Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO384G0227 Papaver somniferum HOM05D004374 ORTHO05D005430 2.0e-115 419.1 210 100.0
PSO478G4198 Papaver somniferum HOM05D004374 ORTHO05D005430 2.6e-86 322.4 209 82.3
TAR626G1960 Trochodendron aralioides HOM05D004374 ORTHO05D005430 2.1e-64 249.6 209 62.2
Rhsim01G0061800 Rhododendron simsii HOM05D004374 ORTHO05D005430 3.2e-60 235.7 209 57.9
Dinv41475 Davidia involucrata HOM05D004374 ORTHO05D005430 2.7e-59 232.6 209 59.8
PSO017G1812 Papaver somniferum HOM05D004374 ORTHO05D005430 1.7e-58 229.9 157 80.3
Aqoxy4G00722 Aquilegia oxysepala HOM05D004374 ORTHO05D005430 3.9e-58 228.8 206 60.2
Potri.006G065800 Populus trichocarpa HOM05D004374 ORTHO05D005430 6.6e-58 228.0 206 56.8
Ciclev10002076m.g Citrus clementina HOM05D004374 ORTHO05D005430 5.6e-57 224.9 205 58.0
Ciclev10032301m.g Citrus clementina HOM05D004374 ORTHO05D005430 1.6e-56 223.4 206 56.3
Thecc.09G131900 Theobroma cacao HOM05D004374 ORTHO05D005430 2.8e-56 222.6 206 56.3
GSVIVG01015588001 Vitis vinifera HOM05D004374 ORTHO05D005430 3.6e-56 222.2 209 56.5
Hma1.2p1_0343F.1_g130960 Hydrangea macrophylla HOM05D004374 ORTHO05D005430 4.8e-56 221.9 206 56.8
Hma1.2p1_1220F.1_g268070 Hydrangea macrophylla HOM05D004374 ORTHO05D005430 4.8e-56 221.9 206 56.3
TAR383G0672 Trochodendron aralioides HOM05D004374 ORTHO05D005430 4.8e-56 221.9 189 63.5
Prupe.1G493600 Prunus persica HOM05D004374 ORTHO05D005430 8.1e-56 221.1 209 55.5
MD05G1013300 Malus domestica HOM05D004374 ORTHO05D005430 1.8e-55 219.9 209 55.0
QL02p089838 Quercus lobata HOM05D004374 ORTHO05D005430 1.8e-55 219.9 209 56.9
Sabra06G0048000 Salix brachista HOM05D004374 ORTHO05D005430 3.1e-55 219.2 217 54.4
Nn8g39541 Nelumbo nucifera HOM05D004374 ORTHO05D005430 9.0e-55 217.6 209 57.4
Gorai.009G015600 Gossypium raimondii HOM05D004374 ORTHO05D005430 2.6e-54 216.1 205 55.1
Cfa008808 Carpinus fangiana HOM05D004374 ORTHO05D005430 3.4e-54 215.7 210 54.3
Gohir.D05G015500 Gossypium hirsutum HOM05D004374 ORTHO05D005430 4.4e-54 215.3 205 55.1
Manes.06G047300 Manihot esculenta HOM05D004374 ORTHO05D005430 4.4e-54 215.3 206 54.4
Ca_06940_v3 Cicer arietinum L. HOM05D004374 ORTHO05D005430 2.2e-53 213.0 209 55.0
Cc06_g08080 Coffea canephora HOM05D004374 ORTHO05D005430 2.2e-53 213.0 205 54.6
ClCG11G003340 Citrullus lanatus HOM05D004374 ORTHO05D005430 3.8e-53 212.2 207 53.1
PGR042G2992 Punica granatum HOM05D004374 ORTHO05D005430 1.9e-52 209.9 215 50.7
Dinv36480 Davidia involucrata HOM05D004374 ORTHO05D005430 2.4e-52 209.5 209 56.0
SGA_v2.0_scaffold154G37188 Striga asiatica HOM05D004374 ORTHO05D005430 3.2e-52 209.1 209 50.7
Duzib168G1544 Durio zibethinus HOM05D004374 ORTHO05D005430 4.2e-52 208.8 206 54.9
arahy.Tifrunner.gnm1.ann1.QKGT17 Arachis hypogaea HOM05D004374 ORTHO05D005430 9.3e-52 207.6 209 53.1
Psat4g038960 Pisum sativum HOM05D004374 ORTHO05D005430 9.3e-52 207.6 210 53.8
arahy.Tifrunner.gnm1.ann1.RD7K84 Arachis hypogaea HOM05D004374 ORTHO05D005430 1.2e-51 207.2 209 53.1
Lj4g0025213 Lotus japonicus HOM05D004374 ORTHO05D005430 1.2e-51 207.2 207 52.7
Lalb_Chr13g0301591 Lupinus albus HOM05D004374 ORTHO05D005430 2.1e-51 206.5 209 53.6
Medtr4g115320 Medicago truncatula HOM05D004374 ORTHO05D005430 2.7e-51 206.1 209 51.7
Cpa.g.sc46.39 Carica papaya HOM05D004374 ORTHO05D005430 4.6e-51 205.3 206 53.9
TWI34G0112 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 4.6e-51 205.3 209 52.6
vmacro15378 Vaccinium macrocarpon HOM05D004374 ORTHO05D005430 4.6e-51 205.3 242 47.5
CiPaw.05G118700 Carya illinoinensis HOM05D004374 ORTHO05D005430 6.0e-51 204.9 185 57.8
AUR62011174 Chenopodium quinoa HOM05D004374 ORTHO05D005430 7.8e-51 204.5 209 52.2
AUR62025401 Chenopodium quinoa HOM05D004374 ORTHO05D005430 7.8e-51 204.5 209 52.6
TPR.G24785 Trifolium pratense HOM05D004374 ORTHO05D005430 7.8e-51 204.5 209 52.2
Migut.K00426 Erythranthe guttata HOM05D004374 ORTHO05D005430 1.0e-50 204.1 209 50.7
CANSAT11G1308 Cannabis sativa HOM05D004374 ORTHO05D005430 1.7e-50 203.4 209 50.7
HanXRQChr06g0168691 Helianthus annuus HOM05D004374 ORTHO05D005430 2.3e-50 203.0 209 51.2
Lalb_Chr12g0197301 Lupinus albus HOM05D004374 ORTHO05D005430 2.3e-50 203.0 209 51.2
SGA_v2.0_scaffold138G35279 Striga asiatica HOM05D004374 ORTHO05D005430 2.3e-50 203.0 216 49.1
AUR62008844 Chenopodium quinoa HOM05D004374 ORTHO05D005430 3.0e-50 202.6 207 52.7
ECA240G2062 Erigeron canadensis HOM05D004374 ORTHO05D005430 3.9e-50 202.2 209 51.2
CsaV3_2G003190 Cucumis sativus L. HOM05D002754 ORTHO05D003271 5.1e-50 201.8 207 50.2
Sc18g0000370 Simmondsia chinensis HOM05D004374 ORTHO05D005430 6.6e-50 201.4 205 53.2
SalBow1G4424 Salvia bowleyana HOM05D004374 ORTHO05D005430 8.7e-50 201.1 209 51.2
Lsat_1_v5_gn_7_43761 Lactuca sativa HOM05D004374 ORTHO05D005430 1.5e-49 200.3 209 49.8
MSTRG.26430 Avicennia marina HOM05D004374 ORTHO05D005430 1.9e-49 199.9 209 47.8
Sopen07g003820 Solanum pennellii HOM05D004374 ORTHO05D005430 4.3e-49 198.7 209 48.8
Peaxi162Scf00088g01332 Petunia axillaris HOM05D004374 ORTHO05D005430 5.6e-49 198.4 209 48.3
TWI34G1386 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 1.3e-48 197.2 209 51.2
Sed0026824 Sechium edule HOM05D004374 ORTHO05D005430 1.6e-48 196.8 207 49.8
MELO3C004466.2 Cucumis melo HOM05D004374 ORTHO05D005430 2.1e-48 196.4 207 48.8
Solyc07g007940.3 Solanum lycopersicum HOM05D004374 ORTHO05D005430 4.8e-48 195.3 209 48.3
Nitab4.5_0002008g0060 Nicotiana tabacum HOM05D004374 ORTHO05D005430 6.2e-48 194.9 209 48.3
Phvul.003G168700 Phaseolus vulgaris HOM05D004374 ORTHO05D005430 1.8e-47 193.4 204 51.5
Eucgr.C01384 Eucalyptus grandis HOM05D004374 ORTHO05D005430 4.0e-47 192.2 180 56.1
Glyma.13G159900 Glycine max HOM05D004374 ORTHO05D005430 4.0e-47 192.2 209 49.8
DCAR_017779 Daucus carota HOM05D004374 ORTHO05D005430 1.5e-46 190.3 232 45.3
vmacro07719 Vaccinium macrocarpon HOM05D004374 ORTHO05D005430 2.6e-46 189.5 338 37.0
Nitab4.5_0009218g0020 Nicotiana tabacum HOM05D004374 ORTHO05D005430 4.5e-46 188.7 209 47.4
Medtr3g113180 Medicago truncatula HOM05D004374 ORTHO05D005430 7.6e-46 188.0 209 50.2
HPP92_020472 Vanilla planifolia HOM05D004374 ORTHO05D005430 7.6e-46 188.0 206 50.5
HPP92_026160 Vanilla planifolia HOM05D004374 ORTHO05D005430 7.6e-46 188.0 206 50.5
Lj3g0009396 Lotus japonicus HOM05D004374 ORTHO05D005430 1.3e-45 187.2 187 52.4
Sp5g09070 Schrenkiella parvula HOM05D004374 ORTHO05D005430 1.7e-45 186.8 201 50.2
Haze_11824 Corylus avellana HOM05D004374 ORTHO05D005430 2.2e-45 186.4 210 49.5
Atru.chr12.84 Acer truncatum HOM05D004374 ORTHO05D005430 2.9e-45 186.0 206 49.5
MBI04_g39649_MAGBIO Magnolia biondii HOM05D004374 ORTHO05D005430 4.9e-45 185.3 188 55.3
RcHm_v2.0_Chr2g0138971 Rosa chinensis HOM05D004374 ORTHO05D005430 4.9e-45 185.3 210 47.1
Lj7A483G16 Lonicera japonica HOM05D004374 ORTHO05D005430 6.4e-45 184.9 176 55.7
AL5G21410 Arabidopsis lyrata HOM05D004374 ORTHO05D005430 1.1e-44 184.1 206 47.6
AT3G53270 Arabidopsis thaliana HOM05D004374 ORTHO05D005430 1.4e-44 183.7 206 48.1
ATR0307G110 Amborella trichopoda HOM05D004374 ORTHO05D005430 1.9e-44 183.3 206 49.0
THA.LOC104826552 Tarenaya hassleriana HOM05D004374 ORTHO05D005430 7.1e-44 181.4 206 45.1
AL5G34180 Arabidopsis lyrata HOM05D004374 ORTHO05D005430 1.6e-43 180.3 221 44.8
Zm00001eb288690 Zea mays HOM05D004374 ORTHO05D005430 1.6e-43 180.3 202 47.0
A07p21500 Brassica napus HOM05D004374 ORTHO05D005430 2.7e-43 179.5 201 47.8
BolC6t37295H Brassica oleracea HOM05D004374 ORTHO05D005430 2.7e-43 179.5 201 48.3
EL10Ac8g18718 Beta vulgaris HOM05D004374 ORTHO05D005430 3.5e-43 179.1 209 47.8
C06p21110 Brassica napus HOM05D004374 ORTHO05D005430 3.5e-43 179.1 201 48.3
Carub.0005s1981 Capsella rubella HOM05D004374 ORTHO05D005430 3.5e-43 179.1 206 46.1
Thhalv10010555m.g Eutrema salsugineum HOM05D004374 ORTHO05D005430 6.0e-43 178.3 202 48.0
Lj5A680G20 Lonicera japonica HOM05D004374 ORTHO05D005430 7.9e-43 177.9 176 54.5
Sp1g13120 Schrenkiella parvula HOM05D004374 ORTHO05D005430 7.9e-43 177.9 216 45.8
Nitab4.5_0005465g0010 Nicotiana tabacum HOM05D004374 ORTHO05D005430 1.0e-42 177.6 209 45.9
SEGI_33846 Sequoiadendron giganteum HOM05D004374 ORTHO05D005430 1.0e-42 177.6 207 47.8
BraA07t29837Z Brassica rapa HOM05D004374 ORTHO05D005430 1.3e-42 177.2 201 47.3
Zm00001eb030790 Zea mays HOM05D004374 ORTHO05D005430 1.8e-42 176.8 202 45.5
Zm00001eb030830 Zea mays HOM05D004374 ORTHO05D005430 1.8e-42 176.8 202 45.5
Lj3g0021552 Lotus japonicus HOM05D004374 ORTHO05D005430 8.7e-42 174.5 180 51.1
BcaB02g07796 Brassica carinata HOM05D004374 ORTHO05D005430 1.9e-41 173.3 201 46.8
unitig_0.g2039 Utricularia gibba HOM05D004374 ORTHO05D005430 1.9e-41 173.3 255 39.2
VMungo1215G2312 Vigna mungo HOM05D004374 ORTHO05D005430 2.5e-41 172.9 194 48.5
FAN02G2909 Fragaria x ananassa HOM05D004374 ORTHO05D005430 2.8e-40 169.5 210 45.2
FAN09G4040 Fragaria x ananassa HOM05D004374 ORTHO05D005430 2.8e-40 169.5 210 45.2
FAN05G4736 Fragaria x ananassa HOM05D004374 ORTHO05D005430 3.7e-40 169.1 210 45.2
FvH4_6g31820 Fragaria vesca HOM05D004374 ORTHO05D005430 1.4e-39 167.2 210 44.8
FAN14G1328 Fragaria x ananassa HOM05D004374 ORTHO05D005430 1.4e-39 167.2 210 44.8
CAN.G1315.2 Capsicum annuum HOM05D004374 ORTHO05D005430 4.0e-39 165.6 209 44.0
Os10g0493800 Oryza sativa ssp. japonica HOM05D004374 ORTHO05D005430 5.3e-39 165.2 185 45.4
CAN.G1963.3 Capsicum annuum HOM05D004374 ORTHO05D005430 1.0e-37 161.0 256 38.7
Aa31LG9G14420 Aethionema arabicum HOM05D004374 ORTHO05D005430 1.3e-37 160.6 224 41.1
Thhalv10000991m.g Eutrema salsugineum HOM05D004374 ORTHO05D005430 1.3e-37 160.6 198 44.9
Potri.004G126720 Populus trichocarpa HOM05D004374 ORTHO05D005430 1.7e-37 160.2 151 55.6
Carub.0001s3232 Capsella rubella HOM05D004374 ORTHO05D005430 5.5e-36 155.2 209 43.5
COL.COLO4_35152 Corchorus olitorius HOM05D004374 ORTHO05D005430 5.5e-36 155.2 206 43.2
Gohir.A05G014400 Gossypium hirsutum HOM05D004374 ORTHO05D005430 1.3e-34 150.6 162 50.6
AUR62013310 Chenopodium quinoa HOM05D004374 ORTHO05D005430 9.0e-31 137.9 203 44.8
arahy.Tifrunner.gnm1.ann1.9N6VAH Arachis hypogaea HOM05D004374 ORTHO05D005430 1.5e-30 137.1 146 50.7
Hund26613 Selenicereus undatus HOM05D004374 ORTHO05D005430 2.9e-29 132.9 204 42.2
PGSC0003DMG400030909 Solanum tuberosum HOM05D004374 ORTHO05D005430 4.2e-28 129.0 209 36.4
Potri.004G126760 Populus trichocarpa HOM05D004374 ORTHO05D005430 3.5e-27 125.9 185 40.5
SEGI_36985 Sequoiadendron giganteum HOM05D004374 ORTHO05D005430 1.1e-25 120.9 209 38.3
Nitab4.5_0000245g0220 Nicotiana tabacum HOM05D004374 ORTHO05D005430 1.5e-25 120.6 128 48.4
Oeu032455.1 Olea europaea HOM05D004374 ORTHO05D005430 1.5e-25 120.6 100 56.0
Actinidia40498 Actinidia chinensis HOM05D004374 ORTHO05D005430 4.5e-22 109.0 89 64.0
Mapoly0001s0311 Marchantia polymorpha HOM05D004374 ORTHO05D005430 1.4e-20 104.0 200 32.5
CSS0004446 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 5.5e-20 102.1 107 52.3
Ah.09g224840 Amaranthus hybridus HOM05D004374 ORTHO05D005430 2.7e-19 99.8 180 33.9
Pp3c16_3150 Physcomitrium patens HOM05D004374 ORTHO05D005430 2.7e-19 99.8 200 30.5
CARHR163170 Cardamine hirsuta HOM05D004374 ORTHO05D005430 6.1e-19 98.6 168 36.3
Actinidia21955 Actinidia chinensis HOM05D004374 ORTHO05D005430 5.1e-18 95.5 86 57.0
Hund26538 Selenicereus undatus HOM05D004374 ORTHO05D005430 5.7e-17 92.0 105 50.5
AagrBONN_evm.TU.Sc2ySwM_228.3625 Anthoceros agrestis HOM05D004374 ORTHO05D005430 9.1e-15 84.7 188 30.9
arahy.Tifrunner.gnm1.ann1.8FF2M6 Arachis hypogaea HOM05D004374 ORTHO05D005430 9.1e-15 84.7 101 46.5
CAN.G778.6 Capsicum annuum HOM05D004374 ORTHO05D005430 2.0e-14 83.6 105 45.7
PGSC0003DMG400020805 Solanum tuberosum HOM05D004374 ORTHO05D005430 5.9e-14 82.0 113 39.8
CDE06G2323 Ceratophyllum demersum HOM05D004374 ORTHO05D005430 7.7e-14 81.6 209 29.7
Actinidia21954 Actinidia chinensis HOM05D004374 ORTHO05D005430 1.3e-13 80.9 79 53.2
Oeu032454.1 Olea europaea HOM05D004374 ORTHO05D005430 1.7e-13 80.5 89 46.1
SMO358G0132 Selaginella moellendorffii HOM05D004374 ORTHO05D005430 1.9e-12 77.0 189 29.6
CBR_g54313 Chara braunii HOM05D004374 ORTHO05D005430 6.1e-11 72.0 144 31.2
CSS0024212 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 3.9e-10 69.3 65 52.3
CSS0046554 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 1.1e-09 67.8 64 53.1
Nitab4.5_0000245g0210 Nicotiana tabacum HOM05D004374 ORTHO05D005430 1.5e-09 67.4 73 46.6
SHI22473 Sapria himalayana HOM05D004374 ORTHO05D005430 2.8e-08 63.2 66 45.5
BcaC07g39690 Brassica carinata HOM05D004374 ORTHO05D005430 4.8e-08 62.4 142 30.3
SHI22474 Sapria himalayana HOM05D004374 ORTHO05D005430 1.4e-07 60.8 40 65.0
CSS0020843 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 3.5e-06 56.2 53 52.8
C08p28500 Brassica napus HOM05D000209 ORTHO05D024195 5.9e-06 55.5 142 28.2
BolC8t50457H Brassica oleracea HOM05D000209 ORTHO05D024195 5.9e-06 55.5 142 28.2
A04p15700 Brassica napus HOM05D004374 ORTHO05D040369 7.7e-06 55.1 71 43.7


User provided reference genes

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