Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO210G5284 Papaver somniferum HOM05D004847 ORTHO05D005856 5.5e-193 677.6 363 100.0
PSO832G1768 Papaver somniferum HOM05D004847 ORTHO05D005856 5.5e-185 651.0 363 96.7
TAR362G0189 Trochodendron aralioides HOM05D004847 ORTHO05D005856 3.7e-125 452.2 357 73.1
TAR633G0229 Trochodendron aralioides HOM05D004847 ORTHO05D005856 2.3e-122 443.0 365 70.4
QL03p006978 Quercus lobata HOM05D004847 ORTHO05D005856 1.9e-116 423.3 358 71.8
GSVIVG01000048001 Vitis vinifera HOM05D004847 ORTHO05D005856 1.2e-115 420.6 359 69.9
Nn4g26247 Nelumbo nucifera HOM05D004847 ORTHO05D005856 6.6e-114 414.8 357 68.3
COL.COLO4_13475 Corchorus olitorius HOM05D004847 ORTHO05D005856 7.3e-113 411.4 365 68.2
Thecc.05G303800 Theobroma cacao HOM05D004847 ORTHO05D005856 4.7e-112 408.7 364 68.4
Gorai.004G241800 Gossypium raimondii HOM05D004847 ORTHO05D005856 8.9e-111 404.4 361 68.1
Potri.013G022600 Populus trichocarpa HOM05D004847 ORTHO05D005856 8.9e-111 404.4 372 66.7
Aqoxy5G00505 Aquilegia oxysepala HOM05D004847 ORTHO05D005856 2.6e-110 402.9 391 62.4
Gohir.D11G275000 Gossypium hirsutum HOM05D004847 ORTHO05D005856 3.4e-110 402.5 386 64.2
Gorai.007G296800 Gossypium raimondii HOM05D004847 ORTHO05D005856 3.4e-110 402.5 386 64.2
TWI56G1294 Tripterygium wilfordii HOM05D004847 ORTHO05D005856 7.6e-110 401.4 359 66.9
Gohir.A11G264800 Gossypium hirsutum HOM05D004847 ORTHO05D005856 1.1e-108 397.5 386 63.5
Potri.005G033200 Populus trichocarpa HOM05D004847 ORTHO05D005856 4.6e-107 392.1 360 66.7
Prupe.6G326100 Prunus persica HOM05D004847 ORTHO05D005856 4.6e-107 392.1 361 66.8
Gohir.A08G210800 Gossypium hirsutum HOM05D004847 ORTHO05D005856 1.7e-106 390.2 361 66.8
Sabra05G0035400 Salix brachista HOM05D004847 ORTHO05D005856 6.6e-106 388.3 361 65.9
Duzib128G0091 Durio zibethinus HOM05D004847 ORTHO05D005856 4.3e-105 385.6 351 66.4
Duzib106G0633 Durio zibethinus HOM05D004847 ORTHO05D005856 1.6e-104 383.6 388 62.1
Manes.09G166900 Manihot esculenta HOM05D004847 ORTHO05D005856 2.8e-104 382.9 373 63.8
DCAR_003332 Daucus carota HOM05D004847 ORTHO05D005856 5.8e-102 375.2 355 64.2
Sabra13G0024700 Salix brachista HOM05D004847 ORTHO05D005856 9.9e-102 374.4 332 67.2
CiPaw.08G164900 Carya illinoinensis HOM05D004847 ORTHO05D005856 3.8e-101 372.5 382 63.4
Eucgr.L01544 Eucalyptus grandis HOM05D004847 ORTHO05D005856 3.2e-100 369.4 369 61.8
MD12G1219500 Malus domestica HOM05D004847 ORTHO05D005856 7.1e-100 368.2 367 63.2
Haze_04198 Corylus avellana HOM05D004847 ORTHO05D005856 4.6e-99 365.5 360 64.7
CiPaw.07G017600 Carya illinoinensis HOM05D004847 ORTHO05D005856 1.3e-98 364.0 326 68.4
Ciclev10003680m.g Citrus clementina HOM05D004847 ORTHO05D001311 1.1e-97 360.9 391 60.4
FAN05G5722 Fragaria x ananassa HOM05D004847 ORTHO05D005856 1.1e-97 360.9 370 62.7
CANSAT54G0893 Cannabis sativa HOM05D004847 ORTHO05D005856 2.5e-97 359.8 380 62.1
FAN05G5436 Fragaria x ananassa HOM05D004847 ORTHO05D005856 3.3e-97 359.4 370 62.4
Atru.chr2.410 Acer truncatum HOM05D004847 ORTHO05D005856 4.3e-97 359.0 387 60.7
CSS0010861 Camellia sinensis var. sinensis HOM05D004847 ORTHO05D005856 4.3e-97 359.0 347 62.8
Ca_10113_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 5.6e-97 358.6 367 62.4
Cc11_g03560 Coffea canephora HOM05D004847 ORTHO05D005856 9.6e-97 357.8 347 62.2
RcHm_v2.0_Chr3g0454731 Rosa chinensis HOM05D004847 ORTHO05D005856 9.6e-97 357.8 369 61.8
FvH4_6g05820 Fragaria vesca HOM05D004847 ORTHO05D005856 1.7e-93 347.1 370 61.6
FAN14G3900 Fragaria x ananassa HOM05D004847 ORTHO05D005856 1.7e-93 347.1 370 61.6
vmacro19624 Vaccinium macrocarpon HOM05D004847 ORTHO05D005856 4.9e-93 345.5 368 60.9
Peaxi162Scf00037g00632 Petunia axillaris HOM05D004847 ORTHO05D005856 1.9e-92 343.6 409 55.3
SalBow3G4161 Salvia bowleyana HOM05D004847 ORTHO05D005856 2.4e-92 343.2 369 58.0
Gohir.D08G227600 Gossypium hirsutum HOM05D004847 ORTHO05D005856 4.2e-92 342.4 294 69.4
Dinv23942 Davidia involucrata HOM05D004847 ORTHO05D005856 5.4e-92 342.0 372 59.4
Hma1.2p1_0928F.1_g237810 Hydrangea macrophylla HOM05D004847 ORTHO05D005856 5.4e-92 342.0 364 59.6
Phvul.007G179800 Phaseolus vulgaris HOM05D004847 ORTHO05D005856 7.1e-92 341.7 400 58.2
Actinidia24643 Actinidia chinensis HOM05D004847 ORTHO05D005856 2.1e-91 340.1 365 57.8
arahy.Tifrunner.gnm1.ann1.91A0PW Arachis hypogaea HOM05D004847 ORTHO05D005856 2.3e-90 336.7 407 57.7
MBI19_g05601_MAGBIO Magnolia biondii HOM05D004847 ORTHO05D005856 3.9e-90 335.9 366 57.7
MD04G1205400 Malus domestica HOM05D004847 ORTHO05D005856 5.1e-90 335.5 370 59.5
arahy.Tifrunner.gnm1.ann1.WTPV8B Arachis hypogaea HOM05D004847 ORTHO05D005856 1.5e-89 334.0 406 57.4
Lalb_Chr04g0260731 Lupinus albus HOM05D004847 ORTHO05D005856 2.5e-89 333.2 342 64.0
TWI12G0805 Tripterygium wilfordii HOM05D004847 ORTHO05D005856 2.5e-89 333.2 362 57.7
Psat0s3135g0240 Pisum sativum HOM05D004847 ORTHO05D005856 4.3e-89 332.4 394 55.8
Nitab4.5_0000137g0030 Nicotiana tabacum HOM05D004847 ORTHO05D005856 5.6e-89 332.0 410 55.4
Nitab4.5_0003156g0010 Nicotiana tabacum HOM05D004847 ORTHO05D005856 2.1e-88 330.1 412 54.1
CAN.G1034.25 Capsicum annuum HOM05D004847 ORTHO05D005856 4.8e-88 328.9 464 48.9
Glyma.10G154100 Glycine max HOM05D004847 ORTHO05D005856 1.4e-87 327.4 397 56.2
Glyma.20G234200 Glycine max HOM05D004847 ORTHO05D005856 2.6e-86 323.2 392 55.9
PGR083G0144 Punica granatum HOM05D004847 ORTHO05D005856 4.5e-86 322.4 382 57.9
THA.LOC104818696 Tarenaya hassleriana HOM05D004847 ORTHO05D005856 7.6e-86 321.6 423 52.0
Sc16g0008460 Simmondsia chinensis HOM05D004847 ORTHO05D005856 1.7e-85 320.5 380 56.3
Lsat_1_v5_gn_9_123520 Lactuca sativa HOM05D004847 ORTHO05D005856 6.4e-85 318.5 369 54.7
MSTRG.27999 Avicennia marina HOM05D004847 ORTHO05D005856 5.5e-84 315.5 322 59.6
Hund07068 Selenicereus undatus HOM05D004847 ORTHO05D005856 7.1e-84 315.1 382 54.2
CsaV3_2G005250 Cucumis sativus L. HOM05D004847 ORTHO05D005856 1.6e-83 313.9 424 52.6
Migut.B01038 Erythranthe guttata HOM05D004847 ORTHO05D005856 1.0e-82 311.2 355 57.5
Solyc01g099270.2 Solanum lycopersicum HOM05D004847 ORTHO05D005856 1.3e-82 310.8 304 61.5
VMungo0720G3140 Vigna mungo HOM05D004847 ORTHO05D005856 1.3e-82 310.8 371 55.8
Sopen01g042820 Solanum pennellii HOM05D004847 ORTHO05D005856 1.8e-82 310.5 304 61.2
Oeu017487.1 Olea europaea HOM05D004847 ORTHO05D005856 2.5e-81 306.6 331 59.2
DCAR_029413 Daucus carota HOM05D004847 ORTHO05D005856 1.6e-80 303.9 364 54.4
PGSC0003DMG401024742 Solanum tuberosum HOM05D004847 ORTHO05D005856 2.8e-80 303.1 459 46.8
Lalb_Chr02g0148231 Lupinus albus HOM05D004847 ORTHO05D005856 1.1e-79 301.2 386 54.7
MELO3C004268.2 Cucumis melo HOM05D004847 ORTHO05D005856 1.4e-79 300.8 426 50.7
ECA240G3864 Erigeron canadensis HOM05D004847 ORTHO05D005856 1.8e-79 300.4 339 57.2
Migut.N02003 Erythranthe guttata HOM05D004847 ORTHO05D005856 3.1e-79 299.7 380 53.9
CSS0017838 Camellia sinensis var. sinensis HOM05D004847 ORTHO05D005856 6.9e-79 298.5 362 55.2
HanXRQChr09g0248411 Helianthus annuus HOM05D004847 ORTHO05D005856 1.2e-78 297.7 384 51.8
Lj5A533T17 Lonicera japonica HOM05D004847 ORTHO05D005856 1.3e-77 294.3 371 54.7
BraSC132t45510Z Brassica rapa HOM05D004847 ORTHO05D005856 2.9e-77 293.1 456 46.3
AUR62000830 Chenopodium quinoa HOM05D004847 ORTHO05D005856 2.9e-77 293.1 382 51.3
Ah.06g189340 Amaranthus hybridus HOM05D004847 ORTHO05D005856 4.9e-77 292.4 382 53.4
BNapus_Darmor_BZH_scaffold_114p00170 Brassica napus HOM05D004847 ORTHO05D005856 4.9e-77 292.4 458 46.3
EL10Ac4g09352 Beta vulgaris HOM05D004847 ORTHO05D005856 8.4e-77 291.6 343 55.1
AUR62005144 Chenopodium quinoa HOM05D004847 ORTHO05D005856 2.5e-76 290.0 375 50.9
Migut.O00711 Erythranthe guttata HOM05D004847 ORTHO05D005856 1.2e-75 287.7 381 53.0
Medtr7g113510 Medicago truncatula HOM05D004847 ORTHO05D005856 2.3e-74 283.5 429 47.3
Thhalv10020613m.g Eutrema salsugineum HOM05D004847 ORTHO05D005856 5.1e-74 282.3 489 44.0
BraA05t23024Z Brassica rapa HOM05D004847 ORTHO05D005856 1.1e-73 281.2 459 44.9
A05p42290 Brassica napus HOM05D004847 ORTHO05D005856 1.5e-73 280.8 460 44.6
Rhsim05G0141800 Rhododendron simsii HOM05D004847 ORTHO05D005856 1.5e-73 280.8 369 52.8
AT3G05330 Arabidopsis thaliana HOM05D004847 ORTHO05D005856 1.9e-73 280.4 388 50.3
BolC1t05700H Brassica oleracea HOM05D004847 ORTHO05D005856 1.9e-73 280.4 451 43.5
CARHR079680 Cardamine hirsuta HOM05D004847 ORTHO05D005856 2.5e-73 280.0 393 50.6
Sed0004129 Sechium edule HOM05D004847 ORTHO05D005856 5.7e-73 278.9 450 46.9
C05p61870 Brassica napus HOM05D004847 ORTHO05D005856 1.3e-72 277.7 454 45.4
BolC5t34847H Brassica oleracea HOM05D004847 ORTHO05D005856 1.3e-72 277.7 454 45.4
CDE10G0375 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 1.6e-72 277.3 330 54.8
Lj5g0019148 Lotus japonicus HOM05D004847 ORTHO05D005856 1.6e-72 277.3 454 47.1
ClCG02G015810 Citrullus lanatus HOM05D000141 ORTHO05D001311 1.4e-71 274.2 343 56.3
AL3G15780 Arabidopsis lyrata HOM05D004847 ORTHO05D005856 4.5e-70 269.2 377 50.9
Carub.0003s0461 Capsella rubella HOM05D004847 ORTHO05D005856 2.9e-69 266.5 483 42.9
Glyma.19G235300 Glycine max HOM05D004847 ORTHO05D005856 1.6e-67 260.8 346 50.9
BcaC05g30136 Brassica carinata HOM05D004847 ORTHO05D005856 1.0e-66 258.1 336 50.9
Medtr1g082940 Medicago truncatula HOM05D004847 ORTHO05D005856 3.3e-65 253.1 320 55.3
Sp3g04200 Schrenkiella parvula HOM05D004847 ORTHO05D005856 3.3e-65 253.1 479 42.0
TPR.G33190 Trifolium pratense HOM05D004847 ORTHO05D005856 2.2e-64 250.4 467 41.8
TPR.G11389 Trifolium pratense HOM05D004847 ORTHO05D005856 8.2e-64 248.4 298 59.1
Aa31LG5G15720 Aethionema arabicum HOM05D000141 ORTHO05D001311 1.4e-63 247.7 421 45.4
Actinidia28666 Actinidia chinensis HOM05D004847 ORTHO05D005856 6.9e-63 245.4 336 50.3
Phvul.006G091600 Phaseolus vulgaris HOM05D004847 ORTHO05D005856 9.1e-63 245.0 404 46.3
HPP92_003277 Vanilla planifolia HOM05D004847 ORTHO05D005856 5.0e-61 239.2 367 47.4
Zm00001eb286860 Zea mays HOM05D004847 ORTHO05D005856 8.5e-61 238.4 405 45.2
CDE10G0883 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 1.9e-60 237.3 431 41.3
Cpa.g.sc48.48 Carica papaya HOM05D004847 ORTHO05D005856 3.6e-59 233.0 250 58.0
BcaC05g30154 Brassica carinata HOM05D004847 ORTHO05D005856 1.9e-52 210.7 263 54.0
ATR0626G214 Amborella trichopoda HOM05D004847 ORTHO05D005856 1.8e-50 204.1 392 40.6
Ca_09350_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 6.7e-50 202.2 310 49.4
Glyma.03G237700 Glycine max HOM05D004847 ORTHO05D005856 1.3e-48 198.0 316 47.2
VMungo0540G0069 Vigna mungo HOM05D004847 ORTHO05D005856 3.2e-44 183.3 345 44.1
SGA_v2.0_scaffold81G26072 Striga asiatica HOM05D004847 ORTHO05D005856 1.8e-42 177.6 383 41.5
Manes.08G120800 Manihot esculenta HOM05D004847 ORTHO05D005856 5.2e-42 176.0 355 42.3
SGA_v2.0_scaffold80G25911 Striga asiatica HOM05D004847 ORTHO05D005856 9.7e-41 171.8 369 40.4
TPR.G6113 Trifolium pratense HOM05D006420 ORTHO05D008009 7.2e-36 155.6 135 66.7
Psat0s212g0040 Pisum sativum HOM05D004847 ORTHO05D005856 2.7e-35 153.7 325 39.7
Os02g0459300 Oryza sativa ssp. japonica HOM05D004847 ORTHO05D005856 8.0e-35 152.1 338 40.8
CDE10G0745 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 2.3e-26 124.0 161 52.2
Cpa.g.sc48.49 Carica papaya HOM05D004847 ORTHO05D005856 4.1e-23 113.2 76 76.3
Zm00001eb269750 Zea mays HOM05D004847 ORTHO05D005856 1.2e-22 111.7 250 37.2
SEGI_00809 Sequoiadendron giganteum HOM05D004847 ORTHO05D005856 5.9e-22 109.4 135 45.9
Gorai.004G124500 Gossypium raimondii HOM05D004847 ORTHO05D005856 3.3e-20 103.6 78 66.7
GSVIVG01000050001 Vitis vinifera HOM05D000141 ORTHO05D001311 4.3e-20 103.2 98 60.2
Gohir.D12G153350 Gossypium hirsutum HOM05D004847 ORTHO05D005856 4.7e-19 99.8 66 78.8
Actinidia19789 Actinidia chinensis HOM05D004847 ORTHO05D005856 2.2e-16 90.9 86 62.8
MD02G1275700 Malus domestica HOM05D004847 ORTHO05D005856 3.7e-16 90.1 63 73.0
MD00G1120700 Malus domestica HOM05D004847 ORTHO05D005856 6.4e-16 89.4 63 73.0
Gohir.D08G115550 Gossypium hirsutum HOM05D004847 ORTHO05D005856 8.3e-16 89.0 60 76.7
SEGI_03169 Sequoiadendron giganteum HOM05D004847 ORTHO05D005856 1.9e-15 87.8 167 41.9
Ca_09354_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 9.2e-15 85.5 59 71.2
Lsat_1_v5_gn_8_18301 Lactuca sativa HOM05D004847 ORTHO05D005856 1.3e-13 81.6 92 51.1
Zm00001eb092520 Zea mays HOM05D004847 ORTHO05D005856 2.5e-12 77.4 175 40.6
Psat3g073720 Pisum sativum HOM05D004847 ORTHO05D005856 3.3e-12 77.0 123 47.2
SHI18142 Sapria himalayana HOM05D000141 ORTHO05D001311 7.3e-12 75.9 333 32.1


User provided reference genes

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