Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO339G6548 Papaver somniferum HOM05D004804 ORTHO05D005882 9.0e-212 740.0 364 100.0
PSO384G4865 Papaver somniferum HOM05D004804 ORTHO05D005882 3.9e-207 724.5 364 98.4
TAR623G1260 Trochodendron aralioides HOM05D004804 ORTHO05D005882 7.7e-163 577.4 365 78.1
Nn2g12889 Nelumbo nucifera HOM05D004804 ORTHO05D005882 4.2e-161 571.6 365 77.0
COL.COLO4_14869 Corchorus olitorius HOM05D004804 ORTHO05D005882 4.7e-160 568.2 365 77.0
Aqoxy4G03017 Aquilegia oxysepala HOM05D004804 ORTHO05D005882 1.2e-158 563.5 375 76.5
Hma1.2p1_1481F.1_g286070 Hydrangea macrophylla HOM05D004804 ORTHO05D005882 4.4e-158 561.6 310 84.5
Gohir.D04G118600 Gossypium hirsutum HOM05D004804 ORTHO05D005882 3.7e-157 558.5 365 74.5
Gohir.A04G079400 Gossypium hirsutum HOM05D004804 ORTHO05D005882 6.3e-157 557.8 330 79.1
GSVIVG01025612001 Vitis vinifera HOM05D004804 ORTHO05D005882 1.1e-156 557.0 308 84.7
Haze_20724 Corylus avellana HOM05D004804 ORTHO05D005882 1.4e-156 556.6 373 74.0
ECA238G1409 Erigeron canadensis HOM05D004804 ORTHO05D005882 7.0e-156 554.3 347 76.4
Gorai.009G423800 Gossypium raimondii HOM05D004804 ORTHO05D005882 9.1e-156 553.9 366 74.3
RcHm_v2.0_Chr3g0467571 Rosa chinensis HOM05D004804 ORTHO05D005882 1.2e-155 553.5 366 74.6
EL10Ac2g02842 Beta vulgaris HOM05D004804 ORTHO05D005882 1.6e-155 553.1 363 75.5
Lsat_1_v5_gn_2_111181 Lactuca sativa HOM05D004804 ORTHO05D005882 5.9e-155 551.2 325 79.1
Thecc.05G045900 Theobroma cacao HOM05D004804 ORTHO05D005882 1.0e-154 550.4 321 81.3
Actinidia05292 Actinidia chinensis HOM05D004804 ORTHO05D005882 1.3e-154 550.1 353 75.6
Duzib093G1125 Durio zibethinus HOM05D004804 ORTHO05D005882 1.3e-154 550.1 365 75.1
MD12G1136700 Malus domestica HOM05D004804 ORTHO05D005882 1.7e-154 549.7 366 74.0
Hund13338 Selenicereus undatus HOM05D004804 ORTHO05D005882 1.7e-154 549.7 314 83.4
Lj2A100T74 Lonicera japonica HOM05D004804 ORTHO05D005882 2.9e-154 548.9 324 79.6
Ciclev10012025m.g Citrus clementina HOM05D004804 ORTHO05D005882 1.9e-153 546.2 363 73.0
DCAR_009258 Daucus carota HOM05D004804 ORTHO05D005882 2.5e-153 545.8 370 73.2
MD04G1119400 Malus domestica HOM05D004804 ORTHO05D005882 3.3e-153 545.4 366 72.4
SalBow4G1685 Salvia bowleyana HOM05D004804 ORTHO05D005882 3.3e-153 545.4 321 79.4
Cfa017439 Carpinus fangiana HOM05D004804 ORTHO05D005882 4.2e-153 545.0 373 73.2
Sc01g0003910 Simmondsia chinensis HOM05D004804 ORTHO05D005882 4.2e-153 545.0 365 73.2
Aa31LG5G22830 Aethionema arabicum HOM05D004804 ORTHO05D005882 7.2e-153 544.3 364 74.2
Ah.10g030750 Amaranthus hybridus HOM05D004804 ORTHO05D005882 7.2e-153 544.3 337 78.3
Migut.L01624 Erythranthe guttata HOM05D004804 ORTHO05D005882 7.2e-153 544.3 354 73.2
Peaxi162Scf00039g00093 Petunia axillaris HOM05D004804 ORTHO05D005882 9.5e-153 543.9 360 73.6
CiPaw.09G187800 Carya illinoinensis HOM05D004804 ORTHO05D005882 1.6e-152 543.1 367 73.8
PGR004G0439 Punica granatum HOM05D004804 ORTHO05D005882 2.8e-152 542.3 347 76.4
Cc06_g03070 Coffea canephora HOM05D004804 ORTHO05D005882 3.6e-152 542.0 367 73.3
FAN02G1589 Fragaria x ananassa HOM05D004804 ORTHO05D005882 3.6e-152 542.0 342 75.4
Atru.chr8.1921 Acer truncatum HOM05D004804 ORTHO05D005882 4.7e-152 541.6 337 77.2
SGA_v2.0_scaffold126G33837 Striga asiatica HOM05D004804 ORTHO05D005882 4.7e-152 541.6 340 75.3
Manes.08G076545 Manihot esculenta HOM05D004804 ORTHO05D005882 8.0e-152 540.8 372 71.8
SalBow1G1981 Salvia bowleyana HOM05D004804 ORTHO05D005882 1.4e-151 540.0 346 75.1
CsaV3_4G024670 Cucumis sativus L. HOM05D004804 ORTHO05D005882 3.0e-151 538.9 341 75.1
FvH4_6g14490 Fragaria vesca HOM05D004804 ORTHO05D005882 3.0e-151 538.9 367 71.4
Solyc09g005700.3 Solanum lycopersicum HOM05D004804 ORTHO05D005882 4.0e-151 538.5 366 72.1
Oeu029811.2 Olea europaea HOM05D004804 ORTHO05D005882 5.2e-151 538.1 307 81.4
CANSAT80G2153 Cannabis sativa HOM05D004804 ORTHO05D005882 6.8e-151 537.7 370 71.6
Dinv37213 Davidia involucrata HOM05D004804 ORTHO05D005882 8.9e-151 537.3 363 72.7
BolC4t22652H Brassica oleracea HOM05D004804 ORTHO05D005882 1.2e-150 537.0 365 71.2
MSTRG.5692 Avicennia marina HOM05D004804 ORTHO05D005882 2.0e-150 536.2 369 71.8
QL07p046693 Quercus lobata HOM05D004804 ORTHO05D005882 2.6e-150 535.8 371 72.2
TWI53G1005 Tripterygium wilfordii HOM05D004804 ORTHO05D005882 2.6e-150 535.8 372 71.8
C04p10610 Brassica napus HOM05D004804 ORTHO05D005882 4.4e-150 535.0 365 71.0
Thhalv10016845m.g Eutrema salsugineum HOM05D004804 ORTHO05D005882 7.5e-150 534.3 360 73.3
Sed0001519 Sechium edule HOM05D004804 ORTHO05D005882 7.5e-150 534.3 369 71.3
AL5G34510 Arabidopsis lyrata HOM05D004804 ORTHO05D005882 9.8e-150 533.9 320 79.1
Eucgr.K03171 Eucalyptus grandis HOM05D004804 ORTHO05D005882 9.8e-150 533.9 309 81.2
A05p08530 Brassica napus HOM05D004804 ORTHO05D005882 1.3e-149 533.5 350 74.0
BraA05t19821Z Brassica rapa HOM05D004804 ORTHO05D005882 1.7e-149 533.1 350 74.0
HanXRQChr14g0453791 Helianthus annuus HOM05D004804 ORTHO05D005882 1.7e-149 533.1 364 70.9
THA.LOC104806587 Tarenaya hassleriana HOM05D004804 ORTHO05D005882 2.8e-149 532.3 363 72.7
AT3G53580 Arabidopsis thaliana HOM05D004804 ORTHO05D005882 3.7e-149 531.9 363 72.5
FAN09G0808 Fragaria x ananassa HOM05D004804 ORTHO05D005882 3.7e-149 531.9 363 71.6
AUR62026834 Chenopodium quinoa HOM05D004804 ORTHO05D005882 4.9e-149 531.6 360 73.9
Migut.J00372 Erythranthe guttata HOM05D004804 ORTHO05D005882 6.3e-149 531.2 347 73.2
Thhalv10010477m.g Eutrema salsugineum HOM05D004804 ORTHO05D005882 4.1e-148 528.5 315 79.7
Nitab4.5_0002995g0070 Nicotiana tabacum HOM05D004804 ORTHO05D005882 4.1e-148 528.5 361 72.6
Sp4g19750 Schrenkiella parvula HOM05D004804 ORTHO05D005882 4.1e-148 528.5 363 71.9
CAN.G125.11 Capsicum annuum HOM05D004804 ORTHO05D005882 7.0e-148 527.7 303 79.2
BcaB01g00261 Brassica carinata HOM05D004804 ORTHO05D005882 1.6e-147 526.6 321 78.5
Carub.0005s2015 Capsella rubella HOM05D004804 ORTHO05D005882 2.0e-147 526.2 312 79.5
A07p21740 Brassica napus HOM05D004804 ORTHO05D005882 2.7e-147 525.8 312 80.1
A09p46600 Brassica napus HOM05D004804 ORTHO05D005882 4.5e-147 525.0 320 78.8
Potri.006G102700 Populus trichocarpa HOM05D004804 ORTHO05D005882 4.5e-147 525.0 355 74.4
CARHR163490 Cardamine hirsuta HOM05D004804 ORTHO05D005882 5.9e-147 524.6 367 71.9
CDE08G0350 Ceratophyllum demersum HOM05D004804 ORTHO05D005882 7.8e-147 524.2 321 77.6
BolC6t37342H Brassica oleracea HOM05D004804 ORTHO05D005882 1.3e-146 523.5 312 79.8
Potri.016G120900 Populus trichocarpa HOM05D004804 ORTHO05D005882 1.3e-146 523.5 351 75.5
arahy.Tifrunner.gnm1.ann1.EYL599 Arachis hypogaea HOM05D004804 ORTHO05D005882 2.3e-146 522.7 367 71.1
BcaB02g07773 Brassica carinata HOM05D004804 ORTHO05D005882 3.8e-146 521.9 342 74.3
BraA09t40124Z Brassica rapa HOM05D004804 ORTHO05D005882 3.8e-146 521.9 322 78.3
Rhsim05G0187300 Rhododendron simsii HOM05D004804 ORTHO05D005882 3.8e-146 521.9 390 68.5
Sp5g08760 Schrenkiella parvula HOM05D004804 ORTHO05D005882 3.8e-146 521.9 362 71.8
ClCG04G008480 Citrullus lanatus HOM05D004804 ORTHO05D005882 8.6e-146 520.8 340 72.6
BraA07t29856Z Brassica rapa HOM05D004804 ORTHO05D005882 1.5e-145 520.0 313 79.6
BcaC08g44637 Brassica carinata HOM05D004804 ORTHO05D005882 5.6e-145 518.1 352 72.7
C06p21540 Brassica napus HOM05D004804 ORTHO05D005882 5.6e-145 518.1 352 72.7
Glyma.19G174300 Glycine max HOM05D004804 ORTHO05D005882 5.6e-145 518.1 368 69.0
VMungo1383G1812 Vigna mungo HOM05D004804 ORTHO05D005882 2.1e-144 516.2 335 71.9
Phvul.001G170900 Phaseolus vulgaris HOM05D004804 ORTHO05D005882 1.4e-143 513.5 333 72.4
Zm00001eb136710 Zea mays HOM05D004804 ORTHO05D005882 3.1e-143 512.3 312 77.2
C08p28920 Brassica napus HOM05D004804 ORTHO05D005882 5.2e-143 511.5 320 77.2
Lalb_Chr25g0289471 Lupinus albus HOM05D004804 ORTHO05D005882 1.2e-142 510.4 328 72.6
ATR0033G037 Amborella trichopoda HOM05D004804 ORTHO05D005882 4.4e-142 508.4 308 76.3
Glyma.03G173400 Glycine max HOM05D004804 ORTHO05D005882 5.8e-142 508.1 366 68.0
Actinidia19758 Actinidia chinensis HOM05D004804 ORTHO05D001149 7.5e-142 507.7 366 71.0
unitig_27.g24899 Utricularia gibba HOM05D002116 ORTHO05D005882 2.2e-141 506.1 359 68.2
Lalb_Chr20g0113121 Lupinus albus HOM05D004804 ORTHO05D005882 1.4e-140 503.4 359 67.1
TPR.G21455 Trifolium pratense HOM05D004804 ORTHO05D005882 1.4e-140 503.4 322 72.4
FAN14G5408 Fragaria x ananassa HOM05D004804 ORTHO05D005882 3.2e-140 502.3 366 67.8
Lj1g0023900 Lotus japonicus HOM05D004804 ORTHO05D005882 5.4e-140 501.5 314 74.2
Ca_07739_v3 Cicer arietinum L. HOM05D004804 ORTHO05D005882 1.6e-139 500.0 338 69.8
Medtr7g100345 Medicago truncatula HOM05D004804 ORTHO05D005882 2.7e-139 499.2 368 67.9
Ca_08795_v3 Cicer arietinum L. HOM05D004804 ORTHO05D005882 7.8e-139 497.7 364 65.9
Nitab4.5_0004851g0050 Nicotiana tabacum HOM05D004804 ORTHO05D005882 2.5e-137 492.7 482 55.6
HPP92_019459 Vanilla planifolia HOM05D004804 ORTHO05D005882 5.6e-137 491.5 360 68.3
Nitab4.5_0005039g0030 Nicotiana tabacum HOM05D004804 ORTHO05D005882 4.7e-136 488.4 393 63.6
vmacro20115 Vaccinium macrocarpon HOM05D004804 ORTHO05D005882 4.7e-136 488.4 321 73.8
CSS0039312 Camellia sinensis var. sinensis HOM05D004804 ORTHO05D001149 1.4e-132 476.9 327 71.6
MELO3C003100.2 Cucumis melo HOM05D004804 ORTHO05D005882 5.6e-129 464.9 392 60.5
AUR62037218 Chenopodium quinoa HOM05D004804 ORTHO05D005882 1.8e-127 459.9 324 71.6
BcaNung07017 Brassica carinata HOM05D004804 ORTHO05D005882 9.9e-126 454.1 292 76.0
Sabra06G0079000 Salix brachista HOM05D004804 ORTHO05D005882 2.2e-125 453.0 277 77.6
AagrBONN_evm.TU.Sc2ySwM_228.1472 Anthoceros agrestis HOM05D004804 ORTHO05D005882 1.9e-121 439.9 293 68.3
SMO118G0282 Selaginella moellendorffii HOM05D004804 ORTHO05D005882 1.1e-119 434.1 286 71.0
Psat3g121680 Pisum sativum HOM05D004804 ORTHO05D005882 8.4e-117 424.5 311 66.2
BcaNung07160 Brassica carinata HOM05D004804 ORTHO05D005882 2.4e-116 422.9 355 63.9
Mapoly0001s0200 Marchantia polymorpha HOM05D004804 ORTHO05D005882 2.5e-113 412.9 286 68.2
AUR62038459 Chenopodium quinoa HOM05D004804 ORTHO05D005882 6.9e-111 404.8 243 78.2
BcaC07g39720 Brassica carinata HOM05D004804 ORTHO05D005882 4.4e-110 402.1 326 66.0
Sopen09g001590 Solanum pennellii HOM05D004804 ORTHO05D005882 2.9e-109 399.4 282 68.4
Pp3c10_3520 Physcomitrium patens HOM05D004804 ORTHO05D005882 1.9e-108 396.7 293 63.8
Cre05.g237400 Chlamydomonas reinhardtii HOM05D004804 ORTHO05D005882 1.1e-103 380.9 287 63.4
MCO16G320 Micromonas commoda HOM05D004804 ORTHO05D005882 1.2e-99 367.5 330 56.4
Zm00001eb028810 Zea mays HOM05D004804 ORTHO05D005882 7.4e-97 358.2 235 70.2
Prupe.6G249100 Prunus persica HOM05D004804 ORTHO05D005882 1.7e-93 347.1 257 67.7
SMO116G0240 Selaginella moellendorffii HOM05D004804 ORTHO05D005882 3.8e-93 345.9 294 56.5
Cpa.g.c31068.3 Carica papaya HOM05D004804 ORTHO05D005882 6.0e-91 338.6 256 65.6
BolC8t50494H Brassica oleracea HOM05D004804 ORTHO05D005882 5.7e-89 332.0 326 58.0
PRCOL_00004448 Prasinoderma coloniale HOM05D004804 ORTHO05D005882 5.8e-86 322.0 288 58.0
Cpa.g.c30481.1 Carica papaya HOM05D004804 ORTHO05D005882 4.5e-78 295.8 168 82.1
MD07G1084600 Malus domestica HOM05D004804 ORTHO05D005882 5.1e-74 282.3 159 79.2
Medtr7g072350 Medicago truncatula HOM05D004804 ORTHO05D005882 3.0e-66 256.5 230 57.0
MD07G1085800 Malus domestica HOM05D004804 ORTHO05D005882 3.9e-58 229.6 127 84.3
FvH4_5g27660 Fragaria vesca HOM05D004804 ORTHO05D005882 3.3e-57 226.5 152 69.1
AUR62014235 Chenopodium quinoa HOM05D004804 ORTHO05D005882 2.0e-54 217.2 323 44.6
BcaC05g25676 Brassica carinata HOM05D004804 ORTHO05D005882 4.7e-51 206.1 147 68.0
BcaC03g18267 Brassica carinata HOM05D004804 ORTHO05D005882 1.7e-45 187.6 147 63.9
BcaC03g18268 Brassica carinata HOM05D004804 ORTHO05D005882 6.1e-43 179.1 147 62.6
FAN18G1921 Fragaria x ananassa HOM05D004804 ORTHO05D005882 6.1e-43 179.1 100 79.0
SEGI_18757 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 1.4e-39 167.9 96 72.9
SEGI_29945 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 1.1e-36 158.3 110 64.5
BcaC01g02299 Brassica carinata HOM05D004804 ORTHO05D005882 1.9e-36 157.5 147 55.1
Hma1.2p1_0683F.1_g202920 Hydrangea macrophylla HOM05D004804 ORTHO05D005882 3.3e-28 130.2 72 86.1
MSTRG.19109 Avicennia marina HOM05D004804 ORTHO05D005882 2.7e-22 110.5 79 62.0
SEGI_13543 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 8.6e-21 105.5 64 78.1
Atru.chr5.1411 Acer truncatum HOM05D004804 ORTHO05D005882 1.9e-20 104.4 57 82.5
C03p66890 Brassica napus HOM05D004804 ORTHO05D005882 4.4e-17 93.2 67 64.2
BolC3t18959H Brassica oleracea HOM05D004804 ORTHO05D005882 4.4e-17 93.2 67 64.2
BolC5t30247H Brassica oleracea HOM05D003490 ORTHO05D039708 4.1e-15 86.7 45 82.2
C03p66880 Brassica napus HOM05D004804 ORTHO05D005882 9.2e-15 85.5 45 82.2
BolC3t18958H Brassica oleracea HOM05D004804 ORTHO05D005882 1.6e-14 84.7 44 84.1
FAN13G1509 Fragaria x ananassa HOM05D004804 ORTHO05D022561 6.6e-13 79.3 41 82.9
Rhsim01G0214400 Rhododendron simsii HOM05D004804 ORTHO05D000007 1.9e-12 77.8 35 94.3
SGA_v2.0_scaffold594G53100 Striga asiatica HOM05D004804 ORTHO05D005882 3.4e-09 67.0 71 46.5
RcHm_v2.0_Chr6g0244381 Rosa chinensis HOM05D004556 ORTHO05D005298 2.2e-08 64.3 40 77.5
Oeu030496.1 Olea europaea HOM05D004804 ORTHO05D005882 2.4e-07 60.8 98 44.9
CBR_g29560 Chara braunii HOM05D002780 ORTHO05D005882 3.2e-07 60.5 129 30.2


User provided reference genes

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