Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO339G2253 Papaver somniferum HOM05D003524 ORTHO05D003988 3.9e-51 204.5 104 100.0
BcaB03g12722 Brassica carinata HOM05D003524 ORTHO05D003988 4.8e-33 144.4 97 72.2
AL7G20150 Arabidopsis lyrata HOM05D003524 ORTHO05D003988 3.1e-32 141.7 97 71.1
BcaC01g01055 Brassica carinata HOM05D003524 ORTHO05D003988 3.1e-32 141.7 97 71.1
A08p18430 Brassica napus HOM05D003524 ORTHO05D003988 3.1e-32 141.7 97 71.1
C03p87500 Brassica napus HOM05D003524 ORTHO05D003988 3.1e-32 141.7 97 71.1
BolC3t21069H Brassica oleracea HOM05D003524 ORTHO05D003988 3.1e-32 141.7 97 71.1
CiPaw.07G230500 Carya illinoinensis HOM05D003524 ORTHO05D003988 3.1e-32 141.7 104 70.2
A01p06450 Brassica napus HOM05D003524 ORTHO05D003988 4.0e-32 141.4 97 71.1
C01p07090 Brassica napus HOM05D003524 ORTHO05D003988 4.0e-32 141.4 97 71.1
BolC1t00701H Brassica oleracea HOM05D003524 ORTHO05D003988 4.0e-32 141.4 97 71.1
BraA01t00606Z Brassica rapa HOM05D003524 ORTHO05D003988 4.0e-32 141.4 97 71.1
Sp7g29640 Schrenkiella parvula HOM05D003524 ORTHO05D003988 4.0e-32 141.4 97 71.1
AT4G31830 Arabidopsis thaliana HOM05D003524 ORTHO05D003988 9.0e-32 140.2 97 70.1
Thhalv10026655m.g Eutrema salsugineum HOM05D003524 ORTHO05D003988 9.0e-32 140.2 97 71.1
CARHR239750 Cardamine hirsuta HOM05D003524 ORTHO05D003988 1.5e-31 139.4 97 70.1
Carub.0007s0872 Capsella rubella HOM05D003524 ORTHO05D003988 4.5e-31 137.9 97 68.0
TAR383G0003 Trochodendron aralioides HOM05D003524 ORTHO05D003988 5.8e-31 137.5 104 68.3
Aa31LG2G18400 Aethionema arabicum HOM05D003524 ORTHO05D003988 7.6e-31 137.1 100 68.0
TWI34G0563 Tripterygium wilfordii HOM05D003524 ORTHO05D003988 7.6e-31 137.1 97 70.1
Haze_21415 Corylus avellana HOM05D003524 ORTHO05D003988 1.7e-30 136.0 97 69.1
BcaC09g51975 Brassica carinata HOM05D003524 ORTHO05D003988 3.8e-30 134.8 97 68.0
Aqoxy7G03391 Aquilegia oxysepala HOM05D003524 ORTHO05D003988 4.9e-30 134.4 97 63.9
Haze_21413 Corylus avellana HOM05D003524 ORTHO05D003988 4.9e-30 134.4 96 67.7
Migut.A00356 Erythranthe guttata HOM05D003524 ORTHO05D003988 4.9e-30 134.4 97 63.9
Cfa013050 Carpinus fangiana HOM05D003524 ORTHO05D003988 1.9e-29 132.5 97 67.0
Nn8g39910 Nelumbo nucifera HOM05D003524 ORTHO05D003988 1.9e-29 132.5 97 69.1
BraA08t33803Z Brassica rapa HOM05D003524 ORTHO05D003988 2.5e-29 132.1 89 71.9
ClCG05G016230 Citrullus lanatus HOM05D003524 ORTHO05D003988 7.1e-29 130.6 98 64.3
CSS0001588 Camellia sinensis var. sinensis HOM05D003524 ORTHO05D003988 9.3e-29 130.2 101 65.3
MELO3C016955.2 Cucumis melo HOM05D003524 ORTHO05D003988 9.3e-29 130.2 99 64.6
Manes.03G008400 Manihot esculenta HOM05D003524 ORTHO05D003988 9.3e-29 130.2 97 66.0
SGA_v2.0_scaffold22G09905 Striga asiatica HOM05D003524 ORTHO05D003988 9.3e-29 130.2 98 63.3
THA.LOC104803862 Tarenaya hassleriana HOM05D003524 ORTHO05D003988 1.2e-28 129.8 97 64.9
CAN.G353.11 Capsicum annuum HOM05D003524 ORTHO05D003988 2.1e-28 129.0 97 66.0
Nitab4.5_0002011g0040 Nicotiana tabacum HOM05D003524 ORTHO05D003988 4.6e-28 127.9 97 66.0
Prupe.1G394000 Prunus persica HOM05D003524 ORTHO05D003988 4.6e-28 127.9 97 64.9
Atru.chr7.2561 Acer truncatum HOM05D003524 ORTHO05D003988 7.9e-28 127.1 100 62.0
QL02p018819 Quercus lobata HOM05D003524 ORTHO05D003988 7.9e-28 127.1 96 65.6
Eucgr.L02917 Eucalyptus grandis HOM05D003524 ORTHO05D003988 1.0e-27 126.7 96 65.6
Gohir.D05G062000 Gossypium hirsutum HOM05D003524 ORTHO05D003988 1.8e-27 125.9 100 62.0
Gorai.009G063100 Gossypium raimondii HOM05D003524 ORTHO05D003988 1.8e-27 125.9 100 62.0
CsaV3_4G036500 Cucumis sativus L. HOM05D003524 ORTHO05D003988 2.3e-27 125.6 99 62.6
CANSAT25G3000 Cannabis sativa HOM05D003524 ORTHO05D003988 3.0e-27 125.2 97 63.9
GSVIVG01035971001 Vitis vinifera HOM05D003524 ORTHO05D003988 3.9e-27 124.8 99 62.6
Cc08_g07080 Coffea canephora HOM05D003524 ORTHO05D003988 5.1e-27 124.4 97 60.8
Cc08_g07090 Coffea canephora HOM05D003524 ORTHO05D003988 5.1e-27 124.4 97 60.8
Lsat_1_v5_gn_4_88160 Lactuca sativa HOM05D003361 ORTHO05D003988 5.1e-27 124.4 102 59.8
RcHm_v2.0_Chr6g0299391 Rosa chinensis HOM05D003524 ORTHO05D003988 5.1e-27 124.4 95 64.2
Cc08_g07120 Coffea canephora HOM05D003524 ORTHO05D003988 6.7e-27 124.0 97 61.9
ECA232G2703 Erigeron canadensis HOM05D003524 ORTHO05D003988 6.7e-27 124.0 102 61.8
Lj5g0009668 Lotus japonicus HOM05D003524 ORTHO05D003988 6.7e-27 124.0 104 62.5
Lj5g0020130 Lotus japonicus HOM05D003524 ORTHO05D003988 6.7e-27 124.0 107 62.6
Lj1g0009607 Lotus japonicus HOM05D003524 ORTHO05D003988 1.1e-26 123.2 105 61.0
Cpa.g.sc127.42 Carica papaya HOM05D003524 ORTHO05D003988 1.5e-26 122.9 93 63.4
Lalb_Chr14g0361751 Lupinus albus HOM05D003524 ORTHO05D003988 1.5e-26 122.9 100 61.0
HanXRQChr09g0274741 Helianthus annuus HOM05D003524 ORTHO05D003988 1.9e-26 122.5 102 58.8
Peaxi162Scf00045g02028 Petunia axillaris HOM05D003524 ORTHO05D003988 1.9e-26 122.5 97 62.9
Gohir.A05G059800 Gossypium hirsutum HOM05D003524 ORTHO05D003988 2.5e-26 122.1 99 60.6
Oeu009646.1 Olea europaea HOM05D003524 ORTHO05D003988 2.5e-26 122.1 97 61.9
Eucgr.C02607 Eucalyptus grandis HOM05D003524 ORTHO05D003988 3.3e-26 121.7 96 63.5
Medtr1g014110 Medicago truncatula HOM05D003524 ORTHO05D003988 3.3e-26 121.7 107 57.9
BcaNung03115 Brassica carinata HOM05D003524 ORTHO05D003988 4.3e-26 121.3 97 63.9
PGR044G0872 Punica granatum HOM05D003524 ORTHO05D003988 5.7e-26 120.9 104 57.7
COL.COLO4_18953 Corchorus olitorius HOM05D003524 ORTHO05D003988 9.6e-26 120.2 97 60.8
Ca_13066_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 1.6e-25 119.4 103 58.3
MD08G1056200 Malus domestica HOM05D003524 ORTHO05D003988 3.7e-25 118.2 97 57.7
SalBow4G2912 Salvia bowleyana HOM05D003524 ORTHO05D003988 4.8e-25 117.9 96 57.3
MD15G1040800 Malus domestica HOM05D003524 ORTHO05D003988 6.2e-25 117.5 97 57.7
Rhsim02G0212800 Rhododendron simsii HOM05D003524 ORTHO05D003988 6.2e-25 117.5 95 62.1
Solyc08g006800.3 Solanum lycopersicum HOM05D003524 ORTHO05D003988 6.2e-25 117.5 101 56.4
Actinidia22287 Actinidia chinensis HOM05D000091 ORTHO05D003988 1.1e-24 116.7 96 60.4
arahy.Tifrunner.gnm1.ann1.PTAL7S Arachis hypogaea HOM05D003524 ORTHO05D003988 1.1e-24 116.7 100 62.0
arahy.Tifrunner.gnm1.ann1.ZW8IXI Arachis hypogaea HOM05D003524 ORTHO05D003988 1.1e-24 116.7 100 62.0
EL10Ac2g02500 Beta vulgaris HOM05D003524 ORTHO05D003988 1.1e-24 116.7 99 65.7
TPR.G38873 Trifolium pratense HOM05D003524 ORTHO05D003988 1.1e-24 116.7 104 55.8
FAN27G2394 Fragaria x ananassa HOM05D003524 ORTHO05D003988 1.4e-24 116.3 96 61.5
PGSC0003DMG400026298 Solanum tuberosum HOM05D003524 ORTHO05D003988 4.1e-24 114.8 91 63.7
unitig_748.g7378 Utricularia gibba HOM05D003524 ORTHO05D003988 2.0e-23 112.5 102 53.9
DCAR_022861 Daucus carota HOM05D003524 ORTHO05D003988 3.4e-23 111.7 89 64.0
Psat6g025880 Pisum sativum HOM05D003524 ORTHO05D003988 5.8e-23 110.9 104 54.8
AUR62024806 Chenopodium quinoa HOM05D003524 ORTHO05D003988 1.0e-22 110.2 100 61.0
FAN20G2483 Fragaria x ananassa HOM05D003524 ORTHO05D003988 1.3e-22 109.8 96 59.4
Sopen08g002750 Solanum pennellii HOM05D003524 ORTHO05D003988 1.3e-22 109.8 91 59.3
Potri.018G018300 Populus trichocarpa HOM05D003524 ORTHO05D003988 1.1e-21 106.7 95 58.9
Ah.12g060790 Amaranthus hybridus HOM05D003524 ORTHO05D003988 1.9e-21 105.9 98 58.2
Manes.16G130000 Manihot esculenta HOM05D003524 ORTHO05D003988 3.2e-21 105.1 89 59.6
BcaC01g01054 Brassica carinata HOM05D003524 ORTHO05D003988 4.2e-21 104.8 76 68.4
Duzib168G0976 Durio zibethinus HOM05D003524 ORTHO05D003988 2.3e-19 99.0 94 56.4
Glyma.17G223300 Glycine max HOM05D003524 ORTHO05D003988 2.3e-19 99.0 97 54.6
SHI21076 Sapria himalayana HOM05D003524 ORTHO05D003988 1.1e-18 96.7 77 62.3
Sc08g0005190 Simmondsia chinensis HOM05D003524 ORTHO05D003988 1.9e-18 95.9 80 60.0
Sc08g0005200 Simmondsia chinensis HOM05D003524 ORTHO05D003988 1.9e-18 95.9 80 60.0
CiPaw.03G202100 Carya illinoinensis HOM05D003524 ORTHO05D003988 5.7e-18 94.4 84 59.5
unitig_32.g11664 Utricularia gibba HOM05D006934 ORTHO05D008743 7.4e-18 94.0 82 53.7
Glyma.14G101900 Glycine max HOM05D003524 ORTHO05D003988 9.7e-18 93.6 82 59.8
Haze_19201 Corylus avellana HOM05D003524 ORTHO05D003988 1.6e-17 92.8 84 60.7
Phvul.001G041500 Phaseolus vulgaris HOM05D003524 ORTHO05D003988 2.2e-17 92.4 82 57.3
Sed0019715 Sechium edule HOM05D003524 ORTHO05D003988 8.2e-17 90.5 99 49.5
Cfa020822 Carpinus fangiana HOM05D003524 ORTHO05D003988 1.8e-16 89.4 82 58.5
TAR625G1231 Trochodendron aralioides HOM05D003524 ORTHO05D003988 4.1e-16 88.2 84 57.1
FAN15G0945 Fragaria x ananassa HOM05D003524 ORTHO05D003988 5.3e-16 87.8 72 59.7
Os09g0127700 Oryza sativa ssp. japonica HOM05D003524 ORTHO05D003988 1.5e-15 86.3 94 47.9
vmacro06076 Vaccinium macrocarpon HOM05D003524 ORTHO05D003988 2.0e-15 85.9 89 53.9
Zm00001eb095580 Zea mays HOM05D003524 ORTHO05D003988 3.4e-15 85.1 94 47.9
Cc06_g14890 Coffea canephora HOM05D003524 ORTHO05D003988 5.9e-15 84.3 70 62.9
MBI15_g18244_MAGBIO Magnolia biondii HOM05D003524 ORTHO05D003988 2.2e-14 82.4 83 54.2
ClCG06G012430 Citrullus lanatus HOM05D003524 ORTHO05D003988 3.8e-14 81.6 77 57.1
Lalb_Chr08g0234291 Lupinus albus HOM05D003524 ORTHO05D003988 6.5e-14 80.9 80 51.2
MSTRG.6141 Avicennia marina HOM05D003524 ORTHO05D003988 1.9e-13 79.3 72 56.9
AUR62029823 Chenopodium quinoa HOM05D003524 ORTHO05D003988 1.9e-13 79.3 78 52.6
MELO3C010217.2 Cucumis melo HOM05D003524 ORTHO05D003988 1.9e-13 79.3 81 50.6
Psat0s2403g0200 Pisum sativum HOM05D003524 ORTHO05D003988 1.9e-13 79.3 75 54.7
Prupe.7G263500 Prunus persica HOM05D003524 ORTHO05D003988 1.9e-13 79.3 80 53.8
Sopen07g001680 Solanum pennellii HOM05D003524 ORTHO05D003988 4.2e-13 78.2 69 58.0
QL02p093340 Quercus lobata HOM05D003524 ORTHO05D003988 7.2e-13 77.4 74 56.8
Migut.K00320 Erythranthe guttata HOM05D003524 ORTHO05D003988 9.4e-13 77.0 67 58.2
Lalb_Chr11g0072661 Lupinus albus HOM05D003524 ORTHO05D003988 2.7e-12 75.5 75 50.7
Rhsim03G0257300 Rhododendron simsii HOM05D000122 ORTHO05D000139 2.7e-12 75.5 69 56.5
EL10Ac4g10348 Beta vulgaris HOM05D003524 ORTHO05D003988 4.6e-12 74.7 72 55.6
Medtr4g130810 Medicago truncatula HOM05D003524 ORTHO05D003988 4.6e-12 74.7 70 54.3
Oeu021302.1 Olea europaea HOM05D003524 ORTHO05D003988 4.6e-12 74.7 118 41.5
MD15G1144300 Malus domestica HOM05D003524 ORTHO05D003988 7.9e-12 73.9 69 53.6
arahy.Tifrunner.gnm1.ann1.36ASSY Arachis hypogaea HOM05D003524 ORTHO05D003988 1.8e-11 72.8 62 58.1
arahy.Tifrunner.gnm1.ann1.YXTM1W Arachis hypogaea HOM05D003524 ORTHO05D003988 1.8e-11 72.8 62 58.1
CSS0041430 Camellia sinensis var. sinensis HOM05D003524 ORTHO05D003988 1.8e-11 72.8 84 50.0
Potri.006G183800 Populus trichocarpa HOM05D003524 ORTHO05D003988 1.8e-11 72.8 62 59.7
Ca_21130_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 3.0e-11 72.0 70 51.4
Ca_28168_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 3.0e-11 72.0 70 51.4
PGSC0003DMG401011138 Solanum tuberosum HOM05D003524 ORTHO05D003988 3.0e-11 72.0 62 58.1
Hma1.2p1_0028F.1_g017600 Hydrangea macrophylla HOM05D003524 ORTHO05D003988 3.9e-11 71.6 63 57.1
TPR.G24858 Trifolium pratense HOM05D003524 ORTHO05D003988 5.1e-11 71.2 70 51.4
Dinv42850 Davidia involucrata HOM05D003524 ORTHO05D003988 6.7e-11 70.9 75 52.0
Dinv43250 Davidia involucrata HOM05D003524 ORTHO05D003988 6.7e-11 70.9 75 52.0
Atru.chr7.178 Acer truncatum HOM05D003524 ORTHO05D003988 1.1e-10 70.1 62 58.1
COL.COLO4_18813 Corchorus olitorius HOM05D003524 ORTHO05D003988 1.5e-10 69.7 60 61.7
Glyma.02G204400 Glycine max HOM05D003524 ORTHO05D003988 1.5e-10 69.7 69 52.2
SalBow1G7165 Salvia bowleyana HOM05D003524 ORTHO05D003988 1.5e-10 69.7 64 54.7
Ciclev10010389m.g Citrus clementina HOM05D003524 ORTHO05D003988 3.3e-10 68.6 67 55.2
Nn7g38002 Nelumbo nucifera HOM05D003524 ORTHO05D003988 3.3e-10 68.6 88 47.7
Cpa.g.sc46.161 Carica papaya HOM05D000332 ORTHO05D000268 4.3e-10 68.2 62 56.5
Sed0002480 Sechium edule HOM05D003524 ORTHO05D003988 7.4e-10 67.4 69 50.7
SGA_v2.0_scaffold12G06006 Striga asiatica HOM05D003524 ORTHO05D003988 7.4e-10 67.4 82 46.3
ECA240G1327 Erigeron canadensis HOM05D003524 ORTHO05D003988 9.7e-10 67.0 63 58.7
Phvul.003G155700 Phaseolus vulgaris HOM05D003524 ORTHO05D003988 1.3e-09 66.6 67 52.2
Nitab4.5_0006523g0040 Nicotiana tabacum HOM05D003524 ORTHO05D003988 1.7e-09 66.2 81 48.1
Sabra06G0139800 Salix brachista HOM05D003524 ORTHO05D003988 3.7e-09 65.1 67 52.2
Thecc.09G029400 Theobroma cacao HOM05D003524 ORTHO05D003988 3.7e-09 65.1 65 55.4
AUR62032414 Chenopodium quinoa HOM05D003524 ORTHO05D003988 6.3e-09 64.3 93 44.1
Lsat_1_v5_gn_7_49941 Lactuca sativa HOM05D003524 ORTHO05D003988 1.1e-08 63.5 64 54.7
Potri.018G106300 Populus trichocarpa HOM05D003524 ORTHO05D003988 1.1e-08 63.5 67 50.7
Gohir.D05G054800 Gossypium hirsutum HOM05D003524 ORTHO05D003988 1.4e-08 63.2 65 56.9
Eucgr.C00343 Eucalyptus grandis HOM05D003524 ORTHO05D003988 1.8e-08 62.8 60 55.0
Cpa.g.sc136.44 Carica papaya HOM05D003524 ORTHO05D003988 3.1e-08 62.0 62 51.6
AagrBONN_evm.TU.Sc2ySwM_368.420 Anthoceros agrestis HOM05D003524 ORTHO05D003988 4.1e-08 61.6 43 60.5
FAN23G1251 Fragaria x ananassa HOM05D003524 ORTHO05D003988 5.3e-08 61.2 82 43.9
FAN26G0389 Fragaria x ananassa HOM05D003524 ORTHO05D003988 5.3e-08 61.2 82 43.9
FAN28G2066 Fragaria x ananassa HOM05D003524 ORTHO05D003988 5.3e-08 61.2 82 43.9
Gorai.009G056500 Gossypium raimondii HOM05D003524 ORTHO05D003988 3.4e-07 58.5 46 65.2
Nn2g14054 Nelumbo nucifera HOM05D003524 ORTHO05D003988 3.4e-07 58.5 80 43.8
Nn2g14056 Nelumbo nucifera HOM05D003524 ORTHO05D003988 3.4e-07 58.5 80 43.8
Gohir.A05G053200 Gossypium hirsutum HOM05D003524 ORTHO05D003988 4.5e-07 58.2 46 63.0
Nitab4.5_0002947g0020 Nicotiana tabacum HOM05D003524 ORTHO05D003988 4.5e-07 58.2 47 61.7
Nn2g12399 Nelumbo nucifera HOM05D003524 ORTHO05D003988 1.3e-06 56.6 48 60.4
Mapoly0006s0148 Marchantia polymorpha HOM05D003524 ORTHO05D003988 1.7e-06 56.2 73 39.7
BcaB01g02731 Brassica carinata HOM05D003524 ORTHO05D003988 5.0e-06 54.7 63 52.4
BcaC01g04654 Brassica carinata HOM05D003524 ORTHO05D003988 6.5e-06 54.3 63 52.4
A03p29240 Brassica napus HOM05D003524 ORTHO05D003988 6.5e-06 54.3 63 52.4
C03p35250 Brassica napus HOM05D003524 ORTHO05D003988 6.5e-06 54.3 63 52.4
BolC3t15837H Brassica oleracea HOM05D003524 ORTHO05D003988 6.5e-06 54.3 63 52.4
BraA03t12119Z Brassica rapa HOM05D003524 ORTHO05D003988 6.5e-06 54.3 63 52.4
Prupe.1G394100 Prunus persica HOM05D003524 ORTHO05D003988 6.5e-06 54.3 90 38.9


User provided reference genes

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