7 1198 54.3
BraA06t26051Z Brassica rapa HOM05D004672 ORTHO05D005732 0.0e+00 1146.0 1219 54.6
AT5G64420 Arabidopsis thaliana HOM05D004672 ORTHO05D005732 0.0e+00 1143.6 1287 52.2
CARHR278390 Cardamine hirsuta HOM05D004672 ORTHO05D005732 0.0e+00 1142.1 1198 54.6
A06p31080 Brassica napus HOM05D004672 ORTHO05D005732 0.0e+00 1140.6 1203 54.8
Oeu033795.2 Olea europaea HOM05D004672 ORTHO05D005732 0.0e+00 1140.2 1287 50.4
AL8G41790 Arabidopsis lyrata HOM05D004672 ORTHO05D005732 0.0e+00 1132.1 1226 53.0
PGSC0003DMG400010676 Solanum tuberosum HOM05D004672 ORTHO05D005732 0.0e+00 1132.1 1243 52.8
THA.LOC104818461 Tarenaya hassleriana HOM05D004672 ORTHO05D005732 0.0e+00 1117.1 1307 49.6
HPP92_024099 Vanilla planifolia HOM05D004672 ORTHO05D005732 0.0e+00 1087.4 1290 48.6
Sc06g0005830 Simmondsia chinensis HOM05D004672 ORTHO05D005732 0.0e+00 1077.8 1077 55.3
CDE05G2025 Ceratophyllum demersum HOM05D004672 ORTHO05D005732 4.2e-310 1068.5 1225 50.1
TPR.G32637 Trifolium pratense HOM05D004672 ORTHO05D005732 5.6e-310 1068.1 1285 48.6
Peaxi162Scf00016g03257 Petunia axillaris HOM05D004672 ORTHO05D005732 4.4e-307 1058.5 1246 48.6
Duzib132G1253 Durio zibethinus HOM05D004672 ORTHO05D005732 2.0e-304 1049.7 1218 51.1
ATR0800G038 Amborella trichopoda HOM05D004672 ORTHO05D005732 5.4e-297 1025.0 1265 49.0
Ah.01g024170 Amaranthus hybridus HOM05D004672 ORTHO05D005732 1.6e-293 1013.4 1080 56.7
Peaxi162Scf00016g03462 Petunia axillaris HOM05D004672 ORTHO05D005732 4.9e-290 1001.9 1256 47.0
Nitab4.5_0005163g0030 Nicotiana tabacum HOM05D004672 ORTHO05D005732 6.4e-290 1001.5 1254 47.4
Os02g0135700 Oryza sativa ssp. japonica HOM05D004672 ORTHO05D005732 1.4e-289 1000.3 1244 48.4
unitig_744.g24197 Utricularia gibba HOM05D004672 ORTHO05D005732 1.9e-286 989.9 1255 45.7
Zm00001eb231630 Zea mays HOM05D004672 ORTHO05D005732 1.2e-277 960.7 1228 47.1
SHI04921 Sapria himalayana HOM05D004672 ORTHO05D005732 6.9e-276 954.9 1212 44.1
Actinidia00323 Actinidia chinensis HOM05D004672 ORTHO05D005732 5.4e-273 945.3 949 56.9
Dinv08968 Davidia involucrata HOM05D004672 ORTHO05D005732 1.3e-263 914.1 763 63.8
Atru.chr6.1353 Acer truncatum HOM05D004672 ORTHO05D005732 5.7e-222 775.8 663 62.1
SEGI_31749 Sequoiadendron giganteum HOM05D004672 ORTHO05D005732 2.0e-214 750.7 1111 41.5
Cpa.g.sc20.40 Carica papaya HOM05D004672 ORTHO05D005732 2.9e-181 640.6 1262 36.9
Dinv16031 Davidia involucrata HOM05D004672 ORTHO05D005732 6.2e-152 543.1 443 62.1
AagrBONN_evm.TU.Sc2ySwM_368.3324__3325 Anthoceros agrestis HOM05D004672 ORTHO05D005732 4.2e-148 530.4 1211 33.0
AagrBONN_evm.TU.Sc2ySwM_228.3115__3116 Anthoceros agrestis HOM05D004672 ORTHO05D005732 3.0e-146 524.2 1261 32.4
Pp3c3_9940 Physcomitrium patens HOM05D004672 ORTHO05D005732 9.6e-145 519.2 1235 34.0
Pp3c13_11570 Physcomitrium patens HOM05D004672 ORTHO05D005732 4.8e-144 516.9 1246 33.3
Atru.chr6.1354 Acer truncatum HOM05D004672 ORTHO05D005732 2.0e-142 511.5 533 58.5
BcaB07g29742 Brassica carinata HOM05D004672 ORTHO05D005732 5.1e-138 496.9 684 48.1
vmacro06228 Vaccinium macrocarpon HOM05D004672 ORTHO05D005732 8.7e-138 496.1 885 42.3
Dinv08967 Davidia involucrata HOM05D004672 ORTHO05D005732 2.5e-129 468.0 449 57.0
Dinv16032 Davidia involucrata HOM05D004672 ORTHO05D005732 2.5e-124 451.4 436 58.7
BcaC03g18261 Brassica carinata HOM05D004672 ORTHO05D005732 3.2e-124 451.1 619 43.8
SMO358G0564 Selaginella moellendorffii HOM05D004672 ORTHO05D005732 8.2e-120 436.4 1241 29.6
Mapoly0136s0021 Marchantia polymorpha HOM05D004672 ORTHO05D005732 2.5e-116 424.9 1285 29.6
CBR_g52045 Chara braunii HOM05D004672 ORTHO05D005732 9.1e-95 353.2 1300 26.8
C02p63340 Brassica napus HOM05D004672 ORTHO05D005732 1.3e-85 322.8 1052 29.7
BolC2t12404H Brassica oleracea HOM05D004672 ORTHO05D005732 8.6e-77 293.5 1047 28.4
Gorai.005G227500 Gossypium raimondii HOM05D004672 ORTHO05D005732 1.9e-68 265.8 522 36.6
Gohir.D02G202550 Gossypium hirsutum HOM05D004672 ORTHO05D005732 9.5e-68 263.5 517 36.4
AL8G35270 Arabidopsis lyrata HOM05D004672 ORTHO05D005732 3.1e-66 258.5 239 59.0
BcaC03g18262 Brassica carinata HOM05D004672 ORTHO05D005732 4.3e-60 238.0 325 45.8
MCO10G087 Micromonas commoda HOM05D004672 ORTHO05D005732 3.3e-44 185.3 1183 24.5
Nitab4.5_0001405g0010 Nicotiana tabacum HOM05D004672 ORTHO05D005732 1.3e-43 183.3 217 46.5
Cre01.g012350 Chlamydomonas reinhardtii HOM05D004672 ORTHO05D005732 1.3e-35 156.8 1112 25.5
Nitab4.5_0003026g0050 Nicotiana tabacum HOM05D004672 ORTHO05D005732 4.6e-30 138.3 96 68.8
Nitab4.5_0001405g0020 Nicotiana tabacum HOM05D004672 ORTHO05D005732 1.1e-23 117.1 129 46.5
Psat5g050320 Pisum sativum HOM05D004672 ORTHO05D005732 1.1e-23 117.1 92 64.1
Manes.10G093300 Manihot esculenta HOM05D004672 ORTHO05D005732 4.3e-20 105.1 144 45.8
VMungo0540G1591 Vigna mungo HOM05D003578 ORTHO05D004021 1.2e-17 97.1 90 58.9
RcHm_v2.0_Chr1g0357401 Rosa chinensis HOM05D004672 ORTHO05D346782 8.5e-16 90.9 185 33.5
Nitab4.5_0001405g0040 Nicotiana tabacum HOM05D004672 ORTHO05D005732 9.3e-15 87.4 130 42.3
Nn8g41203 Nelumbo nucifera HOM05D004672 ORTHO05D005732 4.6e-14 85.1 71 54.9
C02p63360 Brassica napus HOM05D004672 ORTHO05D005732 6.1e-14 84.7 139 34.5
Nn2g13574 Nelumbo nucifera HOM05D004672 ORTHO05D005732 1.3e-13 83.6 61 67.2
Zm00001eb156660 Zea mays HOM05D004672 ORTHO05D005732 5.1e-13 81.6 97 41.2
Medtr2g086320 Medicago truncatula HOM05D004672 ORTHO05D005732 1.5e-12 80.1 112 43.8
Solyc01g106270.1 Solanum lycopersicum HOM05D004672 ORTHO05D005732 8.2e-11 74.3 198 32.8
Psat0s7528g0040 Pisum sativum HOM05D003881 ORTHO05D004343 4.1e-10 72.0 53 67.9
Psat1g034120 Pisum sativum HOM05D003881 ORTHO05D004343 4.1e-10 72.0 53 67.9
Lsat_1_v5_gn_8_42860 Lactuca sativa HOM05D004672 ORTHO05D005732 1.2e-09 70.5 77 50.6
Cfa025397 Carpinus fangiana HOM05D004672 ORTHO05D126383 7.9e-06 57.8 513 21.2


User provided reference genes

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