Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO384G1132 Papaver somniferum HOM05D004545 ORTHO05D005420 1.5e-164 582.8 296 100.0
PSO384G1091 Papaver somniferum HOM05D004545 ORTHO05D005420 7.4e-164 580.5 296 99.7
PSO339G5690 Papaver somniferum HOM05D004545 ORTHO05D005420 2.6e-156 555.4 296 94.9
PSO384G3673 Papaver somniferum HOM05D004545 ORTHO05D005420 2.2e-155 552.4 296 94.3
PSO339G1796 Papaver somniferum HOM05D004545 ORTHO05D005420 3.7e-155 551.6 296 95.3
Cpa.g.sc132.18 Carica papaya HOM05D004545 ORTHO05D005420 1.6e-126 456.4 300 77.7
Thecc.01G181500 Theobroma cacao HOM05D004545 ORTHO05D005420 1.6e-126 456.4 300 76.7
Haze_12771 Corylus avellana HOM05D004545 ORTHO05D005420 3.6e-126 455.3 300 76.7
TAR626G1663 Trochodendron aralioides HOM05D004545 ORTHO05D005420 4.7e-126 454.9 301 77.7
COL.COLO4_21869 Corchorus olitorius HOM05D004545 ORTHO05D005420 3.0e-125 452.2 300 76.0
Hma1.2p1_0177F.1_g078020 Hydrangea macrophylla HOM05D004545 ORTHO05D005420 2.0e-124 449.5 300 75.7
Duzib133G1216 Durio zibethinus HOM05D004545 ORTHO05D005420 3.4e-124 448.7 298 76.2
QL08p030801 Quercus lobata HOM05D004545 ORTHO05D005420 5.7e-124 448.0 300 75.7
Manes.13G066400 Manihot esculenta HOM05D004545 ORTHO05D005420 3.7e-123 445.3 300 75.3
Prupe.3G211000 Prunus persica HOM05D004545 ORTHO05D005420 1.8e-122 443.0 294 76.9
Manes.12G070000 Manihot esculenta HOM05D004545 ORTHO05D005420 2.4e-122 442.6 302 75.2
MELO3C019739.2 Cucumis melo HOM05D004545 ORTHO05D005420 3.2e-122 442.2 300 74.7
CiPaw.03G155600 Carya illinoinensis HOM05D004545 ORTHO05D005420 4.1e-122 441.8 295 75.6
Actinidia10802 Actinidia chinensis HOM05D004545 ORTHO05D005420 9.2e-122 440.7 295 76.6
CANSAT64G0134 Cannabis sativa HOM05D004545 ORTHO05D005420 9.2e-122 440.7 297 74.7
CsaV3_6G015340 Cucumis sativus L. HOM05D004545 ORTHO05D005420 3.5e-121 438.7 300 74.3
MD17G1103700 Malus domestica HOM05D004545 ORTHO05D005420 5.9e-121 438.0 294 75.5
TWI18G1088 Tripterygium wilfordii HOM05D004545 ORTHO05D005420 7.8e-121 437.6 300 76.0
MD09G1113600 Malus domestica HOM05D004545 ORTHO05D005420 1.1e-119 433.7 294 75.2
TWI36G1393 Tripterygium wilfordii HOM05D004545 ORTHO05D005420 2.5e-119 432.6 300 75.0
GSVIVG01030499001 Vitis vinifera HOM05D004545 ORTHO05D005420 2.5e-119 432.6 293 75.8
ClCG02G018050 Citrullus lanatus HOM05D004545 ORTHO05D005420 4.3e-119 431.8 310 71.9
Gohir.D07G193600 Gossypium hirsutum HOM05D004545 ORTHO05D005420 2.8e-118 429.1 301 73.1
CSS0044911 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 3.6e-118 428.7 295 76.3
Gohir.A07G187100 Gossypium hirsutum HOM05D004545 ORTHO05D005420 1.4e-117 426.8 301 72.8
vmacro12662 Vaccinium macrocarpon HOM05D004545 ORTHO05D005420 1.4e-117 426.8 298 75.8
CSS0041882 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 2.3e-117 426.0 295 76.3
Gorai.001G216700 Gossypium raimondii HOM05D004545 ORTHO05D005420 3.1e-117 425.6 301 72.4
CiPaw.04G110900 Carya illinoinensis HOM05D004545 ORTHO05D005420 6.8e-117 424.5 300 72.0
Atru.chr6.3251 Acer truncatum HOM05D004545 ORTHO05D005420 8.9e-117 424.1 301 73.1
RcHm_v2.0_Chr2g0158271 Rosa chinensis HOM05D004545 ORTHO05D005420 8.9e-117 424.1 291 73.9
Sed0009821 Sechium edule HOM05D004545 ORTHO05D005420 1.5e-116 423.3 298 74.8
Cc04_g08550 Coffea canephora HOM05D004545 ORTHO05D005420 2.6e-116 422.5 298 74.8
Solyc08g013990.3 Solanum lycopersicum HOM05D004545 ORTHO05D005420 3.4e-116 422.2 288 75.0
Aqoxy2G01628 Aquilegia oxysepala HOM05D004545 ORTHO05D005420 4.4e-116 421.8 300 74.7
FvH4_6g42360 Fragaria vesca HOM05D004545 ORTHO05D005420 1.3e-115 420.2 290 73.4
FAN14G2961 Fragaria x ananassa HOM05D004545 ORTHO05D005420 1.3e-115 420.2 290 73.4
Dinv08724 Davidia involucrata HOM05D004545 ORTHO05D005420 1.7e-115 419.9 292 75.0
PGR142G4169 Punica granatum HOM05D004545 ORTHO05D005420 1.7e-115 419.9 301 72.4
TAR624G0840 Trochodendron aralioides HOM05D004545 ORTHO05D005420 1.7e-115 419.9 298 73.8
FAN05G0363 Fragaria x ananassa HOM05D004545 ORTHO05D005420 3.7e-115 418.7 290 73.1
CAN.G466.2 Capsicum annuum HOM05D004545 ORTHO05D005420 4.9e-115 418.3 290 74.5
Oeu008952.2 Olea europaea HOM05D004545 ORTHO05D005420 1.1e-114 417.2 300 72.3
Ciclev10016078m.g Citrus clementina HOM05D004545 ORTHO05D005420 1.9e-114 416.4 302 72.8
Potri.002G225100 Populus trichocarpa HOM05D004545 ORTHO05D005420 1.9e-114 416.4 300 72.3
Sabra02G0172100 Salix brachista HOM05D004545 ORTHO05D005420 1.9e-114 416.4 295 73.2
FAN02G2244 Fragaria x ananassa HOM05D004545 ORTHO05D005420 2.0e-113 412.9 304 70.4
Potri.014G158000 Populus trichocarpa HOM05D004545 ORTHO05D005420 1.0e-112 410.6 300 72.0
Sed0012432 Sechium edule HOM05D004545 ORTHO05D005420 2.3e-112 409.5 272 75.4
SGA_v2.0_scaffold106G30667 Striga asiatica HOM05D004545 ORTHO05D005420 5.0e-112 408.3 300 69.7
Aqoxy4G01985 Aquilegia oxysepala HOM05D004545 ORTHO05D005420 6.6e-112 407.9 293 72.0
Peaxi162Scf00075g01538 Petunia axillaris HOM05D004545 ORTHO05D005420 1.1e-111 407.1 290 73.1
Sc12g0002080 Simmondsia chinensis HOM05D004545 ORTHO05D005420 4.7e-110 401.7 297 71.4
Nitab4.5_0008425g0010 Nicotiana tabacum HOM05D004545 ORTHO05D005420 1.4e-109 400.2 291 72.2
Nitab4.5_0005035g0030 Nicotiana tabacum HOM05D004545 ORTHO05D005420 1.8e-109 399.8 291 71.8
BcaC01g05879 Brassica carinata HOM05D004545 ORTHO05D005420 2.3e-109 399.4 301 69.4
Eucgr.K00758 Eucalyptus grandis HOM05D004545 ORTHO05D005420 2.3e-109 399.4 296 69.9
MBI15_g08964_MAGBIO Magnolia biondii HOM05D004545 ORTHO05D005420 3.1e-109 399.1 302 70.5
C03p21500 Brassica napus HOM05D004545 ORTHO05D005420 4.0e-109 398.7 301 69.4
A03p18410 Brassica napus HOM05D004545 ORTHO05D005420 6.8e-109 397.9 301 69.1
Aa31LG5G4640 Aethionema arabicum HOM05D004545 ORTHO05D005420 1.2e-108 397.1 293 70.3
Migut.L01518 Erythranthe guttata HOM05D004545 ORTHO05D005420 2.6e-108 396.0 291 70.4
Nitab4.5_0000242g0090 Nicotiana tabacum HOM05D004545 ORTHO05D005420 2.6e-108 396.0 291 71.5
Thhalv10016881m.g Eutrema salsugineum HOM05D004545 ORTHO05D005420 5.8e-108 394.8 294 69.7
Sabra14G0120000 Salix brachista HOM05D004545 ORTHO05D005420 7.5e-108 394.4 299 69.2
CARHR126930 Cardamine hirsuta HOM05D004545 ORTHO05D005420 2.2e-107 392.9 293 69.3
EL10Ac7g17335 Beta vulgaris HOM05D004545 ORTHO05D005420 6.4e-107 391.3 290 69.3
Lsat_1_v5_gn_5_124360 Lactuca sativa HOM05D004545 ORTHO05D005420 1.4e-106 390.2 286 72.0
Ah.01g004130 Amaranthus hybridus HOM05D004545 ORTHO05D005420 1.9e-106 389.8 297 69.0
Glyma.20G151100 Glycine max HOM05D004545 ORTHO05D005420 2.4e-106 389.4 265 74.7
Rhsim04G0050700 Rhododendron simsii HOM05D004545 ORTHO05D005420 5.4e-106 388.3 346 63.0
Sp4g15340 Schrenkiella parvula HOM05D004545 ORTHO05D005420 5.4e-106 388.3 299 68.2
AT2G32980 Arabidopsis thaliana HOM05D004545 ORTHO05D005420 9.2e-106 387.5 295 68.8
BraA03t11104Z Brassica rapa HOM05D004545 ORTHO05D005420 2.1e-105 386.3 320 65.0
Phvul.007G062600 Phaseolus vulgaris HOM05D004545 ORTHO05D005420 2.1e-105 386.3 268 73.9
HanXRQChr10g0306541 Helianthus annuus HOM05D004545 ORTHO05D005420 2.7e-105 386.0 283 72.1
Carub.0004s1443 Capsella rubella HOM05D004545 ORTHO05D005420 3.5e-105 385.6 297 68.7
VMungo0720G1040 Vigna mungo HOM05D004545 ORTHO05D005420 4.6e-105 385.2 268 73.9
AL120U10020 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 1.3e-104 383.6 294 68.7
THA.LOC104826135 Tarenaya hassleriana HOM05D004545 ORTHO05D005420 1.3e-104 383.6 269 72.9
BraA05t20202Z Brassica rapa HOM05D004545 ORTHO05D005420 1.7e-104 383.3 291 67.0
Glyma.10G243100 Glycine max HOM05D004545 ORTHO05D005420 2.3e-104 382.9 265 74.0
BolC3t14537H Brassica oleracea HOM05D004545 ORTHO05D005420 1.1e-103 380.6 316 65.2
Peaxi162Scf00102g00840 Petunia axillaris HOM05D004545 ORTHO05D005420 1.9e-103 379.8 290 70.0
unitig_0.g926 Utricularia gibba HOM05D004545 ORTHO05D005420 3.3e-103 379.0 299 66.2
BcaC02g11365 Brassica carinata HOM05D004545 ORTHO05D005420 5.6e-103 378.3 292 67.5
HanXRQChr12g0373651 Helianthus annuus HOM05D004545 ORTHO05D005420 1.6e-102 376.7 283 70.3
AUR62018128 Chenopodium quinoa HOM05D004545 ORTHO05D005420 2.1e-102 376.3 269 71.7
Hund12365 Selenicereus undatus HOM05D004545 ORTHO05D005420 2.8e-102 375.9 295 68.1
AUR62034461 Chenopodium quinoa HOM05D004545 ORTHO05D005420 3.6e-102 375.6 269 71.4
C04p16530 Brassica napus HOM05D004545 ORTHO05D005420 4.7e-102 375.2 296 66.2
AL7G46590 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 6.2e-102 374.8 253 75.1
ECA234G0510 Erigeron canadensis HOM05D004545 ORTHO05D005420 8.1e-102 374.4 282 68.8
BcaB02g10513 Brassica carinata HOM05D004545 ORTHO05D005420 2.3e-101 372.9 295 67.8
Migut.H01332 Erythranthe guttata HOM05D004545 ORTHO05D005420 4.4e-100 368.6 293 67.6
BcaB01g03956 Brassica carinata HOM05D004545 ORTHO05D005420 1.7e-99 366.7 268 70.9
ATR0051G053 Amborella trichopoda HOM05D004545 ORTHO05D005420 1.9e-98 363.2 307 64.8
A05p12640 Brassica napus HOM05D004545 ORTHO05D005420 4.6e-97 358.6 267 68.5
Lj1A780G55 Lonicera japonica HOM05D004545 ORTHO05D005420 6.6e-96 354.8 252 73.0
arahy.Tifrunner.gnm1.ann1.DQ148B Arachis hypogaea HOM05D004545 ORTHO05D005420 8.6e-96 354.4 247 74.5
THA.LOC104816035 Tarenaya hassleriana HOM05D004545 ORTHO05D005420 8.6e-96 354.4 215 80.9
arahy.Tifrunner.gnm1.ann1.N045ZR Arachis hypogaea HOM05D004545 ORTHO05D005420 1.1e-95 354.0 247 74.5
vmacro09357 Vaccinium macrocarpon HOM05D004545 ORTHO05D005420 1.5e-95 353.6 255 74.9
arahy.Tifrunner.gnm1.ann1.71GTDD Arachis hypogaea HOM05D004545 ORTHO05D005420 1.9e-95 353.2 247 74.5
Lj5g0014275 Lotus japonicus HOM05D004545 ORTHO05D005420 1.6e-94 350.1 245 75.1
Os08g0204800 Oryza sativa ssp. japonica HOM05D004545 ORTHO05D005420 3.6e-94 349.0 280 68.2
BolC4t23201H Brassica oleracea HOM05D004545 ORTHO05D005420 3.1e-93 345.9 311 61.1
HPP92_013545 Vanilla planifolia HOM05D004545 ORTHO05D005420 2.6e-92 342.8 287 63.4
DCAR_027885 Daucus carota HOM05D004545 ORTHO05D005420 7.6e-92 341.3 234 76.5
Medtr4g068700 Medicago truncatula HOM05D004545 ORTHO05D005420 2.2e-91 339.7 248 72.6
Ca_24113_v3 Cicer arietinum L. HOM05D004545 ORTHO05D005420 4.9e-91 338.6 243 72.4
Psat7g206840 Pisum sativum HOM05D004545 ORTHO05D005420 1.1e-90 337.4 254 69.3
Zm00001eb413680 Zea mays HOM05D004545 ORTHO05D005420 2.4e-90 336.3 279 67.0
AL7G46610 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 1.1e-87 327.4 292 61.3
AL4G28510 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 6.9e-85 318.2 291 60.1
CSS0021334 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 4.2e-82 308.9 212 75.9
DCAR_021142 Daucus carota HOM05D004545 ORTHO05D005420 2.7e-81 306.2 296 60.1
Medtr1g102640 Medicago truncatula HOM05D004545 ORTHO05D005420 3.5e-81 305.8 224 72.3
Nn1g08031 Nelumbo nucifera HOM05D004545 ORTHO05D005420 6.0e-81 305.1 179 85.5
SMO340G0284 Selaginella moellendorffii HOM05D004545 ORTHO05D005420 3.4e-76 289.3 305 53.1
Psat6g203400 Pisum sativum HOM05D004545 ORTHO05D005420 3.8e-75 285.8 246 63.4
FAN09G3372 Fragaria x ananassa HOM05D004545 ORTHO05D005420 6.4e-75 285.0 179 79.3
SGA_v2.0_scaffold51G18651 Striga asiatica HOM05D004545 ORTHO05D005420 7.1e-74 281.6 215 69.8
Lsat_1_v5_gn_9_105760 Lactuca sativa HOM05D004545 ORTHO05D005420 3.5e-73 279.3 259 59.1
arahy.Tifrunner.gnm1.ann1.1MU1EY Arachis hypogaea HOM05D004545 ORTHO05D005420 7.9e-73 278.1 234 65.4
Mapoly0045s0122 Marchantia polymorpha HOM05D004545 ORTHO05D005420 7.9e-73 278.1 309 51.8
Pp3c6_19990 Physcomitrium patens HOM05D004545 ORTHO05D005420 7.9e-73 278.1 316 48.7
AagrBONN_evm.TU.Sc2ySwM_228.751 Anthoceros agrestis HOM05D004545 ORTHO05D005420 6.7e-72 275.0 301 50.5
CDE05G2122 Ceratophyllum demersum HOM05D004545 ORTHO05D005420 1.3e-70 270.8 257 59.9
HPP92_013592 Vanilla planifolia HOM05D004545 ORTHO05D005420 2.9e-67 259.6 179 70.9
HanXRQChr03g0076011 Helianthus annuus HOM05D004545 ORTHO05D005420 1.9e-66 256.9 282 53.9
SEGI_00177 Sequoiadendron giganteum HOM05D004545 ORTHO05D005420 3.5e-65 252.7 177 70.1
Oeu040086.1 Olea europaea HOM05D004545 ORTHO05D005420 7.9e-65 251.5 255 56.1
ECA240G4712 Erigeron canadensis HOM05D003996 ORTHO05D004665 5.1e-64 248.8 219 58.9
Nn6g32193 Nelumbo nucifera HOM05D004545 ORTHO05D005420 3.7e-62 242.7 163 75.5
Sopen08g004850 Solanum pennellii HOM05D004545 ORTHO05D005420 3.8e-59 232.6 139 82.7
Nitab4.5_0000185g0270 Nicotiana tabacum HOM05D004545 ORTHO05D005420 1.3e-54 217.6 204 59.3
RcHm_v2.0_Chr1g0329411 Rosa chinensis HOM05D004545 ORTHO05D005420 2.8e-54 216.5 256 55.1
RcHm_v2.0_Chr2g0158231 Rosa chinensis HOM05D004545 ORTHO05D005420 2.3e-48 196.8 173 63.0
CBR_g58792 Chara braunii HOM05D004545 ORTHO05D005420 3.7e-46 189.5 219 45.2
Sopen08g004840 Solanum pennellii HOM05D004545 ORTHO05D005420 4.5e-44 182.6 141 66.7
Gohir.D10G162700 Gossypium hirsutum HOM05D004545 ORTHO05D005420 3.8e-43 179.5 155 63.2
Hund15353 Selenicereus undatus HOM05D004545 ORTHO05D005420 1.6e-36 157.5 120 70.8
Gohir.D10G109450 Gossypium hirsutum HOM05D004545 ORTHO05D005420 2.1e-33 147.1 109 68.8
Nn6g33383 Nelumbo nucifera HOM05D004545 ORTHO05D005420 3.7e-30 136.3 82 81.7
Gorai.011G120100 Gossypium raimondii HOM05D004545 ORTHO05D005420 1.1e-26 124.8 79 75.9
RcHm_v2.0_Chr2g0158241 Rosa chinensis HOM05D004545 ORTHO05D005420 2.3e-24 117.1 64 87.5
RcHm_v2.0_Chr1g0361251 Rosa chinensis HOM05D004545 ORTHO05D005420 1.4e-16 91.3 66 71.2
FAN09G2083 Fragaria x ananassa HOM05D004545 ORTHO05D005420 6.8e-16 89.0 89 52.8
HPP92_013591 Vanilla planifolia HOM05D004545 ORTHO05D005420 6.8e-16 89.0 108 51.9
RcHm_v2.0_Chr2g0158191 Rosa chinensis HOM05D004545 ORTHO05D005420 8.3e-14 82.0 88 52.3
Nn6g33384 Nelumbo nucifera HOM05D004545 ORTHO05D005420 3.5e-12 76.6 52 71.2
Medtr2g005760 Medicago truncatula HOM05D004545 ORTHO05D005420 3.0e-08 63.5 48 66.7


User provided reference genes

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