Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO339G4490 Papaver somniferum HOM05D005580 ORTHO05D006395 3.1e-111 405.2 214 100.0
PSO384G2205 Papaver somniferum HOM05D005580 ORTHO05D006395 6.9e-111 404.1 214 99.5
TAR623G0785 Trochodendron aralioides HOM05D005580 ORTHO05D006395 5.9e-78 294.7 221 68.8
TAR633G1881 Trochodendron aralioides HOM05D005580 ORTHO05D006395 1.3e-77 293.5 204 72.5
Sabra08G0040500 Salix brachista HOM05D005580 ORTHO05D006395 5.0e-77 291.6 206 69.9
Nitab4.5_0001097g0030 Nicotiana tabacum HOM05D005580 ORTHO05D006395 6.5e-77 291.2 198 73.7
Nitab4.5_0013062g0010 Nicotiana tabacum HOM05D005580 ORTHO05D006395 1.4e-76 290.0 223 70.9
Potri.008G055800 Populus trichocarpa HOM05D005580 ORTHO05D006395 5.5e-76 288.1 205 69.8
Potri.010G203900 Populus trichocarpa HOM05D005580 ORTHO05D006395 5.5e-76 288.1 205 69.8
Prupe.2G235300 Prunus persica HOM05D005580 ORTHO05D006395 1.2e-75 287.0 206 70.4
Gohir.D13G019900 Gossypium hirsutum HOM05D005580 ORTHO05D006395 1.6e-75 286.6 194 73.7
MBI05_g22035_MAGBIO Magnolia biondii HOM05D005580 ORTHO05D006395 2.1e-75 286.2 202 72.3
Nn2g13341 Nelumbo nucifera HOM05D005580 ORTHO05D006395 3.6e-75 285.4 228 68.9
FAN01G0694 Fragaria x ananassa HOM05D005580 ORTHO05D006395 7.9e-75 284.3 233 62.7
FAN01G2215 Fragaria x ananassa HOM05D005580 ORTHO05D006395 7.9e-75 284.3 233 62.7
Gorai.013G022300 Gossypium raimondii HOM05D005580 ORTHO05D006395 7.9e-75 284.3 194 73.7
MD01G1134100 Malus domestica HOM05D005580 ORTHO05D006395 1.8e-74 283.1 217 66.8
Sabra10G0157500 Salix brachista HOM05D005580 ORTHO05D006395 2.3e-74 282.7 202 67.8
Cpa.g.sc1.404 Carica papaya HOM05D005580 ORTHO05D006395 3.0e-74 282.3 219 66.7
Gohir.A13G019300 Gossypium hirsutum HOM05D005580 ORTHO05D006395 3.0e-74 282.3 194 72.7
Peaxi162Scf00886g00003 Petunia axillaris HOM05D005580 ORTHO05D006395 3.0e-74 282.3 210 68.6
FvH4_7g22470 Fragaria vesca HOM05D005580 ORTHO05D006395 5.1e-74 281.6 233 63.1
FAN03G1496 Fragaria x ananassa HOM05D005580 ORTHO05D006395 5.1e-74 281.6 233 63.1
FAN10G2347 Fragaria x ananassa HOM05D005580 ORTHO05D006395 5.1e-74 281.6 233 63.1
Thecc.10G042400 Theobroma cacao HOM05D005580 ORTHO05D006395 5.1e-74 281.6 204 71.6
Cc02_g07860 Coffea canephora HOM05D005580 ORTHO05D006395 6.7e-74 281.2 208 70.7
DCAR_011695 Daucus carota HOM05D005580 ORTHO05D006395 6.7e-74 281.2 225 66.2
CiPaw.01G287400 Carya illinoinensis HOM05D005580 ORTHO05D006395 8.8e-74 280.8 220 66.4
RcHm_v2.0_Chr1g0367081 Rosa chinensis HOM05D005580 ORTHO05D006395 8.8e-74 280.8 233 62.7
FAN06G0736 Fragaria x ananassa HOM05D005580 ORTHO05D006395 1.1e-73 280.4 233 62.7
FAN06G1328 Fragaria x ananassa HOM05D005580 ORTHO05D006395 1.1e-73 280.4 233 62.7
Eucgr.G02934 Eucalyptus grandis HOM05D005580 ORTHO05D006395 1.5e-73 280.0 204 68.6
COL.COLO4_15040 Corchorus olitorius HOM05D005580 ORTHO05D006395 2.6e-73 279.3 212 67.9
Cfa001474 Carpinus fangiana HOM05D005580 ORTHO05D006395 4.4e-73 278.5 216 67.1
Duzib128G0371 Durio zibethinus HOM05D005580 ORTHO05D006395 4.4e-73 278.5 205 68.3
Lsat_1_v5_gn_2_119121 Lactuca sativa HOM05D005580 ORTHO05D006395 4.4e-73 278.5 211 66.8
MD07G1198300 Malus domestica HOM05D005580 ORTHO05D006395 4.4e-73 278.5 227 65.2
CiPaw.02G183900 Carya illinoinensis HOM05D005580 ORTHO05D006395 7.4e-73 277.7 205 67.8
ClCG09G019730 Citrullus lanatus HOM05D005580 ORTHO05D006395 7.4e-73 277.7 201 68.7
Nn2g11101 Nelumbo nucifera HOM05D005580 ORTHO05D006395 9.7e-73 277.3 224 69.2
Oeu064380.1 Olea europaea HOM05D005580 ORTHO05D006395 1.7e-72 276.6 201 69.2
GSVIVG01016552001 Vitis vinifera HOM05D005580 ORTHO05D006395 2.2e-72 276.2 207 68.6
Lj1g0024567 Lotus japonicus HOM05D005580 ORTHO05D006395 2.8e-72 275.8 210 66.7
HanXRQChr02g0037481 Helianthus annuus HOM05D005580 ORTHO05D006395 3.7e-72 275.4 190 71.6
CsaV3_5G026670 Cucumis sativus L. HOM05D005580 ORTHO05D006395 4.8e-72 275.0 203 67.5
ECA238G1104 Erigeron canadensis HOM05D005580 ORTHO05D006395 4.8e-72 275.0 196 69.4
Gohir.A10G218800 Gossypium hirsutum HOM05D005580 ORTHO05D006395 4.8e-72 275.0 202 67.3
HanXRQChr14g0457951 Helianthus annuus HOM05D005580 ORTHO05D006395 4.8e-72 275.0 202 68.8
Rhsim03G0130700 Rhododendron simsii HOM05D005580 ORTHO05D006395 4.8e-72 275.0 212 67.9
Sc10g0001550 Simmondsia chinensis HOM05D005580 ORTHO05D006395 4.8e-72 275.0 190 72.6
VMungo1383G1027 Vigna mungo HOM05D005580 ORTHO05D006395 4.8e-72 275.0 208 68.3
Glyma.18G291400 Glycine max HOM05D005580 ORTHO05D006395 6.3e-72 274.6 207 67.1
CANSAT56G2481 Cannabis sativa HOM05D005580 ORTHO05D006395 8.2e-72 274.2 209 67.9
Glyma.02G091600 Glycine max HOM05D005580 ORTHO05D006395 8.2e-72 274.2 208 67.3
Gohir.D10G228400 Gossypium hirsutum HOM05D005580 ORTHO05D006395 8.2e-72 274.2 202 67.3
Gorai.011G260800 Gossypium raimondii HOM05D005580 ORTHO05D006395 8.2e-72 274.2 202 67.3
TWI38G1118 Tripterygium wilfordii HOM05D005580 ORTHO05D006395 1.1e-71 273.9 218 65.1
MELO3C021630.2 Cucumis melo HOM05D005580 ORTHO05D006395 1.4e-71 273.5 201 67.7
PGR142G3643 Punica granatum HOM05D005580 ORTHO05D006395 1.4e-71 273.5 214 66.4
Sed0020308 Sechium edule HOM05D005580 ORTHO05D006395 1.4e-71 273.5 201 67.7
Duzib106G1822 Durio zibethinus HOM05D005580 ORTHO05D006395 2.4e-71 272.7 196 70.4
Phvul.008G010700 Phaseolus vulgaris HOM05D005580 ORTHO05D006395 2.4e-71 272.7 197 70.1
CSS0041204 Camellia sinensis var. sinensis HOM05D005580 ORTHO05D006395 3.1e-71 272.3 232 64.7
CANSAT56G4483 Cannabis sativa HOM05D005580 ORTHO05D006395 5.3e-71 271.6 209 67.0
Manes.07G116200 Manihot esculenta HOM05D005580 ORTHO05D006395 5.3e-71 271.6 220 63.6
PGSC0003DMG400023532 Solanum tuberosum HOM05D005580 ORTHO05D006395 5.3e-71 271.6 195 69.2
Atru.chr12.452 Acer truncatum HOM05D005580 ORTHO05D006395 7.0e-71 271.2 212 66.5
Atru.chr12.474 Acer truncatum HOM05D005580 ORTHO05D006395 7.0e-71 271.2 212 66.5
Solyc05g054450.1 Solanum lycopersicum HOM05D005580 ORTHO05D006395 7.0e-71 271.2 197 69.0
Sed0002022 Sechium edule HOM05D005580 ORTHO05D006395 9.1e-71 270.8 201 65.7
Sopen05g032940 Solanum pennellii HOM05D005580 ORTHO05D006395 9.1e-71 270.8 197 69.0
Manes.10G030300 Manihot esculenta HOM05D005580 ORTHO05D006395 2.6e-70 269.2 209 66.0
Lsat_1_v5_gn_8_15580 Lactuca sativa HOM05D005580 ORTHO05D006395 4.5e-70 268.5 209 69.4
vmacro07170 Vaccinium macrocarpon HOM05D005580 ORTHO05D006395 4.5e-70 268.5 201 66.7
QL08p059794 Quercus lobata HOM05D005580 ORTHO05D006395 7.7e-70 267.7 225 62.2
SalBow6G2402 Salvia bowleyana HOM05D005580 ORTHO05D006395 2.2e-69 266.2 190 70.0
Lalb_Chr17g0336141 Lupinus albus HOM05D005580 ORTHO05D006395 3.8e-69 265.4 228 62.7
PSO339G6083 Papaver somniferum HOM05D005580 ORTHO05D006395 3.8e-69 265.4 190 72.6
THA.LOC104810028 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 3.8e-69 265.4 203 65.5
TWI63G0967 Tripterygium wilfordii HOM05D005580 ORTHO05D006395 8.5e-69 264.2 218 64.2
DCAR_027619 Daucus carota HOM05D005580 ORTHO05D006395 1.1e-68 263.8 231 60.6
PSO151G0057 Papaver somniferum HOM05D005580 ORTHO05D006395 1.5e-68 263.5 190 72.1
ATR0559G355 Amborella trichopoda HOM05D005580 ORTHO05D006395 3.2e-68 262.3 210 62.9
MSTRG.8252 Avicennia marina HOM05D005580 ORTHO05D006395 4.2e-68 261.9 196 67.9
Medtr7g026320 Medicago truncatula HOM05D005580 ORTHO05D006395 4.2e-68 261.9 207 64.7
HPP92_019446 Vanilla planifolia HOM05D005580 ORTHO05D006395 4.2e-68 261.9 224 60.7
TPR.G23775 Trifolium pratense HOM05D005580 ORTHO05D006395 9.4e-68 260.8 209 64.1
Ca_26455_v3 Cicer arietinum L. HOM05D005580 ORTHO05D006395 2.7e-67 259.2 205 64.4
Lj8C84T10 Lonicera japonica HOM05D005580 ORTHO05D006395 3.6e-67 258.8 231 59.7
C08p30630 Brassica napus HOM05D005580 ORTHO05D006395 1.0e-66 257.3 219 65.3
SEGI_33908 Sequoiadendron giganteum HOM05D005580 ORTHO05D006395 2.3e-66 256.1 197 65.0
Os05g0459300 Oryza sativa ssp. japonica HOM05D005580 ORTHO05D006395 3.0e-66 255.8 194 67.0
BolC8t50680H Brassica oleracea HOM05D005580 ORTHO05D006395 4.0e-66 255.4 219 65.8
A09p48340 Brassica napus HOM05D005580 ORTHO05D006395 6.7e-66 254.6 219 64.8
BraA09t40286Z Brassica rapa HOM05D005580 ORTHO05D006395 6.7e-66 254.6 219 64.8
C08p30460 Brassica napus HOM05D005580 ORTHO05D006395 8.8e-66 254.2 219 64.8
Ah.16g102300 Amaranthus hybridus HOM05D005580 ORTHO05D006395 1.1e-65 253.8 217 59.9
BcaC07g39844 Brassica carinata HOM05D005580 ORTHO05D006395 1.1e-65 253.8 219 64.8
CDE02G1824 Ceratophyllum demersum HOM05D005580 ORTHO05D006395 7.5e-65 251.1 194 65.5
Psat3g161760 Pisum sativum HOM05D005580 ORTHO05D006395 7.5e-65 251.1 210 61.9
Thhalv10010708m.g Eutrema salsugineum HOM05D005580 ORTHO05D006395 1.3e-64 250.4 215 63.7
Sp5g07050 Schrenkiella parvula HOM05D005580 ORTHO05D006395 1.7e-64 250.0 215 64.2
BcaC02g09755 Brassica carinata HOM05D005580 ORTHO05D006395 3.7e-64 248.8 219 63.5
C04p36960 Brassica napus HOM05D005580 ORTHO05D006395 3.7e-64 248.8 219 63.5
BolC4t25261H Brassica oleracea HOM05D005580 ORTHO05D006395 3.7e-64 248.8 219 63.5
Aa31LG10G10450 Aethionema arabicum HOM05D005580 ORTHO05D006395 4.8e-64 248.4 212 62.7
AT3G55420 Arabidopsis thaliana HOM05D005580 ORTHO05D006395 4.8e-64 248.4 215 63.7
BcaB01g00102 Brassica carinata HOM05D005580 ORTHO05D006395 4.8e-64 248.4 220 62.3
Carub.0005s2214 Capsella rubella HOM05D005580 ORTHO05D006395 6.3e-64 248.1 196 64.3
THA.LOC104807715 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 6.3e-64 248.1 204 63.2
THA.LOC104824274 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 6.3e-64 248.1 195 64.1
BraA04t16163Z Brassica rapa HOM05D005580 ORTHO05D006395 1.4e-63 246.9 219 61.6
unitig_8.g3317 Utricularia gibba HOM05D005580 ORTHO05D006395 1.4e-63 246.9 215 62.8
A04p04530 Brassica napus HOM05D005580 ORTHO05D006395 4.1e-63 245.4 219 61.2
CsaV3_5G008020 Cucumis sativus L. HOM05D005580 ORTHO05D006395 4.1e-63 245.4 188 62.8
AL5G36570 Arabidopsis lyrata HOM05D005580 ORTHO05D006395 5.3e-63 245.0 215 62.8
MELO3C023848.2 Cucumis melo HOM05D005580 ORTHO05D006395 1.2e-62 243.8 201 60.2
AUR62012083 Chenopodium quinoa HOM05D005580 ORTHO05D006395 1.6e-62 243.4 192 64.6
Lalb_Chr10g0091641 Lupinus albus HOM05D005580 ORTHO05D006395 7.7e-62 241.1 223 58.7
Sed0012553 Sechium edule HOM05D005580 ORTHO05D006395 1.3e-61 240.4 180 62.8
ClCG07G003270 Citrullus lanatus HOM05D005580 ORTHO05D006395 2.2e-61 239.6 197 59.9
Dinv26015 Davidia involucrata HOM05D005580 ORTHO05D006395 2.9e-61 239.2 198 63.6
BcaC07g39859 Brassica carinata HOM05D005580 ORTHO05D006395 1.2e-57 227.3 209 59.8
Os12g0571300 Oryza sativa ssp. japonica HOM05D005580 ORTHO05D006395 2.2e-56 223.0 193 57.5
Lj1P937T48 Lonicera japonica HOM05D005580 ORTHO05D006395 1.2e-54 217.2 143 74.1
Actinidia02948 Actinidia chinensis HOM05D005580 ORTHO05D006395 1.1e-52 210.7 213 58.2
AUR62039380 Chenopodium quinoa HOM05D000020 ORTHO05D001617 4.7e-51 205.3 160 66.2
CARHR165440 Cardamine hirsuta HOM05D005580 ORTHO05D006395 6.8e-50 201.4 177 63.8
BcaB02g08423 Brassica carinata HOM05D005580 ORTHO05D006395 9.8e-49 197.6 180 63.3
Ciclev10032947m.g Citrus clementina HOM05D005580 ORTHO05D006395 9.5e-44 181.0 120 71.7
Dinv03047 Davidia involucrata HOM05D005580 ORTHO05D006395 6.1e-43 178.3 227 50.2
CDE08G0377 Ceratophyllum demersum HOM05D005580 ORTHO05D006395 8.3e-40 167.9 188 51.6
SGA_v2.0_scaffold2G01004 Striga asiatica HOM05D005580 ORTHO05D006395 1.4e-39 167.2 121 64.5
Aqoxy4G02929 Aquilegia oxysepala HOM05D005580 ORTHO05D006395 1.2e-38 164.1 121 69.4
SGA_v2.0_scaffold221G42666 Striga asiatica HOM05D005580 ORTHO05D006395 2.0e-38 163.3 103 72.8
Cc05_g01760 Coffea canephora HOM05D005580 ORTHO05D006395 5.9e-38 161.8 189 49.2
Oeu048246.1 Olea europaea HOM05D005580 ORTHO05D006395 1.4e-34 150.6 104 69.2
Migut.F01495 Erythranthe guttata HOM05D005580 ORTHO05D006395 2.6e-33 146.4 102 68.6
SEGI_21732 Sequoiadendron giganteum HOM05D003049 ORTHO05D003531 1.4e-18 97.4 62 72.6
arahy.Tifrunner.gnm1.ann1.HEV3CF Arachis hypogaea HOM05D000969 ORTHO05D011765 1.1e-12 77.8 61 63.9
Pp3c12_3400 Physcomitrium patens HOM05D000906 ORTHO05D000713 4.6e-06 55.8 166 26.5


User provided reference genes

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