Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO339G1317 Papaver somniferum HOM05D004396 ORTHO05D005272 1.0e-58 229.9 122 100.0
PSO384G3027 Papaver somniferum HOM05D004396 ORTHO05D005272 2.9e-58 228.4 122 99.2
PSO541G6011 Papaver somniferum HOM05D004396 ORTHO05D005272 3.9e-58 228.0 122 99.2
PSO675G8737 Papaver somniferum HOM05D004396 ORTHO05D005272 2.5e-57 225.3 122 97.5
CSS0033679 Camellia sinensis var. sinensis HOM05D004396 ORTHO05D005272 1.6e-51 206.1 114 93.0
ATR0626G058 Amborella trichopoda HOM05D004396 ORTHO05D005272 2.7e-51 205.3 122 86.9
Hma1.2p1_0870F.1_g230890 Hydrangea macrophylla HOM05D004396 ORTHO05D005272 3.5e-51 204.9 114 91.2
Peaxi162Scf00170g00812 Petunia axillaris HOM05D004396 ORTHO05D005272 7.8e-51 203.8 114 92.1
Rhsim11G0021700 Rhododendron simsii HOM05D004396 ORTHO05D005272 7.8e-51 203.8 114 92.1
Actinidia14779 Actinidia chinensis HOM05D004396 ORTHO05D005272 1.0e-50 203.4 114 92.1
CARHR129690 Cardamine hirsuta HOM05D004396 ORTHO05D005272 1.0e-50 203.4 113 92.0
Dinv25260 Davidia involucrata HOM05D004396 ORTHO05D005272 1.3e-50 203.0 114 91.2
Dinv29003 Davidia involucrata HOM05D004396 ORTHO05D005272 1.3e-50 203.0 114 92.1
CiPaw.11G098400 Carya illinoinensis HOM05D004396 ORTHO05D005272 1.7e-50 202.6 115 89.6
Actinidia18135 Actinidia chinensis HOM05D004396 ORTHO05D005272 2.3e-50 202.2 114 91.2
COL.COLO4_16940 Corchorus olitorius HOM05D004396 ORTHO05D005272 3.0e-50 201.8 114 91.2
THA.LOC104814414 Tarenaya hassleriana HOM05D004396 ORTHO05D005272 3.0e-50 201.8 115 91.3
CSS0013599 Camellia sinensis var. sinensis HOM05D004396 ORTHO05D005272 3.9e-50 201.4 114 90.4
CSS0046263 Camellia sinensis var. sinensis HOM05D004396 ORTHO05D005272 3.9e-50 201.4 114 90.4
Nn3g19387 Nelumbo nucifera HOM05D004396 ORTHO05D005272 3.9e-50 201.4 115 91.3
TAR375G0183 Trochodendron aralioides HOM05D004396 ORTHO05D005272 3.9e-50 201.4 115 90.4
Thhalv10017441m.g Eutrema salsugineum HOM05D004396 ORTHO05D005272 5.0e-50 201.1 115 88.7
QL12p001650 Quercus lobata HOM05D004396 ORTHO05D005272 5.0e-50 201.1 112 89.3
Solyc08g076460.3 Solanum lycopersicum HOM05D004396 ORTHO05D005272 5.0e-50 201.1 114 91.2
Sopen08g025040 Solanum pennellii HOM05D004396 ORTHO05D005272 5.0e-50 201.1 114 91.2
PGSC0003DMG400014795 Solanum tuberosum HOM05D004396 ORTHO05D005272 5.0e-50 201.1 114 91.2
Hma1.2p1_0890F.1_g233090 Hydrangea macrophylla HOM05D004396 ORTHO05D005272 8.6e-50 200.3 114 88.6
SGA_v2.0_scaffold36G14295 Striga asiatica HOM05D004396 ORTHO05D005272 8.6e-50 200.3 122 86.1
Thecc.03G310300 Theobroma cacao HOM05D004396 ORTHO05D005272 8.6e-50 200.3 114 91.2
AL4G31570 Arabidopsis lyrata HOM05D004396 ORTHO05D005272 1.1e-49 199.9 114 88.6
CAN.G726.24 Capsicum annuum HOM05D004396 ORTHO05D005272 1.1e-49 199.9 114 90.4
DCAR_008222 Daucus carota HOM05D004396 ORTHO05D005272 1.1e-49 199.9 115 88.7
HanXRQChr06g0172781 Helianthus annuus HOM05D004396 ORTHO05D005272 1.1e-49 199.9 122 87.7
Nitab4.5_0000529g0110 Nicotiana tabacum HOM05D004396 ORTHO05D005272 1.1e-49 199.9 114 88.6
AT2G35520 Arabidopsis thaliana HOM05D004396 ORTHO05D005272 1.5e-49 199.5 113 89.4
ClCG10G001270 Citrullus lanatus HOM05D004396 ORTHO05D005272 1.5e-49 199.5 115 88.7
Ciclev10002883m.g Citrus clementina HOM05D004396 ORTHO05D005272 1.5e-49 199.5 115 90.4
vmacro00278 Vaccinium macrocarpon HOM05D004396 ORTHO05D005272 1.5e-49 199.5 114 89.5
Sabra03G0065300 Salix brachista HOM05D004396 ORTHO05D005272 1.9e-49 199.1 115 87.8
THA.LOC104798491 Tarenaya hassleriana HOM05D004396 ORTHO05D005272 1.9e-49 199.1 115 89.6
AL1G46340 Arabidopsis lyrata HOM05D004396 ORTHO05D005272 3.3e-49 198.4 113 89.4
Carub.0001s3054 Capsella rubella HOM05D004396 ORTHO05D005272 3.3e-49 198.4 113 90.3
CARHR031580 Cardamine hirsuta HOM05D004396 ORTHO05D005272 3.3e-49 198.4 113 89.4
Thhalv10009144m.g Eutrema salsugineum HOM05D004396 ORTHO05D005272 3.3e-49 198.4 113 89.4
Oeu027093.1 Olea europaea HOM05D004396 ORTHO05D005272 3.3e-49 198.4 114 87.7
GSVIVG01013064001 Vitis vinifera HOM05D004396 ORTHO05D005272 3.3e-49 198.4 115 88.7
AT1G32210 Arabidopsis thaliana HOM05D004396 ORTHO05D005272 4.3e-49 198.0 113 89.4
Cc08_g03470 Coffea canephora HOM05D004396 ORTHO05D005272 4.3e-49 198.0 114 89.5
Haze_08163 Corylus avellana HOM05D004396 ORTHO05D005272 4.3e-49 198.0 115 89.6
Nitab4.5_0000556g0250 Nicotiana tabacum HOM05D004396 ORTHO05D005272 4.3e-49 198.0 114 89.5
Nitab4.5_0004528g0030 Nicotiana tabacum HOM05D004396 ORTHO05D005272 4.3e-49 198.0 114 89.5
Hund10776 Selenicereus undatus HOM05D004396 ORTHO05D005272 4.3e-49 198.0 115 88.7
TWI81G0111 Tripterygium wilfordii HOM05D004396 ORTHO05D005272 4.3e-49 198.0 115 87.8
SGA_v2.0_scaffold198G41072 Striga asiatica HOM05D004396 ORTHO05D005272 5.6e-49 197.6 122 85.2
Aqoxy7G03666 Aquilegia oxysepala HOM05D004396 ORTHO05D005272 7.3e-49 197.2 123 85.4
Potri.003G096800 Populus trichocarpa HOM05D004396 ORTHO05D005272 7.3e-49 197.2 115 87.8
BcaB07g32895 Brassica carinata HOM05D004396 ORTHO05D005272 9.5e-49 196.8 113 89.4
BraA09t38945Z Brassica rapa HOM05D004396 ORTHO05D005272 9.5e-49 196.8 113 89.4
Carub.0004s1721 Capsella rubella HOM05D004396 ORTHO05D005272 9.5e-49 196.8 113 86.7
Ca_25178_v3 Cicer arietinum L. HOM05D004396 ORTHO05D005272 9.5e-49 196.8 122 86.1
Eucgr.H00688 Eucalyptus grandis HOM05D004396 ORTHO05D005272 9.5e-49 196.8 115 87.8
HanXRQChr13g0414241 Helianthus annuus HOM05D004396 ORTHO05D005272 9.5e-49 196.8 122 86.1
Manes.12G090054 Manihot esculenta HOM05D004396 ORTHO05D005272 9.5e-49 196.8 115 88.7
Sp1g27890 Schrenkiella parvula HOM05D004396 ORTHO05D005272 9.5e-49 196.8 113 89.4
BcaB03g13752 Brassica carinata HOM05D004396 ORTHO05D005272 1.2e-48 196.4 113 88.5
BcaB04g17995 Brassica carinata HOM05D004396 ORTHO05D005272 1.2e-48 196.4 113 88.5
CsaV3_3G001340 Cucumis sativus L. HOM05D004396 ORTHO05D005272 1.2e-48 196.4 115 87.8
Gorai.003G185400 Gossypium raimondii HOM05D004396 ORTHO05D005272 1.2e-48 196.4 114 90.4
Lsat_1_v5_gn_3_19181 Lactuca sativa HOM05D004396 ORTHO05D005272 1.2e-48 196.4 122 86.9
PGR031G0362 Punica granatum HOM05D004396 ORTHO05D005272 1.2e-48 196.4 115 87.0
PGR031G2119 Punica granatum HOM05D004396 ORTHO05D005272 1.2e-48 196.4 115 87.0
MSTRG.12178 Avicennia marina HOM05D004396 ORTHO05D005272 1.6e-48 196.1 115 87.0
BcaC05g27252 Brassica carinata HOM05D004396 ORTHO05D005272 1.6e-48 196.1 113 88.5
C05p31610 Brassica napus HOM05D004396 ORTHO05D005272 1.6e-48 196.1 113 88.5
CDE08G0196 Ceratophyllum demersum HOM05D004396 ORTHO05D005272 1.6e-48 196.1 114 86.8
Duzib084G0048 Durio zibethinus HOM05D004396 ORTHO05D005272 1.6e-48 196.1 114 89.5
Duzib205G0471 Durio zibethinus HOM05D004396 ORTHO05D005272 1.6e-48 196.1 113 89.4
Manes.04G055632 Manihot esculenta HOM05D004396 ORTHO05D005272 1.6e-48 196.1 115 88.7
Sc01g0005580 Simmondsia chinensis HOM05D004396 ORTHO05D005272 1.6e-48 196.1 115 87.8
Phvul.002G136700 Phaseolus vulgaris HOM05D004396 ORTHO05D005272 2.1e-48 195.7 115 87.8
arahy.Tifrunner.gnm1.ann1.Z3U2VZ Arachis hypogaea HOM05D004396 ORTHO05D005272 2.8e-48 195.3 115 87.8
A05p25120 Brassica napus HOM05D004396 ORTHO05D005272 2.8e-48 195.3 113 87.6
BraA05t21392Z Brassica rapa HOM05D004396 ORTHO05D005272 2.8e-48 195.3 113 87.6
Rhsim07G0132100 Rhododendron simsii HOM05D004396 ORTHO05D005272 2.8e-48 195.3 114 89.5
PGSC0003DMG400018505 Solanum tuberosum HOM05D004396 ORTHO05D005272 3.6e-48 194.9 114 86.0
Lalb_Chr05g0215751 Lupinus albus HOM05D004396 ORTHO05D005272 4.7e-48 194.5 115 87.0
ECA240G0094 Erigeron canadensis HOM05D004396 ORTHO05D005272 6.2e-48 194.1 122 86.1
FAN24G1987 Fragaria x ananassa HOM05D004396 ORTHO05D005272 6.2e-48 194.1 122 82.0
FAN27G1914 Fragaria x ananassa HOM05D004396 ORTHO05D005272 6.2e-48 194.1 122 82.0
Gohir.A12G206100 Gossypium hirsutum HOM05D004396 ORTHO05D005272 6.2e-48 194.1 114 88.6
Gohir.D12G208400 Gossypium hirsutum HOM05D004396 ORTHO05D005272 6.2e-48 194.1 114 88.6
Gorai.008G224000 Gossypium raimondii HOM05D004396 ORTHO05D005272 6.2e-48 194.1 114 88.6
FAN20G1930 Fragaria x ananassa HOM05D004396 ORTHO05D005272 8.0e-48 193.7 122 82.0
Lalb_Chr16g0381071 Lupinus albus HOM05D004396 ORTHO05D005272 8.0e-48 193.7 115 87.0
RcHm_v2.0_Chr6g0251281 Rosa chinensis HOM05D004396 ORTHO05D005272 1.1e-47 193.4 122 82.8
TWI60G0023 Tripterygium wilfordii HOM05D004396 ORTHO05D005272 1.4e-47 193.0 115 85.2
VMungo1215G3227 Vigna mungo HOM05D004396 ORTHO05D005272 1.4e-47 193.0 115 87.0
MD05G1007700 Malus domestica HOM05D004396 ORTHO05D005272 3.1e-47 191.8 114 87.7
Potri.001G136800 Populus trichocarpa HOM05D004396 ORTHO05D005272 4.0e-47 191.4 113 86.7
Lj2g0004535 Lotus japonicus HOM05D004396 ORTHO05D005272 5.2e-47 191.0 115 85.2
MD10G1005100 Malus domestica HOM05D004396 ORTHO05D005272 5.2e-47 191.0 116 86.2
ECA240G0984 Erigeron canadensis HOM05D000006 ORTHO05D000001 8.9e-47 190.3 122 84.4
Prupe.8G007900 Prunus persica HOM05D004396 ORTHO05D005272 1.2e-46 189.9 122 83.6
unitig_899.g15442 Utricularia gibba HOM05D004396 ORTHO05D005272 1.5e-46 189.5 115 86.1
Prupe.4G286900 Prunus persica HOM05D004396 ORTHO05D005272 2.0e-46 189.1 122 84.4
Migut.A01174 Erythranthe guttata HOM05D004396 ORTHO05D005272 2.6e-46 188.7 122 82.0
Medtr3g023120 Medicago truncatula HOM05D004396 ORTHO05D005272 2.6e-46 188.7 113 85.8
Glyma.09G207800 Glycine max HOM05D004396 ORTHO05D005272 5.8e-46 187.6 122 80.3
FvH4_2g00930 Fragaria vesca HOM05D004396 ORTHO05D005272 7.5e-46 187.2 110 86.4
TPR.G19425 Trifolium pratense HOM05D004396 ORTHO05D005272 7.5e-46 187.2 121 80.2
Ca_27048_v3 Cicer arietinum L. HOM05D004396 ORTHO05D005272 9.8e-46 186.8 116 82.8
SEGI_22391 Sequoiadendron giganteum HOM05D004396 ORTHO05D005272 2.2e-45 185.7 115 81.7
Cpa.g.sc42.149 Carica papaya HOM05D004396 ORTHO05D005272 3.7e-45 184.9 107 88.8
SalBow1G7612 Salvia bowleyana HOM05D004396 ORTHO05D005272 4.9e-45 184.5 114 83.3
Medtr5g029240 Medicago truncatula HOM05D004396 ORTHO05D005272 8.3e-45 183.7 110 84.5
HPP92_025493 Vanilla planifolia HOM05D004396 ORTHO05D005272 8.3e-45 183.7 115 83.5
Sabra01G0105900 Salix brachista HOM05D004396 ORTHO05D005272 2.4e-44 182.2 123 78.9
Lsat_1_v5_gn_6_80060 Lactuca sativa HOM05D004396 ORTHO05D005272 3.2e-44 181.8 105 87.6
HPP92_025445 Vanilla planifolia HOM05D004396 ORTHO05D005272 3.2e-44 181.8 115 82.6
EL10Ac5g11811 Beta vulgaris HOM05D004396 ORTHO05D005272 5.4e-44 181.0 151 68.9
Os04g0397000 Oryza sativa ssp. japonica HOM05D004396 ORTHO05D005272 5.4e-44 181.0 109 84.4
Psat5g213400 Pisum sativum HOM05D004396 ORTHO05D005272 5.4e-44 181.0 113 82.3
Glyma.14G201900 Glycine max HOM05D004396 ORTHO05D005272 1.2e-43 179.9 109 83.5
TPR.G31993 Trifolium pratense HOM05D004396 ORTHO05D005272 1.2e-43 179.9 113 82.3
Zm00001eb379050 Zea mays HOM05D004396 ORTHO05D005272 2.7e-43 178.7 109 83.5
Mapoly0046s0003 Marchantia polymorpha HOM05D004396 ORTHO05D005272 2.3e-42 175.6 112 78.6
SMO117G0136 Selaginella moellendorffii HOM05D004396 ORTHO05D005272 2.3e-42 175.6 109 80.7
Lj4g0004552 Lotus japonicus HOM05D004396 ORTHO05D005272 2.5e-41 172.2 115 77.4
Pp3c2_30990 Physcomitrium patens HOM05D004396 ORTHO05D005272 9.5e-41 170.2 114 71.9
Gohir.A03G000033 Gossypium hirsutum HOM05D004396 ORTHO05D005272 3.1e-39 165.2 174 58.6
AagrBONN_evm.TU.Sc2ySwM_362.1218 Anthoceros agrestis HOM05D000444 ORTHO05D000489 3.4e-38 161.8 108 75.9
BolC3t13671H Brassica oleracea HOM05D004396 ORTHO05D005272 1.7e-37 159.5 197 50.8
Peaxi162Scf00045g00321 Petunia axillaris HOM05D004396 ORTHO05D005272 3.7e-37 158.3 89 86.5
Gohir.D03G176200 Gossypium hirsutum HOM05D004396 ORTHO05D005272 6.4e-37 157.5 118 77.1
Migut.E00744 Erythranthe guttata HOM05D004396 ORTHO05D005272 4.1e-36 154.8 88 89.8
AUR62036328 Chenopodium quinoa HOM05D004396 ORTHO05D005272 2.3e-34 149.1 87 88.5
CiPaw.12G068300 Carya illinoinensis HOM05D004396 ORTHO05D005272 2.5e-33 145.6 90 82.2
Ciclev10013120m.g Citrus clementina HOM05D004396 ORTHO05D005272 9.6e-33 143.7 101 76.2
BolC5t31884H Brassica oleracea HOM05D004396 ORTHO05D005272 1.2e-32 143.3 85 85.9
arahy.Tifrunner.gnm1.ann1.KG0UNZ Arachis hypogaea HOM05D004396 ORTHO05D005272 4.7e-32 141.4 88 83.0
Sed0012676 Sechium edule HOM05D004396 ORTHO05D005272 1.8e-31 139.4 87 80.5
Cfa012506 Carpinus fangiana HOM05D004396 ORTHO05D005272 5.2e-31 137.9 81 85.2
MBI02_g15155_MAGBIO Magnolia biondii HOM05D004396 ORTHO05D005272 5.2e-31 137.9 72 94.4
Nn1g00212 Nelumbo nucifera HOM05D004396 ORTHO05D005272 1.2e-30 136.7 84 86.9
A08p09310 Brassica napus HOM05D004396 ORTHO05D005272 1.5e-30 136.3 105 69.5
BraA08t32929Z Brassica rapa HOM05D004396 ORTHO05D005272 1.5e-30 136.3 105 69.5
CAN.G1987.1 Capsicum annuum HOM05D004396 ORTHO05D005272 9.9e-30 133.7 73 90.4
Psat2g139040 Pisum sativum HOM05D004396 ORTHO05D005272 1.7e-29 132.9 67 97.0
Aa31LG2G13800 Aethionema arabicum HOM05D004396 ORTHO05D005272 6.6e-26 120.9 80 77.5
Ah.02g116090 Amaranthus hybridus HOM05D002241 ORTHO05D002458 1.9e-25 119.4 75 84.0
CBR_g15971 Chara braunii HOM05D004396 ORTHO05D005272 3.3e-25 118.6 109 56.9
Cre02.g108400 Chlamydomonas reinhardtii HOM05D004396 ORTHO05D005272 4.3e-25 118.2 97 55.7
Sc24g0004110 Simmondsia chinensis HOM05D004396 ORTHO05D005272 4.3e-25 118.2 72 86.1
Atru.chr6.1524 Acer truncatum HOM05D004396 ORTHO05D005272 6.2e-24 114.4 85 71.8
FAN15G2154 Fragaria x ananassa HOM05D004396 ORTHO05D005272 3.4e-22 108.6 79 72.2
BolC8t47998H Brassica oleracea HOM05D004396 ORTHO05D005272 9.3e-20 100.5 104 58.7
Pp3c1_6120 Physcomitrium patens HOM05D004396 ORTHO05D005272 2.7e-19 99.0 72 68.1
Hund15006 Selenicereus undatus HOM05D004396 ORTHO05D005272 2.4e-15 85.9 61 73.8
C03p12000 Brassica napus HOM05D004396 ORTHO05D023989 1.1e-09 67.0 48 72.9
A09p33990 Brassica napus HOM05D004396 ORTHO05D005272 7.4e-09 64.3 42 81.0
C05p39130 Brassica napus HOM05D004396 ORTHO05D005272 4.8e-08 61.6 41 75.6
BolC5t32648H Brassica oleracea HOM05D004396 ORTHO05D005272 4.8e-08 61.6 41 75.6
RcHm_v2.0_Chr6g0251331 Rosa chinensis HOM05D004396 ORTHO05D005272 1.8e-07 59.7 67 53.7
RcHm_v2.0_Chr6g0251311 Rosa chinensis HOM05D004396 ORTHO05D005272 3.1e-07 58.9 50 66.0
TPR.G36203 Trifolium pratense HOM05D004396 ORTHO05D005272 4.5e-06 55.1 47 63.8


User provided reference genes

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